prot_Ecto-sp13_S_contig12055.1754.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12055.1754.1
Unique Nameprot_Ecto-sp13_S_contig12055.1754.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length108
Homology
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: D8LRH8_ECTSI (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH8_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 5.060e-58
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            +VWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFA FASNGMVLAAKSADGKV    ELVRPPEGSVVGERARVEGSEGEPLTPAQV
Sbjct:  688 KVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAGFASNGMVLAAKSADGKV----ELVRPPEGSVVGERARVEGSEGEPLTPAQV 791          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: B8CA55_THAPS (tRNA-binding domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA55_THAPS)

HSP 1 Score: 129 bits (324), Expect = 7.270e-36
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 0
Query:    1 QVWNHESKEHLYCEEIDVGE-GEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            +VWNHE  + L+CEEIDVGE G PR IASGLREH + ++MQ R VLVVCNLKPAK   F SNGMVLAAKS DGK    VELV PP  + VGER  ++G  GEP +  QV
Sbjct:   34 KVWNHEEADKLFCEEIDVGEEGGPREIASGLREHYSLDDMQDRKVLVVCNLKPAKIVGFTSNGMVLAAKSEDGK---SVELVTPPADAAVGERVFIDGLSGEPFSSTQV 139          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A1E7FWM2_9STRA (Methionine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWM2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.210e-33
Identity = 69/109 (63.30%), Postives = 82/109 (75.23%), Query Frame = 0
Query:    1 QVWNHESKEHLYCEEIDVGEGE-PRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            +VWNHES + L+CEE+DVGE   PR IASGLREH + EEMQ +LVLVVCNLK AK   F+SNGMVLAAK  DGK    VELV PP+GS +GER  ++G  GEP + +QV
Sbjct:  630 KVWNHESADKLFCEEVDVGEESGPRQIASGLREHYSLEEMQDKLVLVVCNLKAAKIVGFSSNGMVLAAKGEDGK---KVELVEPPQGSKIGERVFIDGLSGEPFSSSQV 735          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A7S1D9R7_CYCTE (Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9R7_CYCTE)

HSP 1 Score: 130 bits (328), Expect = 3.060e-33
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 0
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            +VW+H++ ++L+CEEIDVGEG+PR IASGLR+H T E+M G+ VLVVCNLKPA+   F SNGMVLAAK  DGKV    ELV PP+ + VGER  ++G +G P +PAQV
Sbjct:  494 KVWHHQAADNLFCEEIDVGEGDPRQIASGLRQHYTLEDMDGKKVLVVCNLKPARIVGFTSNGMVLAAKL-DGKV----ELVVPPDSAEVGERVAIKGLDGNPFSPAQV 596          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A067CXJ5_SAPPC (tRNA-binding domain-containing protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CXJ5_SAPPC)

HSP 1 Score: 123 bits (308), Expect = 6.970e-33
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 0
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            +VW HE+ + LYCEEIDVGEGEPR IASGL +H + E+MQGR++LV+CNLKP     F S+GMVL A + D      V  V PP  + +GER   EG  GEP TPAQV
Sbjct:   72 KVWKHETADKLYCEEIDVGEGEPRLIASGLVKHYSLEQMQGRMLLVMCNLKPRSLVGFKSHGMVLCAVATDADGSERVAFVEPPANAKIGERIHYEGLSGEPWTPAQV 179          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A024UG59_9STRA (Methionine-tRNA ligase, beta subunit n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG59_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.580e-32
Identity = 62/107 (57.94%), Postives = 73/107 (68.22%), Query Frame = 0
Query:    2 VWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            VW HE+ + LYCEEIDVGE EPR IASGL +H T E+MQGR +LV+CNLKP     F S+GMVL A S +     +V  V PP G+ +GER   EG  GEP TPAQV
Sbjct:   79 VWKHETADKLYCEEIDVGEDEPRQIASGLVKHYTLEQMQGRRLLVMCNLKPRNLVGFKSHGMVLCAVSTNEDGSENVAFVEPPAGAGIGERVMYEGLTGEPWTPAQV 185          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A8J9X9H1_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X9H1_PHATR)

HSP 1 Score: 119 bits (297), Expect = 5.680e-32
Identity = 65/109 (59.63%), Postives = 76/109 (69.72%), Query Frame = 0
Query:    1 QVWNHESKEHLYCEEIDVGEGE-PRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            +VWNHE  + L+CE+ID+GE   PR IASGLR   T EEMQ R+VLVVCNLK  K   F SNGMVLAAKS DG +   VELV PPEG+ +GER  V    G+P +P QV
Sbjct:   10 KVWNHEDADKLFCEQIDLGEDTGPREIASGLRGFYTLEEMQDRMVLVVCNLKGQKMLGFMSNGMVLAAKSEDGAI---VELVAPPEGAQIGERVFVSEMTGDPFSPVQV 115          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A812XFC2_SYMMI (AIMP1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XFC2_SYMMI)

HSP 1 Score: 120 bits (302), Expect = 1.670e-31
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 0
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEG 97
            +VWNHE  E L+CEEIDVGE  PR IASGLR+H + E+M  R V+VVCNLK AK   F+SNGMVLAAK ADG+V    +LV PPE +VVGER  +EG
Sbjct:  128 RVWNHEKAERLFCEEIDVGEDVPRQIASGLRDHYSLEDMHNRKVIVVCNLKEAKLVGFSSNGMVLAAKCADGQV----QLVAPPEDAVVGERVFIEG 220          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A835YVV0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.970e-31
Identity = 69/113 (61.06%), Postives = 75/113 (66.37%), Query Frame = 0
Query:    2 VWNHESKEHLYCEEIDVGEG------EPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            VW+H   E L+CEEI+ G+G       PR +ASGLR H T  EM  RLV VVCNLKPAK A F SNGMVLAA S  GKV    EL+RPP GSVVGER  VEG  G PL P QV
Sbjct:   15 VWHHPDSEKLFCEEIECGDGGDGQGAPPRPVASGLRAHHTLAEMDQRLVCVVCNLKPAKLAGFESNGMVLAA-SGGGKV----ELIRPPAGSVVGERLFVEGLTGAPLNPNQV 122          
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A225VLY1_9STRA (Methionine-tRNA ligase, beta subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLY1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.840e-31
Identity = 65/110 (59.09%), Postives = 75/110 (68.18%), Query Frame = 0
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSA--DGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 108
            +VW HE+ + LYCEEIDVGE EPR IASGL  H T EEMQ R VLV+CNLKP     F S+GMV+ A     DGK +  V  V PP+G+ VGER   EG  GEPL+PAQV
Sbjct:   69 KVWKHETADKLYCEEIDVGEDEPRQIASGLVHHYTLEEMQDRSVLVLCNLKPRNLVGFRSHGMVMCAAVPLEDGKEK--VAFVTPPQGAKVGERVTFEGLTGEPLSPAQV 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH8_ECTSI5.060e-5894.44Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
B8CA55_THAPS7.270e-3663.30tRNA-binding domain-containing protein (Fragment) ... [more]
A0A1E7FWM2_9STRA2.210e-3363.30Methionine--tRNA ligase n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1D9R7_CYCTE3.060e-3361.11Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis ... [more]
A0A067CXJ5_SAPPC6.970e-3356.48tRNA-binding domain-containing protein (Fragment) ... [more]
A0A024UG59_9STRA4.580e-3257.94Methionine-tRNA ligase, beta subunit n=1 Tax=Aphan... [more]
A0A8J9X9H1_PHATR5.680e-3259.63Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A812XFC2_SYMMI1.670e-3163.92AIMP1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A835YVV0_9STRA1.970e-3161.06tRNA-binding domain-containing protein n=1 Tax=Tri... [more]
A0A225VLY1_9STRA2.840e-3159.09Methionine-tRNA ligase, beta subunit n=1 Tax=Phyto... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 3..91
e-value: 1.7E-20
score: 72.9
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 1..94
score: 22.97
NoneNo IPR availableGENE3D2.40.50.140coord: 1..108
e-value: 1.2E-32
score: 115.0
NoneNo IPR availablePANTHERPTHR11586:SF39NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 1..108
NoneNo IPR availablePANTHERPTHR11586FAMILY NOT NAMEDcoord: 1..108
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12055contigEcto-sp13_S_contig12055:1862..2824 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12055.1754.1mRNA_Ecto-sp13_S_contig12055.1754.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12055 1862..2824 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12055.1754.1 ID=prot_Ecto-sp13_S_contig12055.1754.1|Name=mRNA_Ecto-sp13_S_contig12055.1754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNL
KPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEG
EPLTPAQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold