mRNA_Ecto-sp13_S_contig6673.17546.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: A0A6H5K8F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F3_9PHAE) HSP 1 Score: 203 bits (516), Expect = 8.250e-52 Identity = 136/257 (52.92%), Postives = 156/257 (60.70%), Query Frame = 1
Query: 4 SSSSTESLRAILTGAEAAILDLICAGASIEQWTEWLQTPLEHAVAAGKMDLVVQLAQEGAGGIAVHSAVRRGQEVVVAELAAEAGGIARGAGRERRYSSPYRRMPRSSQHPCAASSPGC*SQRA***VCAPLHVAAEQGYLAAVEALVSAHADLSLRFGDEDRSAMDCAAYVGDVDVMRTLK*HGVGVCDAGATGM----------TPFHIAAAQAQLSAARVLVEAGADARAEDGTGNXXXXLAARTAFQ*MLWLL 744
SSSSTESLRAILTGAEA I DLICAGASIEQWTEWLQTP +HAVAAGK+DL+VQLAQ GAGGI+VHSAVRRG+ + IA G + S + A APLHV AEQG LAAVEALVSAHA+LSLRFGD+D SAMD AAY G VDVMR L HG+ DAGATG TP H+A A + L+ GADA +G LAA+++ M++ L
Sbjct: 6 SSSSTESLRAILTGAEAVIFDLICAGASIEQWTEWLQTPFQHAVAAGKIDLIVQLAQAGAGGISVHSAVRRGEPDESGDTPLH---IAASLG----HHSILTLLLLQEAEVNALDGEDS----------APLHVEAEQGSLAAVEALVSAHANLSLRFGDDDLSAMDRAAYFGHVDVMRVLIQHGIDQSDAGATGADVGAEDCGGDTPLHLAVRSASVDTMAALLRHGADANRVNGDQLSALHLAAKSSAVAMVYSL 245
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: D7FJ89_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ89_ECTSI) HSP 1 Score: 200 bits (509), Expect = 1.420e-50 Identity = 128/210 (60.95%), Postives = 135/210 (64.29%), Query Frame = 1
Query: 1 SSSSSTESLRAILTGAEAAILDLICAGASIEQWTEWLQTPLEHAVAAGKMDLVVQLAQEGAGGIAVHSAVRRGQEVVVAEL---AAEAGGIARGAGRERRYSSPYRRMPRSSQHPCAASSPGC*SQRA***VCAPLHVAAEQGYLAAVEALVSAHADLSLRFGDEDRSAMDCAAYVGDVDVMRTLK*HGVGVCDAGATGMTPFHIAAAQA 621
SSSSSTE LR ILTGAEAAI DLICAGASIEQW EWL+TPLEHAVAAGKMDLVVQLAQ GAGGIAVHSAVRRGQE VVAEL A G LAAVEALVSAHADL+LRFG D+SAMDCAAY G+V+++RTL HGV V DAGATGMTP HIAAAQA
Sbjct: 8 SSSSSTERLRTILTGAEAAIFDLICAGASIEQWAEWLRTPLEHAVAAGKMDLVVQLAQAGAGGIAVHSAVRRGQEAVVAELLRLGASPGEPDESGDTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXSLAAVEALVSAHADLNLRFGGRDQSAMDCAAYFGNVEIIRTLNQHGVDVNDAGATGMTPLHIAAAQA 213
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: A0A6H5JW93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW93_9PHAE) HSP 1 Score: 183 bits (465), Expect = 6.010e-45 Identity = 122/214 (57.01%), Postives = 125/214 (58.41%), Query Frame = 1
Query: 1 SSSSSTESLRAILTGAEAAILDLICAGASIEQWTEWLQTPLEHAVAAGKMDLVVQLAQEGAGGIAVHSAVRRGQEVVVAEL---AAEAGGIARGAGRERRYSSPYRRMPRSSQHPCAASSPGC*SQRA***VCAPLHVAAEQGYLAAVEALVSAHADLSLRFGDEDRSAMDCAAYVGDVDVMRTLK*HGVGVCDAGATGMTPFHIAAAQAQLSA 633
SSSSSTE LR ILTGAEAAI DLICAGASIE W EWL+TPLEHAVAAGK DLVVQLAQ GAGGIAVHSAVRRGQEVVVAEL A G S HADL LRFGDEDRSAMD AYVG VD+MR LK HGV VCD GA MTP HIAAAQAQ+ A
Sbjct: 8 SSSSSTERLRTILTGAEAAIFDLICAGASIEPWAEWLRTPLEHAVAAGKTDLVVQLAQAGAGGIAVHSAVRRGQEVVVAELLRLGASPGEPDESGDTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXSTHADLILRFGDEDRSAMDNTAYVGHVDLMRMLKQHGVDVCDVGAACMTPLHIAAAQAQVPA 217
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: A0A6H5L7B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B7_9PHAE) HSP 1 Score: 176 bits (445), Expect = 1.240e-42 Identity = 119/228 (52.19%), Postives = 142/228 (62.28%), Query Frame = 1
Query: 4 SSSSTESLRAILTGAEAAILDLICAGASIEQWTEWLQTPLEHAVAAGKMDLVVQLAQEGAGGI---AVHSAVRRGQEVVVAELAAEAGGIARGAGRERRYSSPYRRMPRSSQHPCAASSPGC*SQRA***VCAPLHVAAEQGYLAAVEALVSAHADLSLRFGDEDRSAMDCAAYVGDVDVMRTLK*HGVGVCDAGATGMTPFHIAAAQAQLSAARVLVEAGADARAED 678
S++ST+S+R IL G++ AI DL+CAGAS +QWTEWL+TP+E+AVAAG +DLVV+LAQ G G A+ SAVRRG + E IA G + + Q S G R PLH+AA + LA V+ALVSAHADL LRFGD D S MDCAA G VD+M TL HGVGV DA ATGMTP HIAA QAQL A LVEA A+ AE+
Sbjct: 7 STTSTQSIRTILQGSDGAIFDLLCAGASNQQWTEWLRTPVEYAVAAGNLDLVVKLAQAGQAGARNSAMPSAVRRGHDAEPDERGNTPLHIAASLGHDAINALLL------LQKAAVNSLDG--EDRT------PLHLAAGKDSLAGVKALVSAHADLRLRFGDADESPMDCAACFGYVDMMLTLTQHGVGVNDAAATGMTPLHIAAGQAQLPAIDALVEAEANVGAEE 220
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: D7FJ34_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ34_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.410e-33 Identity = 106/242 (43.80%), Postives = 125/242 (51.65%), Query Frame = 1
Query: 19 ESLRAILTGAEAAILDLICAGASIEQWTEWLQTPLEHAVAAGKMDLVVQLAQEGAGGIAVHSAVRRGQEVVVAELAAEAGGIARGAGRERRYSSPYRRMPRSSQHPCAASSPGC*SQRA***VCAPLHVAAEQ---------------------------------GYLAAVEALVSAHADLSLRFGDEDRSAMDCAAYVGDVDVMRTLK*HGVGVCDAGATGMTPFHIAAAQAQLSAARVL 645
++LR IL+G+EAAI DLI SI+QW EWL+TPLEHAVA G MDLVV+LAQ GA AVH AVR+G E VVAEL R+ S P + PL G LAAVEALVSA+AD ++RFGDE++SAMDCA G V +MR L HGVGV DAGAT +TP HIAA +A L A +VL
Sbjct: 6 QNLRTILSGSEAAIFDLIFGTTSIQQWAEWLRTPLEHAVAEGDMDLVVKLAQAGASRSAVHLAVRQGHEAVVAELL---------------------RLGASPSEPDESGD-------------TPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGSLAAVEALVSANADHTVRFGDEEKSAMDCAVCFGHVHIMRALIQHGVGVNDAGATSITPLHIAADRALLPAIQVL 213
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: A0A6H5L6J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J8_9PHAE) HSP 1 Score: 146 bits (368), Expect = 6.140e-33 Identity = 96/201 (47.76%), Postives = 114/201 (56.72%), Query Frame = 3
Query: 723 SVDVVATFLSHGADANKLNGN---------RLSALHLAAKNGAADMVQALLAAGAQPNLRAGEDDKTGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGATRETPVHVATELGSSQGVAILLRHGADANKLDGDQFSALQLAAEGGSAAIVHVLLAEGAQPNLRGGKDGKTALDLAAVGGHTKAVTALLLHRPSLNVTDKL 1298
S D V L GADAN LN L+ALH+A N A +V AL+ AGA +++ GE T ETP+H+AT+LGSS+ VA LL+ AD NKL+GDQ+SAL L AAIVHVLLA GAQPNLRGG+DGKTALDLAA+G H +A TAL+ HR SLN TDKL
Sbjct: 104 SADAVVALLRQGADANNLNAKPSPRHGDNVSLTALHIAVSNEQAGVVDALVEAGADIDVQGGE-------------------------------------TCETPLHLATKLGSSEAVASLLKLEADENKLNGDQYSALHLXXXXXXAAIVHVLLATGAQPNLRGGEDGKTALDLAALGRHVEAATALVQHRASLNATDKL 267
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.230e-16 Identity = 82/242 (33.88%), Postives = 112/242 (46.28%), Query Frame = 1
Query: 1 SSSSSTESLRAILTGAEAAILDLICAGASIEQWTEWLQTPLEHAVAAGKMDLVVQLAQEGAGGIAVHSAVRRGQEVVVAELAAEAGGIARGAGRERRYSSPYRRMPRSSQHPCAASSPGC*--------------SQRA***VCAPLHVAAEQGYLAAVEALVSAHADLSLRFGD-EDRSAMDCAAYVGDVDVMRTLK*HGVGVCDAGATGMTPFHIAAAQAQLSAARVLVEAGADARAEDG 681
S SS S RA L G E I DL+CAG + QW EWL+TPLEHA AG +DLV + + R+ R + +P S+ P AS+ C R P+H++A++G L+AV+AL++A D SLR+G E SA+ AA G V+VM+ L HGV V + G+T H AA + A L+EAGA+ A+ G
Sbjct: 15 SESSEQLSSRAKLRGTEETIFDLVCAGTNRMQWAEWLRTPLEHAAGAGNLDLVTK------------------------------------SYRKLRRAGTTTAIPLSTLLPLVASAISCPLLLRDGAEVDVLDTKGRT------PIHLSAKRGSLSAVQALLAAGGDSSLRYGKGEAFSALGLAARGGHVEVMQALIRHGVDVDAPDSNGLTALHSAATGDAVGAIETLMEAGANIDAQGG 214
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: D7FHH2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH2_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 3.570e-15 Identity = 78/229 (34.06%), Postives = 103/229 (44.98%), Query Frame = 1
Query: 1 SSSSSTESLRAILTGAEAAILDLICAGASIEQWTEWLQTPLEHAVAAGKMDLVVQLAQEGAGGIAVHSAVRRGQEVVVAELAAEAGGIARGAGRERRYSSPYRRMPRSSQHPCAASSPGC*SQRA***VCAPLHVAAEQGYLAAVEALVSAHADLSLRFG-DEDRSAMDCAAYVGDVDVMRTLK*HGVGVCDAGATGMTPFHIAAAQAQLSAARVLVEAGADARAEDGT 684
S SS S RA L G E +I DL+CAG + +W+EWL+TPLEHA AG +DLV +L GAGG A+H A++ GQ+ + L E G ++ AL+ A D S R+G D+ SA+ AA G V+VM+ L HGV V + G T H AA + A L+EAGA A+ GT
Sbjct: 15 SESSHQLSFRAKLRGVEESIFDLVCAGTNRRKWSEWLRTPLEHAAGAGNLDLVTKLQGAGAGGSALHLALKAGQDALARGLL-EMGAPSKEKDDSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLDAGGDSSFRYGKDKAFSALSLAARRGHVEVMQALIRHGVDVNAPDSNGCTALHSAAMGDTVGAINALIEAGAKINAQGGT 242
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 3.440e-12 Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 1 SSSSSTESLRAILTGAEAAILDLICAGASIEQWTEWLQTPLEHAVAAGKMDLVVQLAQEGAGGIAVHSAVRRGQEVVVAEL 243
S SS+ S R+ L G E I DL+CAG + QW EWL+TPLEHA G +DLV +L GAGG A+H A+R GQ+ + EL
Sbjct: 14 SESSNQLSCRSNLRGTEKTIFDLVCAGTNRRQWAEWLRTPLEHAAGVGNIDLVTKLQGAGAGGSALHLALRAGQDALAQEL 94
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Match: D7FJ91_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ91_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 5.250e-12 Identity = 49/130 (37.69%), Postives = 58/130 (44.62%), Query Frame = 2
Query: 152 ISLSSSPKREQEALLCTQR*GEVRRWSLRS*LLRREVSPGEPDESGDTPLHIAACLGHPSILALLLLQDVEVNALDSEYVRLFM*QLNKAILLLSKLWFLPTRI*ASASAMKTDRRWIVLRTSAMWTSCA 541
+++ S+ +R QEA++ LLR SPGEPDESGDTP + L +LWFLPTRI ASASA DRRWIV RTS MWTSCA
Sbjct: 15 VAVHSAVRRGQEAVVAE--------------LLRLGASPGEPDESGDTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGSLAAVELWFLPTRISASASATMIDRRWIVQRTSVMWTSCA 130 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6673.17546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6673.17546.1 >prot_Ecto-sp13_S_contig6673.17546.1 ID=prot_Ecto-sp13_S_contig6673.17546.1|Name=mRNA_Ecto-sp13_S_contig6673.17546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp MVQALLAAGAQPNLRAGEDDKTGLTALHMAISNNNTVVIDALVEAGAEVDback to top mRNA from alignment at Ecto-sp13_S_contig6673:3..2272- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6673.17546.1 ID=mRNA_Ecto-sp13_S_contig6673.17546.1|Name=mRNA_Ecto-sp13_S_contig6673.17546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6673:3..2272- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6673:3..2272- >mRNA_Ecto-sp13_S_contig6673.17546.1 ID=mRNA_Ecto-sp13_S_contig6673.17546.1|Name=mRNA_Ecto-sp13_S_contig6673.17546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6673:3..2272- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |