mRNA_Ecto-sp13_S_contig12055.1754.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12055.1754.1
Unique NamemRNA_Ecto-sp13_S_contig12055.1754.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: D8LRH8_ECTSI (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH8_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 5.060e-58
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            +VWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFA FASNGMVLAAKSADGKV    ELVRPPEGSVVGERARVEGSEGEPLTPAQV
Sbjct:  688 KVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAGFASNGMVLAAKSADGKV----ELVRPPEGSVVGERARVEGSEGEPLTPAQV 791
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: B8CA55_THAPS (tRNA-binding domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA55_THAPS)

HSP 1 Score: 129 bits (324), Expect = 7.270e-36
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:    1 QVWNHESKEHLYCEEIDVGE-GEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            +VWNHE  + L+CEEIDVGE G PR IASGLREH + ++MQ R VLVVCNLKPAK   F SNGMVLAAKS DGK    VELV PP  + VGER  ++G  GEP +  QV
Sbjct:   34 KVWNHEEADKLFCEEIDVGEEGGPREIASGLREHYSLDDMQDRKVLVVCNLKPAKIVGFTSNGMVLAAKSEDGK---SVELVTPPADAAVGERVFIDGLSGEPFSSTQV 139
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A1E7FWM2_9STRA (Methionine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWM2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.210e-33
Identity = 69/109 (63.30%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    1 QVWNHESKEHLYCEEIDVGEGE-PRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            +VWNHES + L+CEE+DVGE   PR IASGLREH + EEMQ +LVLVVCNLK AK   F+SNGMVLAAK  DGK    VELV PP+GS +GER  ++G  GEP + +QV
Sbjct:  630 KVWNHESADKLFCEEVDVGEESGPRQIASGLREHYSLEEMQDKLVLVVCNLKAAKIVGFSSNGMVLAAKGEDGK---KVELVEPPQGSKIGERVFIDGLSGEPFSSSQV 735
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A7S1D9R7_CYCTE (Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9R7_CYCTE)

HSP 1 Score: 130 bits (328), Expect = 3.060e-33
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            +VW+H++ ++L+CEEIDVGEG+PR IASGLR+H T E+M G+ VLVVCNLKPA+   F SNGMVLAAK  DGKV    ELV PP+ + VGER  ++G +G P +PAQV
Sbjct:  494 KVWHHQAADNLFCEEIDVGEGDPRQIASGLRQHYTLEDMDGKKVLVVCNLKPARIVGFTSNGMVLAAKL-DGKV----ELVVPPDSAEVGERVAIKGLDGNPFSPAQV 596
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A067CXJ5_SAPPC (tRNA-binding domain-containing protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CXJ5_SAPPC)

HSP 1 Score: 123 bits (308), Expect = 6.970e-33
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            +VW HE+ + LYCEEIDVGEGEPR IASGL +H + E+MQGR++LV+CNLKP     F S+GMVL A + D      V  V PP  + +GER   EG  GEP TPAQV
Sbjct:   72 KVWKHETADKLYCEEIDVGEGEPRLIASGLVKHYSLEQMQGRMLLVMCNLKPRSLVGFKSHGMVLCAVATDADGSERVAFVEPPANAKIGERIHYEGLSGEPWTPAQV 179
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A024UG59_9STRA (Methionine-tRNA ligase, beta subunit n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG59_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.580e-32
Identity = 62/107 (57.94%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:    4 VWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            VW HE+ + LYCEEIDVGE EPR IASGL +H T E+MQGR +LV+CNLKP     F S+GMVL A S +     +V  V PP G+ +GER   EG  GEP TPAQV
Sbjct:   79 VWKHETADKLYCEEIDVGEDEPRQIASGLVKHYTLEQMQGRRLLVMCNLKPRNLVGFKSHGMVLCAVSTNEDGSENVAFVEPPAGAGIGERVMYEGLTGEPWTPAQV 185
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A8J9X9H1_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X9H1_PHATR)

HSP 1 Score: 119 bits (297), Expect = 5.680e-32
Identity = 65/109 (59.63%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    1 QVWNHESKEHLYCEEIDVGEGE-PRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            +VWNHE  + L+CE+ID+GE   PR IASGLR   T EEMQ R+VLVVCNLK  K   F SNGMVLAAKS DG +   VELV PPEG+ +GER  V    G+P +P QV
Sbjct:   10 KVWNHEDADKLFCEQIDLGEDTGPREIASGLRGFYTLEEMQDRMVLVVCNLKGQKMLGFMSNGMVLAAKSEDGAI---VELVAPPEGAQIGERVFVSEMTGDPFSPVQV 115
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A812XFC2_SYMMI (AIMP1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XFC2_SYMMI)

HSP 1 Score: 120 bits (302), Expect = 1.670e-31
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEG 291
            +VWNHE  E L+CEEIDVGE  PR IASGLR+H + E+M  R V+VVCNLK AK   F+SNGMVLAAK ADG+V    +LV PPE +VVGER  +EG
Sbjct:  128 RVWNHEKAERLFCEEIDVGEDVPRQIASGLRDHYSLEDMHNRKVIVVCNLKEAKLVGFSSNGMVLAAKCADGQV----QLVAPPEDAVVGERVFIEG 220
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A835YVV0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.970e-31
Identity = 69/113 (61.06%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:    4 VWNHESKEHLYCEEIDVGEG------EPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            VW+H   E L+CEEI+ G+G       PR +ASGLR H T  EM  RLV VVCNLKPAK A F SNGMVLAA S  GKV    EL+RPP GSVVGER  VEG  G PL P QV
Sbjct:   15 VWHHPDSEKLFCEEIECGDGGDGQGAPPRPVASGLRAHHTLAEMDQRLVCVVCNLKPAKLAGFESNGMVLAA-SGGGKV----ELIRPPAGSVVGERLFVEGLTGAPLNPNQV 122
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BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Match: A0A225VLY1_9STRA (Methionine-tRNA ligase, beta subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLY1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.840e-31
Identity = 65/110 (59.09%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:    1 QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAAFASNGMVLAAKSA--DGKVRPDVELVRPPEGSVVGERARVEGSEGEPLTPAQV 324
            +VW HE+ + LYCEEIDVGE EPR IASGL  H T EEMQ R VLV+CNLKP     F S+GMV+ A     DGK +  V  V PP+G+ VGER   EG  GEPL+PAQV
Sbjct:   69 KVWKHETADKLYCEEIDVGEDEPRQIASGLVHHYTLEEMQDRSVLVLCNLKPRNLVGFRSHGMVMCAAVPLEDGKEK--VAFVTPPQGAKVGERVTFEGLTGEPLSPAQV 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12055.1754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH8_ECTSI5.060e-5894.44Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
B8CA55_THAPS7.270e-3663.30tRNA-binding domain-containing protein (Fragment) ... [more]
A0A1E7FWM2_9STRA2.210e-3363.30Methionine--tRNA ligase n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1D9R7_CYCTE3.060e-3361.11Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis ... [more]
A0A067CXJ5_SAPPC6.970e-3356.48tRNA-binding domain-containing protein (Fragment) ... [more]
A0A024UG59_9STRA4.580e-3257.94Methionine-tRNA ligase, beta subunit n=1 Tax=Aphan... [more]
A0A8J9X9H1_PHATR5.680e-3259.63Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A812XFC2_SYMMI1.670e-3163.92AIMP1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A835YVV0_9STRA1.970e-3161.06tRNA-binding domain-containing protein n=1 Tax=Tri... [more]
A0A225VLY1_9STRA2.840e-3159.09Methionine-tRNA ligase, beta subunit n=1 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12055contigEcto-sp13_S_contig12055:1862..2824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score203.0
Seed ortholog evalue7.1e-50
Seed eggNOG ortholog2880.D8LRH8
Preferred nameMSM1
Model size324
KEGG rclassRC00055,RC00523
KEGG koko:K01874,ko:K15437
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031974,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.methionyl-tRNA aminoacylation
EggNOG OGsCOG0143@1,KOG0436@2759,KOG2241@2759
EC6.1.1.10
Cds size324
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.6290815-CDS-Ecto-sp13_S_contig12055:1861..19541681462640.6290815-CDS-Ecto-sp13_S_contig12055:1861..1954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12055 1862..1954 -
1681462640.6469204-CDS-Ecto-sp13_S_contig12055:2593..28241681462640.6469204-CDS-Ecto-sp13_S_contig12055:2593..2824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12055 2594..2824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12055.1754.1prot_Ecto-sp13_S_contig12055.1754.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12055 1862..2824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12055.1754.1

>prot_Ecto-sp13_S_contig12055.1754.1 ID=prot_Ecto-sp13_S_contig12055.1754.1|Name=mRNA_Ecto-sp13_S_contig12055.1754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
QVWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNL
KPAKFAAFASNGMVLAAKSADGKVRPDVELVRPPEGSVVGERARVEGSEG
EPLTPAQV
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mRNA from alignment at Ecto-sp13_S_contig12055:1862..2824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12055.1754.1 ID=mRNA_Ecto-sp13_S_contig12055.1754.1|Name=mRNA_Ecto-sp13_S_contig12055.1754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12055:1862..2824- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGGAACCACGAGAGTAAAGAGCACCTGTACTGCGAGGAGATCGA
TGTGGGAGAGGGGGAGCCGAGAGCCATCGCTAGCGGTCTGAGAGAACACT
GCACTCCGGAGGAAATGCAGGGAAGGCTGGTGCTGGTCGTGTGCAACTTG
AAACCGGCCAAGTTTGCTGCGTTTGCGTCGAACGGAATGGTGCTTGCGGC
CAAGTCTGCGGACGGGAAGGTGCGCCCTGATGTCTACATTTCTCAGCGAG
CGTAAGGGTTGAACAACCCAATTATATTGTCATTGCTGATATTGGTGCCG
TGAAAGCGGCTGGGGAAACTTTTGGCTGTTGTGATGGCTTGGTGGGGACT
GTTAATGTCATGTTGTTGTCGTGCAAGAACACAATGATGGTAGACACGCT
TTTGGCGGCGCTGTGTGCGTGATTTTTTCCGGAATGTTCATTGTTGCGCG
ATGTTTCTGGTCACTTCTACTTGCGAAACACTGCGTTGTGCTGGAGGTAT
GCCGCGCACGTTGCATGACGTGACGCTGTGAGACACCATTACCGTTGTCC
GTCATCATTTTCATTCGGTGATGATGCGATAACACCCGCATCATCCGCCT
CTTGCCTATGGTACGAAACACCAAACCTGCCTGACCTTCATGAACTCGAC
GCAGGTCCCATCCAGATCTAATTTCGTAGTCAATCACTCCCTCATGCCCA
GTATCTCTTACTGCTACCTATTTGCCGAAGCTTAGATGCTCTGCGGTGCT
TCGTTCTCACCGATTGTGCACGTCCAGCCTGAACAGGACGTGCCACGAAA
TACAACAGATGTGTCTTGATTTTCACGCGATAATTCTCGTTCTTGGATGT
TCTATCTTTCTTGACATCAGGTGGAACTTGTACGACCCCCCGAAGGGTCT
GTGGTAGGAGAGAGGGCTCGAGTCGAGGGATCGGAGGGGGAGCCTTTGAC
GCCAGCACAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12055:1862..2824-

>mRNA_Ecto-sp13_S_contig12055.1754.1 ID=mRNA_Ecto-sp13_S_contig12055.1754.1|Name=mRNA_Ecto-sp13_S_contig12055.1754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12055:1862..2824- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGGAACCACGAGAGTAAAGAGCACCTGTACTGCGAGGAGATCGA
TGTGGGAGAGGGGGAGCCGAGAGCCATCGCTAGCGGTCTGAGAGAACACT
GCACTCCGGAGGAAATGCAGGGAAGGCTGGTGCTGGTCGTGTGCAACTTG
AAACCGGCCAAGTTTGCTGCGTTTGCGTCGAACGGAATGGTGCTTGCGGC
CAAGTCTGCGGACGGGAAGGTGCGCCCTGATGTGGAACTTGTACGACCCC
CCGAAGGGTCTGTGGTAGGAGAGAGGGCTCGAGTCGAGGGATCGGAGGGG
GAGCCTTTGACGCCAGCACAGGTA
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