mRNA_Ecto-sp13_S_contig12059.1757.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12059.1757.1
Unique NamemRNA_Ecto-sp13_S_contig12059.1757.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: D7FM71_ECTSI (60S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.770e-30
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 171
            R RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKL QSLPPGLHKKQLQ
Sbjct:   16 RRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 72
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.700e-18
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 168
            R +DAKSVKIK  K    TKFKIRCSRYLYTLCV DK+KADKL QSLPPGL +K +
Sbjct:   16 RRKDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: UPI00083C7834 (60S ribosomal protein L38 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C7834)

HSP 1 Score: 79.7 bits (195), Expect = 1.180e-17
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQ 165
            R +DAKSVKIKNN   ++TKFK+RCSR+LYTL + DKEKA+KL QSLPPGL  K+
Sbjct:   16 RRKDAKSVKIKNNPKKNNTKFKVRCSRFLYTLVINDKEKAEKLKQSLPPGLQVKE 70
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: RL38_BRABE (60S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=6072 RepID=RL38_BRABE)

HSP 1 Score: 79.0 bits (193), Expect = 2.260e-17
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 171
            R +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKADKL QSLPPGL  K+L+
Sbjct:   16 RRKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKELK 70
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: H3BEF3_LATCH (60S ribosomal protein L38 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BEF3_LATCH)

HSP 1 Score: 79.0 bits (193), Expect = 3.090e-17
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 171
            R +DAKSVKIK NK   + KFK+RCS+YLYTL +TDKEKA+KL QSLPPGL KK+++
Sbjct:   23 RRKDAKSVKIKKNK--ENVKFKVRCSKYLYTLVITDKEKAEKLKQSLPPGLRKKKIK 77
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A8C6FVY5_MOSMO (60S ribosomal protein L38 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8C6FVY5_MOSMO)

HSP 1 Score: 78.2 bits (191), Expect = 4.540e-17
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 171
            R +DAKSVKIK NK   + KFKIRCSRYLYTL +TDKEKA+KL QSLPPGL  K+L+
Sbjct:   16 RRKDAKSVKIKKNK--DNVKFKIRCSRYLYTLVITDKEKAEKLKQSLPPGLAMKELK 70
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: UPI001601EE84 (60S ribosomal protein L38-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601EE84)

HSP 1 Score: 79.0 bits (193), Expect = 4.620e-17
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 171
            R +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKADKL QSLPPGL  K+L+
Sbjct:   43 RRKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKELK 97
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A8C3T3Y6_CHESE (60S ribosomal protein L38 n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3T3Y6_CHESE)

HSP 1 Score: 77.8 bits (190), Expect = 5.250e-17
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    4 SRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 171
            S+DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKA+KL QSLPPGL  K+L+
Sbjct:    9 SKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 62
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BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A8C7DG53_ONCKI (60S ribosomal protein L38 n=5 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7DG53_ONCKI)

HSP 1 Score: 77.8 bits (190), Expect = 6.440e-17
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 171
            R +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKA+KL QSLPPGL  K+L+
Sbjct:   16 RRKDAKSVKIKKNK--ENVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A4W6DZC8_LATCA (60S ribosomal protein L38 n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6DZC8_LATCA)

HSP 1 Score: 77.4 bits (189), Expect = 7.830e-17
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 171
            R +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKA+KL QSLPPGL  K+L+
Sbjct:   10 RRKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM71_ECTSI2.770e-3096.4960S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CJ21_9STRA7.700e-1873.21Ribosomal protein L38 n=1 Tax=Tribonema minus TaxI... [more]
UPI00083C78341.180e-1769.0960S ribosomal protein L38 n=1 Tax=Nicrophorus vesp... [more]
RL38_BRABE2.260e-1771.9360S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=... [more]
H3BEF3_LATCH3.090e-1768.4260S ribosomal protein L38 n=1 Tax=Latimeria chalum... [more]
A0A8C6FVY5_MOSMO4.540e-1771.9360S ribosomal protein L38 n=2 Tax=Boreoeutheria Ta... [more]
UPI001601EE844.620e-1771.9360S ribosomal protein L38-like n=1 Tax=Branchiosto... [more]
A0A8C3T3Y6_CHESE5.250e-1771.4360S ribosomal protein L38 n=1 Tax=Chelydra serpent... [more]
A0A8C7DG53_ONCKI6.440e-1770.1860S ribosomal protein L38 n=5 Tax=Oncorhynchus Tax... [more]
A0A4W6DZC8_LATCA7.830e-1770.1860S ribosomal protein L38 n=4 Tax=Percomorphaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12059contigEcto-sp13_S_contig12059:27..1438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score111.3
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7FM71
Preferred nameRPL38
Model size310
KEGG koko:K02923
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000028,GO:0000184,GO:0000956,GO:0001501,GO:0001503,GO:0002181,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0007423,GO:0007498,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0031326,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033291,GO:0033365,GO:0034248,GO:0034463,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0042471,GO:0042474,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048318,GO:0048513,GO:0048519,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050954,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070972,GO:0070992,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0090596,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:2000112
Exons2
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG3499@1,KOG3499@2759
Ec32 ortholog descriptionRibosomal protein L38e
Ec32 orthologEc-16_004840.1
Cds size174
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.8568995-CDS-Ecto-sp13_S_contig12059:26..1071681462640.8568995-CDS-Ecto-sp13_S_contig12059:26..107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12059 27..107 +
1681462640.8702605-CDS-Ecto-sp13_S_contig12059:1209..13021681462640.8702605-CDS-Ecto-sp13_S_contig12059:1209..1302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12059 1210..1302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.8815856-UTR-Ecto-sp13_S_contig12059:1302..14381681462640.8815856-UTR-Ecto-sp13_S_contig12059:1302..1438Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12059 1303..1438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12059.1757.1prot_Ecto-sp13_S_contig12059.1757.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12059 27..1302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12059.1757.1

>prot_Ecto-sp13_S_contig12059.1757.1 ID=prot_Ecto-sp13_S_contig12059.1757.1|Name=mRNA_Ecto-sp13_S_contig12059.1757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPG
LHKKQLQ*
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mRNA from alignment at Ecto-sp13_S_contig12059:27..1438+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12059.1757.1 ID=mRNA_Ecto-sp13_S_contig12059.1757.1|Name=mRNA_Ecto-sp13_S_contig12059.1757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1412bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12059:27..1438+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTAGCCGCGATGCCAAGTCTGTGAAGATCAAGAACAACAAGGCGACTCA
CTCGACCAAGTTCAAGATCCGCTGCTCCAGGGTGAGTCATGTCGATCACA
AAAAAGACTCGACTTTTGGATGCTTAAATGACTCCCACATGCTGTCCTTC
CCGCAGTACTTGCAGCACACTGATGCCTGGATGTTGTAGGTAATTGCCTC
AGCAGCTTGATTTAACAGGGTTCAGATGTGTCCTTATATTTTTAAGGAAC
TAGGGGTCAAGACAAGAAACGCCTGCTGGTACACTCATTTGACGTAATTT
TTTCCCCAACTGTTTGTGGTTCTGTTGCGGATCTTTAATGCATCGTGCTG
CAGTTTTAGAAGGCCGTCTCCAGTGTTTGTCATGCTAAGGTACACACGTA
GTTTTCTTTCGTGAAGCACGCATGCCATGTGCTTGGGGCGGCAACGCTGC
TGGCACTTACAACAAAACTCCGTTGTTTCATCGCTTGTTTTTTTGTGTTG
TGCTGACATCGGCCAGATGATGTTTGAATTTTTATCTCATCTCTCAAGTG
TGGCGTTGAGAAGAAACCGGCAGGAAAAACCATGTTGTTTGCATGGACGA
ATGTTTCCCAAGGGTACGCACCCCCTATCGCATATCGGAAGCCTCCCACC
AAAGTGGATTTGAAGGTCAGATTCTCGATGGAGGGCGACATCTGTGGTTT
TGTTTTGGCGTTGTTAGACAAGGGTGCACTCCGATATTTGGGTTGCAGGC
TAAGATATTGGCGAGTTACGCAACTTGCATGCGCATCAGGTGGCACCATC
TTGGGAGCTATGCTTATCAGCTATTTAAATCGTCGCCTTCCAAACCGTTG
TTTCGTTTTCCCCCAGCTGGGCTCGGCTTTTACATGTGTGTAGTAGTCCA
CCTGTATGCGTTTGATGTCACATAGCTTCTCATCATACACCTCCTCACGT
GCCATTCCTGATTTTTTTTCCTTTCGTGCTGTGCTTGACTGGCGGCACTT
GCAAGTCCGCCTGTAGTCTCTCACCTTCCCGTAATACACCTCCTCATCCC
TCGCCATTCCTCAACTTTTTTCGTTCGTGCTGTGCTTGGTGAGTTTTTCA
GCTCCTTCCCTCACCCCGTTGTTTCTGTTCCCCCCTTCTTCTCTGCTCTC
CCTTGTGAACGCTGTATGTGTCGCTTCGCGCAGTACCTGTACACTCTGTG
CGTCACCGACAAGGAGAAGGCCGACAAGCTCGCGCAATCGCTTCCCCCCG
GTCTGCACAAGAAGCAGCTTCAATGATTCATCTCATCCGTCTCGCTTAGA
CTGGATTCGTCCCAAGGCTTCCTAGCTTCCTGATGACGGGGTTGACTTTG
CTGCCGGGACCGGACCTCTCGAACCGATGGGTTTCGTCTTCGCTGCTGTG
ATGGCTCGGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12059:27..1438+

>mRNA_Ecto-sp13_S_contig12059.1757.1 ID=mRNA_Ecto-sp13_S_contig12059.1757.1|Name=mRNA_Ecto-sp13_S_contig12059.1757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12059:27..1438+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTAGCCGCGATGCCAAGTCTGTGAAGATCAAGAACAACAAGGCGACTCA
CTCGACCAAGTTCAAGATCCGCTGCTCCAGGTACCTGTACACTCTGTGCG
TCACCGACAAGGAGAAGGCCGACAAGCTCGCGCAATCGCTTCCCCCCGGT
CTGCACAAGAAGCAGCTTCAATGA
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