mRNA_Ecto-sp13_S_contig66905.17567.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66905.17567.1
Unique NamemRNA_Ecto-sp13_S_contig66905.17567.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.570e-13
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:  106 MATPVNPKPFLNELTGKPVMVKLKWGMEYK 195
            MATPVNPKPFLNELTGKPVMVKLKWGMEYK
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYK 30
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A1S3ID19_LINUN (Sm protein F n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3ID19_LINUN)

HSP 1 Score: 64.7 bits (156), Expect = 7.200e-12
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   31 RGVRECGCERRSRVATDKSSEEGQTMAT-PVNPKPFLNELTGKPVMVKLKWGMEYK 195
            RG R C C  R      ++ +E +  +T P+NPKPFLN LTGKPVMVKLKWGMEYK
Sbjct:    6 RGSRCCACAERVESVRKRNRQEKEMASTLPMNPKPFLNGLTGKPVMVKLKWGMEYK 61
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A2I0AWL2_9ASPA (Putative small nuclear ribonucleoprotein F n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AWL2_9ASPA)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-11
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   88 SEEGQTMATPVNPKPFLNELTGKPVMVKLKWGMEYK 195
            +E+G   + PVNPKPFLN LTGKPV+VKLKWGMEYK
Sbjct:   41 AEQGSDQSVPVNPKPFLNNLTGKPVIVKLKWGMEYK 76
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A218XIQ4_PUNGR (Sm protein F n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218XIQ4_PUNGR)

HSP 1 Score: 63.2 bits (152), Expect = 5.880e-11
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   91 EEGQTMATPVNPKPFLNELTGKPVMVKLKWGMEYK 195
            E G T   PVNPKPFLN LTGKPV+VKLKWGMEYK
Sbjct:   59 ERGDTSTIPVNPKPFLNNLTGKPVIVKLKWGMEYK 93
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A177WM22_BATDL (Sm protein F n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WM22_BATDL)

HSP 1 Score: 60.8 bits (146), Expect = 7.180e-11
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:  115 PVNPKPFLNELTGKPVMVKLKWGMEYK 195
            PVNPKPFLNELTGKP+MVKLKWGMEYK
Sbjct:    5 PVNPKPFLNELTGKPIMVKLKWGMEYK 31
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A6I9KAW7_CHRAS (Sm protein F n=2 Tax=Eutheria TaxID=9347 RepID=A0A6I9KAW7_CHRAS)

HSP 1 Score: 61.6 bits (148), Expect = 9.660e-11
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   70 VATDKSSE---EGQTMATPVNPKPFLNELTGKPVMVKLKWGMEYK 195
            V  D S +   EG  ++ P+NPKPFLN LTGKPVMVKLKWGMEYK
Sbjct:    9 VVADNSDDAFLEGLCVSLPLNPKPFLNGLTGKPVMVKLKWGMEYK 53
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A1S4C443_TOBAC (Sm protein F n=23 Tax=Magnoliopsida TaxID=3398 RepID=A0A1S4C443_TOBAC)

HSP 1 Score: 60.5 bits (145), Expect = 1.630e-10
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:  106 MATPVNPKPFLNELTGKPVMVKLKWGMEYK 195
            M+ PVNPKP+LN LTGKPVMVKLKWGMEYK
Sbjct:    1 MSVPVNPKPYLNNLTGKPVMVKLKWGMEYK 30
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A4D9EQG6_9SAUR (Sm protein F n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9EQG6_9SAUR)

HSP 1 Score: 61.2 bits (147), Expect = 1.640e-10
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  103 TMATPVNPKPFLNELTGKPVMVKLKWGMEYK 195
            TM+ P+NPKPFLN LTGKPVMVKLKWGMEYK
Sbjct:   31 TMSLPLNPKPFLNGLTGKPVMVKLKWGMEYK 61
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A199VBT5_ANACO (Sm protein F n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VBT5_ANACO)

HSP 1 Score: 59.3 bits (142), Expect = 1.720e-10
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:  109 ATPVNPKPFLNELTGKPVMVKLKWGMEYK 195
            A PVNPKPFLN LTGKPV+VKLKWGMEYK
Sbjct:    3 AVPVNPKPFLNNLTGKPVIVKLKWGMEYK 31
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BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A0D9S0Q8_CHLSB (Sm protein F n=4 Tax=Boreoeutheria TaxID=1437010 RepID=A0A0D9S0Q8_CHLSB)

HSP 1 Score: 61.2 bits (147), Expect = 1.880e-10
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  103 TMATPVNPKPFLNELTGKPVMVKLKWGMEYK 195
            TM+ P+NPKPFLN LTGKPVMVKLKWGMEYK
Sbjct:   37 TMSLPLNPKPFLNGLTGKPVMVKLKWGMEYK 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI8.570e-13100.00Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A1S3ID19_LINUN7.200e-1258.93Sm protein F n=1 Tax=Lingula unguis TaxID=7574 Rep... [more]
A0A2I0AWL2_9ASPA2.700e-1175.00Putative small nuclear ribonucleoprotein F n=1 Tax... [more]
A0A218XIQ4_PUNGR5.880e-1180.00Sm protein F n=1 Tax=Punica granatum TaxID=22663 R... [more]
A0A177WM22_BATDL7.180e-1196.30Sm protein F n=2 Tax=Batrachochytrium dendrobatidi... [more]
A0A6I9KAW7_CHRAS9.660e-1166.67Sm protein F n=2 Tax=Eutheria TaxID=9347 RepID=A0A... [more]
A0A1S4C443_TOBAC1.630e-1086.67Sm protein F n=23 Tax=Magnoliopsida TaxID=3398 Rep... [more]
A0A4D9EQG6_9SAUR1.640e-1087.10Sm protein F n=1 Tax=Platysternon megacephalum Tax... [more]
A0A199VBT5_ANACO1.720e-1089.66Sm protein F n=1 Tax=Ananas comosus TaxID=4615 Rep... [more]
A0A0D9S0Q8_CHLSB1.880e-1087.10Sm protein F n=4 Tax=Boreoeutheria TaxID=1437010 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66905contigEcto-sp13_S_contig66905:170..364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.6
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D7FWG1
Preferred nameSNRPF
Model size195
KEGG koko:K11098
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904,GO:1990935
Exons1
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsKOG3482@1,KOG3482@2759
Cds size195
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.684728-CDS-Ecto-sp13_S_contig66905:169..3641681463919.684728-CDS-Ecto-sp13_S_contig66905:169..364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66905 170..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66905.17567.1prot_Ecto-sp13_S_contig66905.17567.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66905 170..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66905.17567.1

>prot_Ecto-sp13_S_contig66905.17567.1 ID=prot_Ecto-sp13_S_contig66905.17567.1|Name=mRNA_Ecto-sp13_S_contig66905.17567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
GRSKRDCKDSRGVRECGCERRSRVATDKSSEEGQTMATPVNPKPFLNELT
GKPVMVKLKWGMEYK
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mRNA from alignment at Ecto-sp13_S_contig66905:170..364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66905.17567.1 ID=mRNA_Ecto-sp13_S_contig66905.17567.1|Name=mRNA_Ecto-sp13_S_contig66905.17567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66905:170..364+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGATCAAAACGCGATTGCAAAGACAGTAGGGGCGTTCGGGAGTGCGG
CTGCGAGAGGCGAAGCCGGGTAGCTACAGATAAGAGCAGCGAAGAGGGGC
AGACAATGGCGACACCCGTGAACCCGAAGCCCTTCTTGAATGAGCTCACA
GGGAAGCCGGTGATGGTGAAGCTGAAGTGGGGCATGGAATACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66905:170..364+

>mRNA_Ecto-sp13_S_contig66905.17567.1 ID=mRNA_Ecto-sp13_S_contig66905.17567.1|Name=mRNA_Ecto-sp13_S_contig66905.17567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66905:170..364+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGATCAAAACGCGATTGCAAAGACAGTAGGGGCGTTCGGGAGTGCGG
CTGCGAGAGGCGAAGCCGGGTAGCTACAGATAAGAGCAGCGAAGAGGGGC
AGACAATGGCGACACCCGTGAACCCGAAGCCCTTCTTGAATGAGCTCACA
GGGAAGCCGGTGATGGTGAAGCTGAAGTGGGGCATGGAATACAAG
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