mRNA_Ecto-sp13_S_contig12056.1755.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12056.1755.1
Unique NamemRNA_Ecto-sp13_S_contig12056.1755.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: D7G0T3_ECTSI (Retinoblastoma binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 1.870e-70
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 1 
Query:    1 DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRPELIRVICLDSPIMSALV 336
            DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEP RPELIRVICLDSPIMSAL+
Sbjct:    7 DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPPRPELIRVICLDSPIMSALM 118
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: UPI000E6E39BF (retinoblastoma-binding protein 5 homolog n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E39BF)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-18
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    7 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 264
            F +  P+  D  L   +  A  CCF KRG  LAVG   G +VIWDF+TRGI +V+ AH   I +LSW+R GR+LLSAS D  +  W
Sbjct:    9 FGQNYPEEFDGSLDC-ISLAVTCCFNKRGTLLAVGCNDGRIVIWDFLTRGIAKVISAHVHPICSLSWSRSGRKLLSASTDNNVCVW 93
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A1U7LJ68_NEOID (Set1 complex component swd1 n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LJ68_NEOID)

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-18
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:    1 DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRPELIRVICLDSPIMSA 330
            DPFA+  P+ + + L+YG   AT   F  RG +LA G A G VVIWDFVT GI R++  H R + ++ W+R GR LLSA+ D R   W L     +  R +  ++PI  A
Sbjct:    8 DPFAQDYPESLTASLAYG--HATCARFSPRGDHLAAGLADGAVVIWDFVTAGISRLMRGHTRTVQSVCWSRDGRFLLSAARDWRTVLWDLADGSRK--RSVSFEAPIWGA 113
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A7R8ZH99_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZH99_9CRUS)

HSP 1 Score: 86.7 bits (213), Expect = 1.670e-17
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    7 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 264
            F +T PD  D  +   +  A  C F  RG+ LAVG   G VVIWDFVTRGI RV+ AH   + ALSW+R G +LLS S D  +  W
Sbjct:   39 FGQTYPDEFDGSMDC-ISVALTCAFNPRGSLLAVGCNDGRVVIWDFVTRGIARVISAHVHPVAALSWSRSGHKLLSTSTDNTVCIW 123
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: UPI0014259051 (retinoblastoma-binding protein 5-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259051)

HSP 1 Score: 86.3 bits (212), Expect = 2.070e-17
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    7 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 264
            F +  P+  D  L   +  A  CCF KRG+ LAVG   G +VIWDF+TRGI +++ AH   + +LSW+R G +LLSAS D  +  W
Sbjct:    9 FGQNYPEESDGTLDC-ISIALTCCFNKRGSLLAVGCNDGRIVIWDFLTRGICKIISAHIHPVCSLSWSRNGHKLLSASTDNMVSIW 93
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: UPI001B8873D8 (retinoblastoma-binding protein 5 homolog isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8873D8)

HSP 1 Score: 85.9 bits (211), Expect = 2.830e-17
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:    7 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRPELIRVICLDSPIM 324
            F +  P+  D  L   V  A  CCF ++G  LAVG   G +VIWDF+TRGI +V+ AH   + +LSW R  RRLLSA  D  +  W +     E I+V    SP++
Sbjct:    9 FGQNHPEDFDGALDC-VSIAVTCCFNRQGTLLAVGCNDGRIVIWDFLTRGIAKVITAHVHPVCSLSWNRNSRRLLSAGTDNTVSVWDILTG--ESIKVYRFPSPVL 111
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A087UXA4_STEMI (Retinoblastoma-binding protein 5 (Fragment) n=4 Tax=Entelegynae TaxID=74971 RepID=A0A087UXA4_STEMI)

HSP 1 Score: 79.7 bits (195), Expect = 5.370e-17
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    7 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 264
            F +  P+  D  L   +  A  C F K G  LAVG   G +V+WDF+TRGI +++ AH   + +LSW+R G +LLSAS D  +  W
Sbjct:    9 FGQNYPEEFDGALDC-ISLAVTCAFNKHGTLLAVGCNDGRIVLWDFLTRGIAKIICAHIHPVCSLSWSRSGHKLLSASTDNSVSIW 93
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A6S7HU14_PARCT (Retinoblastoma-binding 5 homolog (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HU14_PARCT)

HSP 1 Score: 79.7 bits (195), Expect = 5.650e-17
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    7 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 264
            F  + P+  D  L   V  A  C F +RG  LAVG   G +VIWDF+TRGI +++ AH   + ++SW+R G +LLSAS D  +  W
Sbjct:    9 FGPSYPEEYDGTLDC-VSVAITCSFNRRGTLLAVGCNDGRIVIWDFLTRGISKIISAHVHPVCSVSWSRNGYKLLSASSDWCVSVW 93
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A0A9W5Q1_LYGHE (Retinoblastoma-binding protein 5 n=2 Tax=Mirini TaxID=236659 RepID=A0A0A9W5Q1_LYGHE)

HSP 1 Score: 84.3 bits (207), Expect = 9.180e-17
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    7 FAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYW 264
            F +  P+  D  L   V  A  C F KRG  LAVG   G +VIWDF+TRGI +V+ AH   + +LSW+RGG +LLSAS D     W
Sbjct:    9 FGQNYPEEFDGSLDC-VSLAITCAFNKRGTLLAVGCNDGRIVIWDFLTRGIAKVITAHMHPVCSLSWSRGGHKLLSASTDNNCCIW 93
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BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Match: A0A699ZYT7_HAELA (WD_REPEATS_REGION domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZYT7_HAELA)

HSP 1 Score: 78.6 bits (192), Expect = 9.750e-17
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 DPFAKT-VPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVTRGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRP 285
            DPF    +P+ ++  L +G    T   F +RG  LA G   G VV+WDF TRG+ RV+E H  ++  LSW+R GR L S + D+ L  W +   RP
Sbjct:    7 DPFQSVQLPEVIEEYLEHGT--TTCVAFNRRGTLLAAGTQEGQVVLWDFETRGVARVLERHRGSVAGLSWSRNGRYLASVAADKLLVLWDVAQGRP 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12056.1755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0T3_ECTSI1.870e-7098.21Retinoblastoma binding protein 5 n=1 Tax=Ectocarpu... [more]
UPI000E6E39BF1.560e-1848.84retinoblastoma-binding protein 5 homolog n=1 Tax=C... [more]
A0A1U7LJ68_NEOID1.900e-1842.73Set1 complex component swd1 n=1 Tax=Neolecta irreg... [more]
A0A7R8ZH99_9CRUS1.670e-1748.84Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
UPI00142590512.070e-1745.35retinoblastoma-binding protein 5-like n=1 Tax=Anne... [more]
UPI001B8873D82.830e-1741.51retinoblastoma-binding protein 5 homolog isoform X... [more]
A0A087UXA4_STEMI5.370e-1741.86Retinoblastoma-binding protein 5 (Fragment) n=4 Ta... [more]
A0A6S7HU14_PARCT5.650e-1743.02Retinoblastoma-binding 5 homolog (Fragment) n=1 Ta... [more]
A0A0A9W5Q1_LYGHE9.180e-1747.67Retinoblastoma-binding protein 5 n=2 Tax=Mirini Ta... [more]
A0A699ZYT7_HAELA9.750e-1740.63WD_REPEATS_REGION domain-containing protein (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12056contigEcto-sp13_S_contig12056:364..1432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score228.0
Seed ortholog evalue2.1e-57
Seed eggNOG ortholog2880.D7G0T3
Preferred nameRBBP5
Model size336
KEGG koko:K14961
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000922,GO:0001067,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007610,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018027,GO:0018193,GO:0018205,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034401,GO:0034641,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0036211,GO:0040029,GO:0042054,GO:0042393,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044648,GO:0044665,GO:0044666,GO:0044703,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048188,GO:0048468,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097549,GO:0140030,GO:0140034,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1904837,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.histone H3-K4 methylation
EggNOG OGsKOG1273@1,KOG1273@2759
Cds size336
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.6756005-CDS-Ecto-sp13_S_contig12056:363..5471681462640.6756005-CDS-Ecto-sp13_S_contig12056:363..547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12056 364..547 -
1681462640.6901896-CDS-Ecto-sp13_S_contig12056:1280..14321681462640.6901896-CDS-Ecto-sp13_S_contig12056:1280..1432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12056 1281..1432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12056.1755.1prot_Ecto-sp13_S_contig12056.1755.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12056 364..1432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12056.1755.1

>prot_Ecto-sp13_S_contig12056.1755.1 ID=prot_Ecto-sp13_S_contig12056.1755.1|Name=mRNA_Ecto-sp13_S_contig12056.1755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
DPFAKTVPDHVDSVLSYGVEDATVCCFGKRGAYLAVGYATGIVVIWDFVT
RGIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPSRPELIRV
ICLDSPIMSALV
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mRNA from alignment at Ecto-sp13_S_contig12056:364..1432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12056.1755.1 ID=mRNA_Ecto-sp13_S_contig12056.1755.1|Name=mRNA_Ecto-sp13_S_contig12056.1755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1069bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12056:364..1432- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCGTTCGCCAAAACGGTCCCGGACCATGTGGATTCCGTCCTGAGCTA
CGGCGTGGAGGACGCCACAGTGTGCTGCTTCGGCAAGAGGGGGGCCTACC
TGGCGGTGGGATACGCGACGGGGATCGTGGTCATCTGGGACTTCGTTACC
AGGTTAGTGGGGCCCGCGCCGGGGTGGTGTGCCGGTTCATCGTTAATCTC
GTGAATGTCGTCGGAGTTGGCTTTAGTGAGTGTTTTGCTCTCGTGTTGTT
GTTTTTTCTCTGGGAGGTGTTGTTGGAGCGTGTGTTTATCTGTGGTTCTC
GTGGGCTGGGGAAGATTCGTGTTGCGGTTTCGGGATGCACTGAAGCGTGC
CACACTGTTTGTTTGCACTACTTGGTCCGGGGAAAGCAGAAGTGTGGTAT
TTCGATGTATGCGGCCTTGGGACCAAGGATAAGCGGGCATCCATGTCGAC
GAAACAGCAAGACGTTGTGATTTGCCATTGCGTTGTCCTTGAAACAAGCC
CGTCCCACGAAGCAAGAAACAGACACAACTGAAAACGCGCGATACCCCTT
CGAGACGCCCGCGTCAGCTTGATTGATCTGTGCGGATGCCAGAAGACTAT
GAGCCGAGGACGGAGTATGGTAAGACAACAACAACAACATCAGCTACCAA
GATATCAAACAACGACAACAACATCCACACCATTAACAACGACCACGACC
ACCCTCTCGTGCAGTTTACATTCCCACACACACCGATATGGCGGGACGAA
ACGGTGGACGCACACACGCGCGGTCAAACCTCAAAACCACAACACTAGCG
CTGTTGTCTTTTTTCCCCGCCAGGGTCGAACCGGCACTTCCCACTGATAC
TTCCACTTTGCCGATGCTGCTTCTTATTCGAAAAGAGGCATCGGTCGCGT
GGTAGAGGCGCACGCCAGAGCCATCACGGCTCTCAGTTGGGCAAGGGGCG
GTCGTCGGCTGCTGTCGGCCTCTCACGACCAGCGGCTGCACTACTGGGCA
CTGGAGCCGTCCAGGCCGGAGCTTATCCGGGTCATCTGCCTGGACTCGCC
CATCATGTCGGCTCTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12056:364..1432-

>mRNA_Ecto-sp13_S_contig12056.1755.1 ID=mRNA_Ecto-sp13_S_contig12056.1755.1|Name=mRNA_Ecto-sp13_S_contig12056.1755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12056:364..1432- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCGTTCGCCAAAACGGTCCCGGACCATGTGGATTCCGTCCTGAGCTA
CGGCGTGGAGGACGCCACAGTGTGCTGCTTCGGCAAGAGGGGGGCCTACC
TGGCGGTGGGATACGCGACGGGGATCGTGGTCATCTGGGACTTCGTTACC
AGAGGCATCGGTCGCGTGGTAGAGGCGCACGCCAGAGCCATCACGGCTCT
CAGTTGGGCAAGGGGCGGTCGTCGGCTGCTGTCGGCCTCTCACGACCAGC
GGCTGCACTACTGGGCACTGGAGCCGTCCAGGCCGGAGCTTATCCGGGTC
ATCTGCCTGGACTCGCCCATCATGTCGGCTCTGGTG
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