prot_Ecto-sp13_S_contig12056.1755.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12056.1755.1
Unique Nameprot_Ecto-sp13_S_contig12056.1755.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length112
Homology
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: D7G0T3_ECTSI (Retinoblastoma binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 1.870e-70
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0
Query:    1 DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRPELIRVICLDSPIMSALV 112
            DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEP RPELIRVICLDSPIMSAL+
Sbjct:    7 DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPPRPELIRVICLDSPIMSALM 118          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: UPI000E6E39BF (retinoblastoma-binding protein 5 homolog n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E39BF)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-18
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 0
Query:    3 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 88
            F +  P+  D  L   +  A  CCF KRG  LAVG   G +VIWDF+TRGI +V+ AH   I +LSW+R GR+LLSAS D  +  W
Sbjct:    9 FGQNYPEEFDGSLDC-ISLAVTCCFNKRGTLLAVGCNDGRIVIWDFLTRGIAKVISAHVHPICSLSWSRSGRKLLSASTDNNVCVW 93          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A1U7LJ68_NEOID (Set1 complex component swd1 n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LJ68_NEOID)

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-18
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 0
Query:    1 DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRPELIRVICLDSPIMSA 110
            DPFA+  P+ + + L+YG   AT   F  RG +LA G A G VVIWDFVT GI R++  H R + ++ W+R GR LLSA+ D R   W L     +  R +  ++PI  A
Sbjct:    8 DPFAQDYPESLTASLAYG--HATCARFSPRGDHLAAGLADGAVVIWDFVTAGISRLMRGHTRTVQSVCWSRDGRFLLSAARDWRTVLWDLADGSRK--RSVSFEAPIWGA 113          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A7R8ZH99_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZH99_9CRUS)

HSP 1 Score: 86.7 bits (213), Expect = 1.670e-17
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    3 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 88
            F +T PD  D  +   +  A  C F  RG+ LAVG   G VVIWDFVTRGI RV+ AH   + ALSW+R G +LLS S D  +  W
Sbjct:   39 FGQTYPDEFDGSMDC-ISVALTCAFNPRGSLLAVGCNDGRVVIWDFVTRGIARVISAHVHPVAALSWSRSGHKLLSTSTDNTVCIW 123          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: UPI0014259051 (retinoblastoma-binding protein 5-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259051)

HSP 1 Score: 86.3 bits (212), Expect = 2.070e-17
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 0
Query:    3 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 88
            F +  P+  D  L   +  A  CCF KRG+ LAVG   G +VIWDF+TRGI +++ AH   + +LSW+R G +LLSAS D  +  W
Sbjct:    9 FGQNYPEESDGTLDC-ISIALTCCFNKRGSLLAVGCNDGRIVIWDFLTRGICKIISAHIHPVCSLSWSRNGHKLLSASTDNMVSIW 93          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: UPI001B8873D8 (retinoblastoma-binding protein 5 homolog isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8873D8)

HSP 1 Score: 85.9 bits (211), Expect = 2.830e-17
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 0
Query:    3 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRPELIRVICLDSPIM 108
            F +  P+  D  L   V  A  CCF ++G  LAVG   G +VIWDF+TRGI +V+ AH   + +LSW R  RRLLSA  D  +  W +     E I+V    SP++
Sbjct:    9 FGQNHPEDFDGALDC-VSIAVTCCFNRQGTLLAVGCNDGRIVIWDFLTRGIAKVITAHVHPVCSLSWNRNSRRLLSAGTDNTVSVWDILTG--ESIKVYRFPSPVL 111          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A087UXA4_STEMI (Retinoblastoma-binding protein 5 (Fragment) n=4 Tax=Entelegynae TaxID=74971 RepID=A0A087UXA4_STEMI)

HSP 1 Score: 79.7 bits (195), Expect = 5.370e-17
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0
Query:    3 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 88
            F +  P+  D  L   +  A  C F K G  LAVG   G +V+WDF+TRGI +++ AH   + +LSW+R G +LLSAS D  +  W
Sbjct:    9 FGQNYPEEFDGALDC-ISLAVTCAFNKHGTLLAVGCNDGRIVLWDFLTRGIAKIICAHIHPVCSLSWSRSGHKLLSASTDNSVSIW 93          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A6S7HU14_PARCT (Retinoblastoma-binding 5 homolog (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HU14_PARCT)

HSP 1 Score: 79.7 bits (195), Expect = 5.650e-17
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    3 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 88
            F  + P+  D  L   V  A  C F +RG  LAVG   G +VIWDF+TRGI +++ AH   + ++SW+R G +LLSAS D  +  W
Sbjct:    9 FGPSYPEEYDGTLDC-VSVAITCSFNRRGTLLAVGCNDGRIVIWDFLTRGISKIISAHVHPVCSVSWSRNGYKLLSASSDWCVSVW 93          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A0A9W5Q1_LYGHE (Retinoblastoma-binding protein 5 n=2 Tax=Mirini TaxID=236659 RepID=A0A0A9W5Q1_LYGHE)

HSP 1 Score: 84.3 bits (207), Expect = 9.180e-17
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    3 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 88
            F +  P+  D  L   V  A  C F KRG  LAVG   G +VIWDF+TRGI +V+ AH   + +LSW+RGG +LLSAS D     W
Sbjct:    9 FGQNYPEEFDGSLDC-VSLAITCAFNKRGTLLAVGCNDGRIVIWDFLTRGIAKVITAHMHPVCSLSWSRGGHKLLSASTDNNCCIW 93          
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A699ZYT7_HAELA (WD_REPEATS_REGION domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZYT7_HAELA)

HSP 1 Score: 78.6 bits (192), Expect = 9.750e-17
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 0
Query:    1 DPFAKT-VPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRP 95
            DPF    +P+ ++  L +G    T   F +RG  LA G   G VV+WDF TRG+ RV+E H  ++  LSW+R GR L S + D+ L  W +   RP
Sbjct:    7 DPFQSVQLPEVIEEYLEHGT--TTCVAFNRRGTLLAAGTQEGQVVLWDFETRGVARVLERHRGSVAGLSWSRNGRYLASVAADKLLVLWDVAQGRP 100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0T3_ECTSI1.870e-7098.21Retinoblastoma binding protein 5 n=1 Tax=Ectocarpu... [more]
UPI000E6E39BF1.560e-1848.84retinoblastoma-binding protein 5 homolog n=1 Tax=C... [more]
A0A1U7LJ68_NEOID1.900e-1842.73Set1 complex component swd1 n=1 Tax=Neolecta irreg... [more]
A0A7R8ZH99_9CRUS1.670e-1748.84Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
UPI00142590512.070e-1745.35retinoblastoma-binding protein 5-like n=1 Tax=Anne... [more]
UPI001B8873D82.830e-1741.51retinoblastoma-binding protein 5 homolog isoform X... [more]
A0A087UXA4_STEMI5.370e-1741.86Retinoblastoma-binding protein 5 (Fragment) n=4 Ta... [more]
A0A6S7HU14_PARCT5.650e-1743.02Retinoblastoma-binding 5 homolog (Fragment) n=1 Ta... [more]
A0A0A9W5Q1_LYGHE9.180e-1747.67Retinoblastoma-binding protein 5 n=2 Tax=Mirini Ta... [more]
A0A699ZYT7_HAELA9.750e-1740.63WD_REPEATS_REGION domain-containing protein (Fragm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 50..89
e-value: 0.0084
score: 25.3
coord: 8..47
e-value: 11.0
score: 10.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 57..98
score: 11.143
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..109
e-value: 4.6E-14
score: 54.0
IPR037850Retinoblastoma-binding protein 5/Swd1PANTHERPTHR44040FAMILY NOT NAMEDcoord: 1..109
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 15..98
score: 12.684
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 21..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12056contigEcto-sp13_S_contig12056:364..1432 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12056.1755.1mRNA_Ecto-sp13_S_contig12056.1755.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12056 364..1432 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12056.1755.1 ID=prot_Ecto-sp13_S_contig12056.1755.1|Name=mRNA_Ecto-sp13_S_contig12056.1755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVT
RGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRPELIRV
ICLDSPIMSALV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR037850RBBP5/Swd1
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf