mRNA_Ecto-sp13_S_contig6691.17572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6691.17572.1
Unique NamemRNA_Ecto-sp13_S_contig6691.17572.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6691.17572.1 vs. uniprot
Match: D8LPQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ7_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.330e-19
Identity = 53/78 (67.95%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   34 RGRERPPFPPGGVDGAPDGKYDSAGRGSEAVGPNARGGGXGVAPLEPPNNLSGPPGPRKGGRDRAMLGXXXXXSDRPM 267
            RG ERPPFPPGGVDGAP+GKYDSAGRG E VGPNAR   X        NNLSG PGPR+GGR  AMLG      DRPM
Sbjct: 1002 RGSERPPFPPGGVDGAPEGKYDSAGRGPEPVGPNARXXXXXXXXXXXXNNLSGAPGPRQGGR--AMLGGGGGGPDRPM 1077
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6691.17572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPQ7_ECTSI1.330e-1967.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6691contigEcto-sp13_S_contig6691:6632..7534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size299
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.7579494-CDS-Ecto-sp13_S_contig6691:6633..68241681463919.7579494-CDS-Ecto-sp13_S_contig6691:6633..6824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6691 6634..6824 -
1681463919.7692764-CDS-Ecto-sp13_S_contig6691:7428..75341681463919.7692764-CDS-Ecto-sp13_S_contig6691:7428..7534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6691 7429..7534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6691.17572.1prot_Ecto-sp13_S_contig6691.17572.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6691 6634..7534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6691.17572.1

>prot_Ecto-sp13_S_contig6691.17572.1 ID=prot_Ecto-sp13_S_contig6691.17572.1|Name=mRNA_Ecto-sp13_S_contig6691.17572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
GSWRGRGVGGGRGRERPPFPPGGVDGAPDGKYDSAGRGSEAVGPNARGGG
GGVAPLEPPNNLSGPPGPRKGGRDRAMLGGGGGGSDRPMGGPERGPGLE
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mRNA from alignment at Ecto-sp13_S_contig6691:6632..7534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6691.17572.1 ID=mRNA_Ecto-sp13_S_contig6691.17572.1|Name=mRNA_Ecto-sp13_S_contig6691.17572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6691:6632..7534- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGTTGGAGGGGTCGGGGGGTCGGGGGGGGGCGCGGTCGGGAGCGGCC
GCCGTTTCCTCCGGGCGGCGTTGACGGGGCACCAGATGGGAAGTACGACT
CAGCAGGTGAACTTTCTTGCTTTTCCGGGTGTGTGTGGGTGTGTTGGTGG
GAACGCTCTTGTCTTGCGCGCGAAGGAAGAGAAATGCTGTGCTGCCTGCC
CTCTGGGGGTTTTTACACCTCGCCCGGAGTCACGTCGTTGCGCCTTTTAA
TTTCATTCGGTGATGCGTGTGTGTGCTTGACGGATGGGCCGCGGTGTGTG
CTCCTTCTTGACTGAGATACGTATGTGACATGTCAGCGCTACTCCGTGAT
GAGTTCGAGGGCACCAACCATACTTGTCATCCCCTCCCTCTTTAGCAATT
TTGTATCCCTCCCTTGCTGTGTGCATCCGTTGTTTGACAGGGCAAACCGC
GGTTTCAATACCGCCCAGATCGCTTAGCAAAAAGCGGTGTTGTTCAGATC
TCTGCGAGTGTCCGCCCAGGTGGTGATCGATAGCCTTTGGTTTATTTCGA
GCGACAAACACCAGCAACAGTTGATTATGTTTTTTTTTGCGGTAAGAACG
TGTGCCGCAAGGCAGCAGATGGTGCTTGCATGCCGTCCGTCGTAGAAAGA
ATATCACTACACGCGACCCCCGCTCCCGCCCCCGAACACACTGAACAAAC
ACATATGCAGGCCGAGGATCAGAGGCAGTCGGGCCGAACGCTCGTGGCGG
TGGCGGCGGTGTAGCCCCCCTAGAACCTCCCAACAATCTGTCGGGGCCCC
CCGGCCCAAGGAAAGGAGGTCGAGATCGAGCGATGTTAGGAGGGGGAGGA
GGAGGATCCGACCGGCCGATGGGTGGACCGGAGAGAGGGCCAGGGCTAGA
GAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6691:6632..7534-

>mRNA_Ecto-sp13_S_contig6691.17572.1 ID=mRNA_Ecto-sp13_S_contig6691.17572.1|Name=mRNA_Ecto-sp13_S_contig6691.17572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6691:6632..7534- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGTTGGAGGGGTCGGGGGGTCGGGGGGGGGCGCGGTCGGGAGCGGCC
GCCGTTTCCTCCGGGCGGCGTTGACGGGGCACCAGATGGGAAGTACGACT
CAGCAGGCCGAGGATCAGAGGCAGTCGGGCCGAACGCTCGTGGCGGTGGC
GGCGGTGTAGCCCCCCTAGAACCTCCCAACAATCTGTCGGGGCCCCCCGG
CCCAAGGAAAGGAGGTCGAGATCGAGCGATGTTAGGAGGGGGAGGAGGAG
GATCCGACCGGCCGATGGGTGGACCGGAGAGAGGGCCAGGGCTAGAG
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