mRNA_Ecto-sp13_S_contig6689.17563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6689.17563.1
Unique NamemRNA_Ecto-sp13_S_contig6689.17563.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6689.17563.1 vs. uniprot
Match: A0A6H5L6W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W9_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 4.910e-59
Identity = 94/107 (87.85%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 MNNKCFQRLALPLLLAGALSGFAAVDATNPCLDSEAEEFKCWLNPGELHLNLAGCAITDSDAQDLLTCVDRVSHDPVNEVSLGHNELTQLPDGVFADLTALRFLYLD 321
            MNN CFQRLALPLL AGALSGFA+VDA NPCLD  AEEFKCWLNPGELHLNL GC ITDSDAQDL TCVD VSHDPVNEVSLG N+LTQLPDGVFADLT LRFLYLD
Sbjct:    1 MNNTCFQRLALPLLAAGALSGFASVDAINPCLDPAAEEFKCWLNPGELHLNLIGCDITDSDAQDLSTCVDSVSHDPVNEVSLGQNKLTQLPDGVFADLTYLRFLYLD 107
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BLAST of mRNA_Ecto-sp13_S_contig6689.17563.1 vs. uniprot
Match: D7FSS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS8_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 9.040e-57
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:    1 MNNKCFQRLALPLLLAGALSGFAAVDATNPCLDSEAEEFKCWLNPGELHLNLAGCAITDSDAQDLLTCVDRVSHDPVNEVSLGHNELTQLPDGVFADLTALRFLYLDE 324
            M NKCFQ+LALPLL+AGALSGFAAVDA NPCLD EA E KCWLNPGELHLNLAGCAITDSDAQDL  CVD VSHDPVNEVSLG+NELTQLPDGVFADLTALRFLYL+E
Sbjct:    1 MKNKCFQKLALPLLVAGALSGFAAVDAINPCLDPEAIEHKCWLNPGELHLNLAGCAITDSDAQDLSACVDSVSHDPVNEVSLGYNELTQLPDGVFADLTALRFLYLEE 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6689.17563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6W9_9PHAE4.910e-5987.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSS8_ECTSI9.040e-5788.89Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6689contigEcto-sp13_S_contig6689:4505..7672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score201.8
Seed ortholog evalue3.5e-49
Seed eggNOG ortholog2880.D7FSS8
Preferred nameISLR2
Model size720
Hectar predicted targeting categorysignal peptide
GOsGO:0001558,GO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0007155,GO:0007275,GO:0007399,GO:0008150,GO:0008361,GO:0009986,GO:0009987,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0016043,GO:0016192,GO:0022008,GO:0022603,GO:0022604,GO:0022610,GO:0030141,GO:0030154,GO:0030307,GO:0030516,GO:0031091,GO:0031093,GO:0031344,GO:0031346,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0034774,GO:0040008,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046903,GO:0048518,GO:0048522,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060205,GO:0060284,GO:0061387,GO:0065007,GO:0065008,GO:0070013,GO:0071840,GO:0090066,GO:0097708,GO:0099503,GO:0120035,GO:2000026
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-09_001490.1
Cds size720
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.3529584-CDS-Ecto-sp13_S_contig6689:4504..45831681463919.3529584-CDS-Ecto-sp13_S_contig6689:4504..4583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6689 4505..4583 +
1681463919.365725-CDS-Ecto-sp13_S_contig6689:5461..55311681463919.365725-CDS-Ecto-sp13_S_contig6689:5461..5531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6689 5462..5531 +
1681463919.376383-CDS-Ecto-sp13_S_contig6689:5999..63771681463919.376383-CDS-Ecto-sp13_S_contig6689:5999..6377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6689 6000..6377 +
1681463919.3875475-CDS-Ecto-sp13_S_contig6689:6715..68591681463919.3875475-CDS-Ecto-sp13_S_contig6689:6715..6859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6689 6716..6859 +
1681463919.3990858-CDS-Ecto-sp13_S_contig6689:7623..76721681463919.3990858-CDS-Ecto-sp13_S_contig6689:7623..7672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6689 7624..7672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6689.17563.1prot_Ecto-sp13_S_contig6689.17563.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6689 4505..7672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6689.17563.1

>prot_Ecto-sp13_S_contig6689.17563.1 ID=prot_Ecto-sp13_S_contig6689.17563.1|Name=mRNA_Ecto-sp13_S_contig6689.17563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MNNKCFQRLALPLLLAGALSGFAAVDATNPCLDSEAEEFKCWLNPGELHL
NLAGCAITDSDAQDLLTCVDRVSHDPVNEVSLGHNELTQLPDGVFADLTA
LRFLYLDENSLTSLPSEAFSGMSLLQRLYLDNNDLSELPEGVFDGLSSLE
ELDLGSNALSALDNGVFDGLGALQKLSLDDNSLGGIDGGVFDDLESLQQL
QLQDNQLSTLPRGLFVVLSGLTHLDLSNNPDLQCLPTPG*
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mRNA from alignment at Ecto-sp13_S_contig6689:4505..7672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6689.17563.1 ID=mRNA_Ecto-sp13_S_contig6689.17563.1|Name=mRNA_Ecto-sp13_S_contig6689.17563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6689:4505..7672+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAACAAGTGTTTTCAGAGATTGGCGTTGCCACTGCTCTTAGCCGG
CGCCTTGAGCGGGTTCGCTGCAGTAGACGGTGAGTGCTTGGCTCTATACG
ATTATGTTCGAGGGAACAAAGAGCATTGGTATCATCATGGGGTTGTTTGA
ACAGCTTTCGCTGTCGACCACGGATTCGATTTCTGTGTGTTAGAGCATTC
GAAGATTTCCTCGGTTGGCGTTTTCTGCCCGTCCTAGGAGTATGCATGAG
ATTTCTTGTTTACACCTAGCTTTGCAGAGATGGGTCTCGAAAAAAGGTGT
TGCACAAATGCTGAAAGGCTTCCACGGCGTATTCTTAACACATGCATACT
TTCGTCCTTGAGAACGCGCGCATCGAAACTGTGCATGCATTACTTCTAAT
GGCACCTTGTGGATGTAGAGTAAAAACCTGTTATCTCTCGAACTTCGTAG
TGTGTGTTTTGGCACTTCTCCGCCTGTAGAGGTAGGTATCACGGTGGCCC
CACAGCTACAAAGGACGACGTCTTCGAAAGCACGGTGGCGGTCACAATAC
CCACGACTGTTTTAGGGCGCTCTCATTCTCTACACCTCTTGATGCCCATG
TACTCCCAGGAACTCAAGGCTTTCGTGGAGTCCGAATTTATGCTTGTATT
TTTTCTTAGTGCACGGTAGATGACCACTTGCTGACATCTGCTAAAACGCC
ATTCACACTCATTGGGATCAGAATCGGTACCTGCAAGCCCGGCTCGACGG
CTGAAAATCCGGGGCCATCTCTCTTACGGCTTTCAGATCCTTGCCAGTGT
GTAATGGACAGTCGTGATGTCAGGCATTGGTTGACCGAATGACATGCATG
TGCCGCCCACATCCCTCCTCCCTCTTTTCCTCCTCCCTCTTTTCCTCCTC
CCTCTTTTCCTCCTCCCTCTTTTCCTCCTCCACTTCTCTCGGTGGCCTCT
CCGGCAGCCACCAACCCCTGCCTCGACTCCGAAGCTGAGGAATTCAAATG
CTGGCTCAACCCGGGGGAACTGCATCTGTAAGGCTGTTGGATAGCGCGAA
ACCTACCTCGTTGTGACACGTTGGCAGGTAGCACAATAGAATGTCGTCAA
ATCACGCTTGTTGTTCTTCACCTCCTATGGGCATACGTGAAACTGGAAAA
GTATTGCGGAGCAGAGACAATAAAGATAATTTTAACTATGGCGATACCAA
TCGACGGTACTCTTGACACGTGTTCGCCCCAAAATTAATCTTCCAAGGGT
CAGTGGCATGTTGACAGACTCCAACATGCTGAGCACAAAGTCAGCATCTA
GAGGCTACCTAGTGCACGGCCATTGAGCCTGAAACACGGTTTTTGACGTA
CACGCTGCGCATTTGTCCGAGAAAACGTGTAGGCACTCAGCAACAGCGCT
GTCAACGGCCGACAGCGCGCATCGGTCGTCCACCCTGACTATCGCTCTGG
TTCCCTGCTGGGCGTGACACATTCATATCTTGTCCGTTTCTTCAGCAACC
TGGCAGGGTGTGCCATAACGGACAGCGACGCGCAGGATCTCTTGACATGT
GTGGACAGAGTTTCCCATGACCCTGTCAACGAGGTCTCGCTAGGACACAA
CGAGTTGACACAGCTGCCAGACGGAGTCTTCGCCGACTTGACCGCCTTAC
GCTTCCTCTACCTCGACGAGAACTCACTGACCAGCCTACCGTCCGAGGCT
TTCAGCGGCATGTCTCTCCTCCAGCGGCTATACCTTGACAACAACGACCT
CTCCGAGCTCCCTGAGGGGGTTTTCGACGGGCTGTCGTCGCTGGAAGAGT
TGGACCTGGGGTCGAACGCTCTTTCTGCGCTTGACAATGGCGTTTTCGAC
GGCCTCGGAGCGCTCCAAAAGCTGTGCGTCCATACGTTGCTTCGAAGCTT
TTTAAATTTCTGCTAGCAGAAGGCAGCAAAGCGGCCATTTCTCGGCACGT
GTCTTGTAGACCAAGCCGCTAGCTTTCGCTCCCCCGTTAATATGAGCATT
TTTCGTCGAGTATTACCTGTCTTGTTCGAATTCGTTGTAGAAGGAGCGAC
CTGGGCACCGCTCTATCGTAACCGTGTCTATTTATTCTACTTTCCGACGT
CAAAGGTGTTCATCGTTTCGAACCCGACATGTTCCCGAAAGACCCGCTGC
CAAGAGGGTTCATACCTCGAATCTTTCTCGTTGTTGGCCGCCCCGCATCG
TTATCATTTAGATCGCTGGACGACAACTCGCTGGGGGGGATCGACGGAGG
CGTTTTTGATGACCTGGAATCGCTTCAACAGCTGCAACTTCAAGATAACC
AGCTGTCCACCTTGCCACGAGGGTTGTTCGTCGTTCTCTCCGGCTTGACT
CACCTGTAAGTCGATCGGCAAGGCAGTCTTATTATAGGGCAAGGCGTCTC
ATTGCCGGTACCAATCCCGTGCGCCCGCATCCGGGCATAGATTCGGGCCA
TGGTGACCACCCATCTGGTCTTTAGTGCCCTGGTAAGGATTCCTACACAA
GACGAGGCGTTTCGCGTTGGTGTTAGGTTTTTAAGGGGCACACAAGACCG
TATCCGTCAGAATGCGACGTTTGTACCACACTTGGTTTTGTTTGGTGCAT
GGCTCTCCCGACTCGACGTGTCTGGGTGTGCGAAGCTCTTCGGCTTAAGA
CCAAGCATATATCACAGGAAATATTAAAATGACTGTGGATAGCGTCATTG
TTGTTCACCTTTGAAGTCCTGACACAAGAAGACCGACGGCACGAATATTT
TTGAAACCTCCCGGCGAAATGCAAGGCCTAAGGCCATGCGTCTTTCGGTG
TGGCATTGGAGATTAAATATGGCCATGAAATCATTTCCACATCGAAAGAA
TATGCTAGTGGCGGCAGCGCGTGGATTTCTGTCATGCCCCCGACCAGGGC
CTCACCCAACACGGTTTGACATTTGCGGGCAGTTCGGTTTCTGCACCCCT
TCCGTAGACCAACCTAGATTGTAGGGCTGGGTGGAAGCAATACAGCTGTG
GCCAACGACCCTTGGATCAGTGTCGCCGTATCGGAAACTTGATTTGACAA
TGGGGCGTTTTCGTGCGCCCCCCACGCGGTCATGTTCTCGCTCCGCCTTT
GTTGTGTGTGCCGCTGCAGGGATTTGAGCAACAACCCGGACCTGCAATGC
CTCCCCACGCCAGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6689:4505..7672+

>mRNA_Ecto-sp13_S_contig6689.17563.1 ID=mRNA_Ecto-sp13_S_contig6689.17563.1|Name=mRNA_Ecto-sp13_S_contig6689.17563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6689:4505..7672+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAACAAGTGTTTTCAGAGATTGGCGTTGCCACTGCTCTTAGCCGG
CGCCTTGAGCGGGTTCGCTGCAGTAGACGCCACCAACCCCTGCCTCGACT
CCGAAGCTGAGGAATTCAAATGCTGGCTCAACCCGGGGGAACTGCATCTC
AACCTGGCAGGGTGTGCCATAACGGACAGCGACGCGCAGGATCTCTTGAC
ATGTGTGGACAGAGTTTCCCATGACCCTGTCAACGAGGTCTCGCTAGGAC
ACAACGAGTTGACACAGCTGCCAGACGGAGTCTTCGCCGACTTGACCGCC
TTACGCTTCCTCTACCTCGACGAGAACTCACTGACCAGCCTACCGTCCGA
GGCTTTCAGCGGCATGTCTCTCCTCCAGCGGCTATACCTTGACAACAACG
ACCTCTCCGAGCTCCCTGAGGGGGTTTTCGACGGGCTGTCGTCGCTGGAA
GAGTTGGACCTGGGGTCGAACGCTCTTTCTGCGCTTGACAATGGCGTTTT
CGACGGCCTCGGAGCGCTCCAAAAGCTATCGCTGGACGACAACTCGCTGG
GGGGGATCGACGGAGGCGTTTTTGATGACCTGGAATCGCTTCAACAGCTG
CAACTTCAAGATAACCAGCTGTCCACCTTGCCACGAGGGTTGTTCGTCGT
TCTCTCCGGCTTGACTCACCTGGATTTGAGCAACAACCCGGACCTGCAAT
GCCTCCCCACGCCAGGGTAA
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