mRNA_Ecto-sp13_S_contig6691.17571.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6691.17571.1
Unique NamemRNA_Ecto-sp13_S_contig6691.17571.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6691.17571.1 vs. uniprot
Match: A0A6H5LNS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNS9_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 5.290e-65
Identity = 177/224 (79.02%), Postives = 181/224 (80.80%), Query Frame = -1 
Query:    1 PNRLEQENISTPPGGGRRGIPRPPPGFWGPRGPPPPGHPAWNDPALEQYIPRQQHGTGEGDGGRPGVXXXXXXXXXPGFYPPRGEGVRGA-GEPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXWAAVGGLPPRGFGGPQQHQGRGGAGLGGPMRGRXXXXXXXXXXXX--------MVRPDXXXXXXXXXXXXXXX-----WRPMGTAPWENGRGDVXXXXPAG 630
            P+RLEQENI+ PPGGGRRG+PRPPPGFWGPRGPPP GHPAWNDPALEQYIPRQQHG GEGDGG PGV       XXPGFYPPRGEGVRG  GEPRR XXXXXXXXXXXXXXXXXXXXXXXXXX AA GGLP RGFGGPQQHQGRGGAG GGP+RGR XXXXXXXXXXX        MVRPD       XXXXXXXX     WRPMGTAPWENGRGDV   X AG
Sbjct: 1027 PDRLEQENIAAPPGGGRRGVPRPPPGFWGPRGPPPSGHPAWNDPALEQYIPRQQHGNGEGDGGCPGVGRGGRGGXXPGFYPPRGEGVRGGVGEPRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGLPLRGFGGPQQHQGRGGAGSGGPIRGRGXXXXXXXXXXXXQNGSRGSMVRPDEGRGPLPXXXXXXXXXGDGLWRPMGTAPWENGRGDVLPPXXAG 1250
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BLAST of mRNA_Ecto-sp13_S_contig6691.17571.1 vs. uniprot
Match: D8LPQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ7_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 4.950e-51
Identity = 154/203 (75.86%), Postives = 155/203 (76.35%), Query Frame = -1 
Query:   37 PNRLEQENISTPPGGGRRGIPRPPPGFWGPRGPPPPGHPAWNDPALEQYIPRQQHGTGEGDGGRPGVXXXXXXXXXPGFYPPRGEGVRGA-GEPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXWAAVGGLPPRGFGGPQQHQGRGGAGLGGPMRGRXXXXXXXXXXXX----MVRPDXXXXXXXXXXXXXXXWRPMGTAPWEN 630
            PNRLEQENI+ PPGGGRRGIPRPPPGFWGPRGPPPPGHPAWNDPALEQYIPRQQHG           XXXXXXXXXPGFYPPRGEGVRG  GEPRRXXXXXXXXXXXXXXXXXXXXXXXXXXX     GLPPRGFGGPQQHQGRGGAG        XXXXXXXXXX      MVRPD               WRPMGTAPWEN
Sbjct: 1111 PNRLEQENIAAPPGGGRRGIPRPPPGFWGPRGPPPPGHPAWNDPALEQYIPRQQHGNXXXXXXXXXXXXXXXXXXXPGFYPPRGEGVRGGVGEPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLPPRGFGGPQQHQGRGGAGXXXXXXXXXXXXXXXXXXNGSRGSMVRPDEGRGPLPPPPPGDGPWRPMGTAPWEN 1313
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6691.17571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LNS9_9PHAE5.290e-6579.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPQ7_ECTSI4.950e-5175.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6691contigEcto-sp13_S_contig6691:5935..6565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size631
Hectar predicted targeting categorymitochondrion
Exons1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.8130076-CDS-Ecto-sp13_S_contig6691:5934..65641681463919.8130076-CDS-Ecto-sp13_S_contig6691:5934..6564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6691 5935..6564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6691.17571.1prot_Ecto-sp13_S_contig6691.17571.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6691 5935..6564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6691.17571.1

>prot_Ecto-sp13_S_contig6691.17571.1 ID=prot_Ecto-sp13_S_contig6691.17571.1|Name=mRNA_Ecto-sp13_S_contig6691.17571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
ACWRRRKHVTPTVLPRCRTHRPPRAVTRRRRRQWPPALVRSNHRPSRPVL
ATAAAAASHRTTQSGTTPALMLLRPPESSRWKTAHCGPRRGRLTTTTGTP
RTIEVKRRAPILLLLPPWLPGSSHSFAPGRIEARASSSSPPPPYSRAAAV
SFPGPVLLPRYVLLESRVVPGGVSGGRGTPRSPKSGRGTGYPPSAAAGGG
GNVFLLQSVG
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mRNA from alignment at Ecto-sp13_S_contig6691:5935..6565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6691.17571.1 ID=mRNA_Ecto-sp13_S_contig6691.17571.1|Name=mRNA_Ecto-sp13_S_contig6691.17571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6691:5935..6565+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGCTGGCGGCGGCGGAAGCACGTCACCCCGACCGTTCTCCCACGGTG
CCGTACCCATCGGCCGCCACGGGCCGTCACCAGGCGGCGGCGGCGGCAGT
GGCCCCCTGCCCTCGTCCGGTCTAACCATCGGCCCTCGAGACCCGTTCTG
GCCACCGCGGCCGCCGCGGCCTCTCATCGGACCACCCAATCCGGCACCAC
CCCGGCCCTGATGCTGCTGAGGCCCCCCGAATCCTCTCGGTGGAAGACCG
CCCACTGCGGCCCACGGCGGGGGAGGCTGACCACCACCACCGGGACCCCC
CGCACCATCGAAGTGAAGCGGCGGGCCCCCATCCTGCTGTTGCTGCCTCC
TTGGCTCCCCGGCTCCTCTCACTCCTTCGCCCCGGGGCGGATAGAAGCCA
GGGCCTCGTCCTCCTCTCCCCCCCCCCCCTACTCCCGGGCGGCCGCCGTC
TCCTTCCCCGGTCCCGTGTTGTTGCCTCGGTATGTACTGCTCGAGAGCCG
GGTCGTTCCAGGCGGGGTGTCCGGGGGGAGGGGGACCCCGCGGTCCCCAA
AATCCGGGAGGGGGACGGGGTATCCCCCGTCTGCCGCCGCCGGGGGGGGT
GGAAATGTTTTCTTGCTCCAGTCTGTTGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6691:5935..6565+

>mRNA_Ecto-sp13_S_contig6691.17571.1 ID=mRNA_Ecto-sp13_S_contig6691.17571.1|Name=mRNA_Ecto-sp13_S_contig6691.17571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6691:5935..6565+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGCTGGCGGCGGCGGAAGCACGTCACCCCGACCGTTCTCCCACGGTG
CCGTACCCATCGGCCGCCACGGGCCGTCACCAGGCGGCGGCGGCGGCAGT
GGCCCCCTGCCCTCGTCCGGTCTAACCATCGGCCCTCGAGACCCGTTCTG
GCCACCGCGGCCGCCGCGGCCTCTCATCGGACCACCCAATCCGGCACCAC
CCCGGCCCTGATGCTGCTGAGGCCCCCCGAATCCTCTCGGTGGAAGACCG
CCCACTGCGGCCCACGGCGGGGGAGGCTGACCACCACCACCGGGACCCCC
CGCACCATCGAAGTGAAGCGGCGGGCCCCCATCCTGCTGTTGCTGCCTCC
TTGGCTCCCCGGCTCCTCTCACTCCTTCGCCCCGGGGCGGATAGAAGCCA
GGGCCTCGTCCTCCTCTCCCCCCCCCCCCTACTCCCGGGCGGCCGCCGTC
TCCTTCCCCGGTCCCGTGTTGTTGCCTCGGTATGTACTGCTCGAGAGCCG
GGTCGTTCCAGGCGGGGTGTCCGGGGGGAGGGGGACCCCGCGGTCCCCAA
AATCCGGGAGGGGGACGGGGTATCCCCCGTCTGCCGCCGCCGGGGGGGGT
GGAAATGTTTTCTTGCTCCAGTCTGTTGGG
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