mRNA_Ecto-sp13_S_contig6687.17561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6687.17561.1
Unique NamemRNA_Ecto-sp13_S_contig6687.17561.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6687.17561.1 vs. uniprot
Match: A0A6H5L661_9PHAE (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L661_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.220e-9
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = -2 
Query:  557 QGVQFYTRVKTVTSSWPYNKDGXXXXXXPSKKSHGVSTAMPTHS 688
            +GV FYTRVKTVTSSWPY+K  XXXXXX SKKSHGVSTAMPTHS
Sbjct:  465 EGVHFYTRVKTVTSSWPYDKXXXXXXXXSSKKSHGVSTAMPTHS 508
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6687.17561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L661_9PHAE2.220e-986.36Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6687contigEcto-sp13_S_contig6687:998..1854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size857
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.1792428-UTR-Ecto-sp13_S_contig6687:997..12131681463919.1792428-UTR-Ecto-sp13_S_contig6687:997..1213Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6687 998..1213 +
1681463919.2040675-UTR-Ecto-sp13_S_contig6687:1660..18541681463919.2040675-UTR-Ecto-sp13_S_contig6687:1660..1854Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6687 1661..1854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.1936357-CDS-Ecto-sp13_S_contig6687:1213..16601681463919.1936357-CDS-Ecto-sp13_S_contig6687:1213..1660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6687 1214..1660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6687.17561.1prot_Ecto-sp13_S_contig6687.17561.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6687 1214..1660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6687.17561.1

>prot_Ecto-sp13_S_contig6687.17561.1 ID=prot_Ecto-sp13_S_contig6687.17561.1|Name=mRNA_Ecto-sp13_S_contig6687.17561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MWVTAVSQRLEDRFQLEVSSNITPFQRKKIYKIYLSVRQELLHGRPIHTR
KASASGGDMVLTPSNQREGFNNRQTATSITGAPDPNHISRGALLPPCAWL
GCCCCCCCCCGSSSCASASPWRLRVISWTARLRLRLRLCCTATTMSRS*
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mRNA from alignment at Ecto-sp13_S_contig6687:998..1854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6687.17561.1 ID=mRNA_Ecto-sp13_S_contig6687.17561.1|Name=mRNA_Ecto-sp13_S_contig6687.17561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=857bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6687:998..1854+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTTGCTGGCCTACACCAAGCAAACCTCTACATTACAGTGCCACCAAAC
GCCAGAATCACAGGCGCATGCCAGTGGTAGCCGAGTTGATCGGCGAGCTA
GCCAGCCGCTCAGCGACGGCACCTCCTTTCGAGAAACATAATGCTGGTTG
TCCTTGATAGTGGCGCCCACAACTAAATCGCCAATCGGTACGACTCCTTT
TCCCCACAGAAAAACGATGTGGGTGACAGCAGTATCGCAACGCCTGGAGG
ATCGCTTCCAGCTGGAGGTCTCATCAAACATTACACCCTTTCAACGAAAA
AAAATATACAAAATCTACTTGTCAGTTCGTCAAGAACTATTGCATGGCCG
ACCAATACACACACGGAAAGCATCCGCAAGCGGTGGTGATATGGTTCTCA
CACCAAGCAACCAGCGGGAGGGGTTCAATAACCGGCAGACCGCTACTTCA
ATTACCGGTGCCCCCGATCCTAACCACATTTCTAGGGGAGCGTTGTTACC
ACCATGTGCTTGGCTAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGGA
GCTCTAGCTGTGCGTCGGCATCGCCGTGGAGACTCCGTGTGATTTCTTGG
ACGGCCCGTCTCCGTCTCCGTCTCCGTCTTTGTTGTACGGCCACGACGAT
GTCACGGTCTTGACGCGGGTGTAGAACTGCACTCCCTGTTTTCGACAGTT
ACGTGTACGCGTGCGTGTAGGGCGCCGTGTGGCACAAAGAAAAGGATTGG
CGCAACAGCAGAAGCTCAAAGACAAAAAATTGCAAGACCAAGAATGTCCG
AGGTCAGCCGACCAAACACTTCGCCAGCTTTACTAGTGAGCATCGTTGAC
GTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6687:998..1854+

>mRNA_Ecto-sp13_S_contig6687.17561.1 ID=mRNA_Ecto-sp13_S_contig6687.17561.1|Name=mRNA_Ecto-sp13_S_contig6687.17561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6687:998..1854+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGGTGACAGCAGTATCGCAACGCCTGGAGGATCGCTTCCAGCTGGA
GGTCTCATCAAACATTACACCCTTTCAACGAAAAAAAATATACAAAATCT
ACTTGTCAGTTCGTCAAGAACTATTGCATGGCCGACCAATACACACACGG
AAAGCATCCGCAAGCGGTGGTGATATGGTTCTCACACCAAGCAACCAGCG
GGAGGGGTTCAATAACCGGCAGACCGCTACTTCAATTACCGGTGCCCCCG
ATCCTAACCACATTTCTAGGGGAGCGTTGTTACCACCATGTGCTTGGCTA
GGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGGAGCTCTAGCTGTGCGTC
GGCATCGCCGTGGAGACTCCGTGTGATTTCTTGGACGGCCCGTCTCCGTC
TCCGTCTCCGTCTTTGTTGTACGGCCACGACGATGTCACGGTCTTGA
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