mRNA_Ecto-sp13_S_contig66668.17540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66668.17540.1
Unique NamemRNA_Ecto-sp13_S_contig66668.17540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A835Z7K5_9STRA (Acetyl-CoA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.990e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            ++LG+HSEMFSDGVLPLV SGV+N S KS D GKLV+TFL+GSQ
Sbjct:  233 KNLGIHSEMFSDGVLPLVESGVVNNSQKSLDRGKLVSTFLVGSQ 276
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A0Q4B4P0_9BACT (4-hydroxybutyrate CoA-transferase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A0Q4B4P0_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 6.900e-13
Identity = 31/44 (70.45%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            ++LG+H+EMF+DGVLPLV  GVINGSMK+ D GK+V+TFL+GSQ
Sbjct:  229 KNLGIHTEMFADGVLPLVEKGVINGSMKATDRGKIVSTFLMGSQ 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A835ZE49_9STRA (Acetyl-CoA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE49_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.440e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    7 LGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            LG+HSEMFSDGVLPLV SGV+N S K+ D GKLV+TFL+GSQ
Sbjct:  239 LGIHSEMFSDGVLPLVDSGVVNNSRKTLDRGKLVSTFLVGSQ 280
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A0K8QV64_9BACT (Acyl-CoA hydrolase n=1 Tax=Bacteroidales bacterium 6E TaxID=1688776 RepID=A0A0K8QV64_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 2.440e-12
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGS 129
            ++LGVHSEMFSDG+LPLV SGV+NG  K+ D GK+VATFL+GS
Sbjct:  245 KNLGVHSEMFSDGILPLVESGVVNGKCKAIDKGKMVATFLMGS 287
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A7X6VYW8_9BACT (4-hydroxybutyrate CoA-transferase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X6VYW8_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 2.550e-12
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            ++LGVHSEMFSDG+LPLV  G++NG  K  D+GK+VATFL+GS+
Sbjct:    4 KNLGVHSEMFSDGILPLVEKGIVNGKNKKLDNGKMVATFLMGSK 47
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A353U1L1_9BACT (4-hydroxybutyrate CoA-transferase (Fragment) n=1 Tax=Marinilabiliaceae bacterium TaxID=2053574 RepID=A0A353U1L1_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.900e-12
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            ++LGVH+EMFSDG+LPLV  GV+NGS K  D GK+VA+FL+GSQ
Sbjct:   83 KNLGVHTEMFSDGILPLVEKGVVNGSQKQIDKGKMVASFLMGSQ 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A2N2WN28_9BACT (4-hydroxybutyrate CoA-transferase n=3 Tax=Bacteroidetes TaxID=976 RepID=A0A2N2WN28_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 3.310e-12
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            ++LG+H+EMF+DGVLPLV SGVING+ K  D GKLVATFL+GSQ
Sbjct:  229 KNLGIHTEMFADGVLPLVNSGVINGANKVLDRGKLVATFLMGSQ 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A644V6W3_9ZZZZ (Butanoate coenzyme A-transferase n=4 Tax=root TaxID=1 RepID=A0A644V6W3_9ZZZZ)

HSP 1 Score: 68.2 bits (165), Expect = 3.310e-12
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            ++LG+H+EMF+DGVLPLV  GVING+ KS D GK+VATFL+GSQ
Sbjct:  229 KNLGIHTEMFADGVLPLVEKGVINGANKSIDKGKMVATFLMGSQ 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A7V4BTT8_9BACT (4-hydroxybutyrate CoA-transferase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V4BTT8_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 3.740e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            ++LG+H+EMF+DGVLPLV  GVING+ K  D GKLVATFL+GSQ
Sbjct:   33 KNLGIHTEMFADGVLPLVEKGVINGANKVTDRGKLVATFLMGSQ 76
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Match: A0A2N2VWY6_9BACT (4-hydroxybutyrate CoA-transferase n=3 Tax=Bacteroidetes TaxID=976 RepID=A0A2N2VWY6_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 4.530e-12
Identity = 31/44 (70.45%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QHLGVHSEMFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQ 132
            ++LG+H+EMF+DGVLPLV SGVING+ K+ D GK+VATFL+GSQ
Sbjct:  229 KNLGIHTEMFADGVLPLVESGVINGADKAIDRGKMVATFLMGSQ 272
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66668.17540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7K5_9STRA1.990e-1375.00Acetyl-CoA hydrolase n=1 Tax=Tribonema minus TaxID... [more]
A0A0Q4B4P0_9BACT6.900e-1370.454-hydroxybutyrate CoA-transferase n=2 Tax=Bacteroi... [more]
A0A835ZE49_9STRA2.440e-1276.19Acetyl-CoA hydrolase n=1 Tax=Tribonema minus TaxID... [more]
A0A0K8QV64_9BACT2.440e-1272.09Acyl-CoA hydrolase n=1 Tax=Bacteroidales bacterium... [more]
A0A7X6VYW8_9BACT2.550e-1265.914-hydroxybutyrate CoA-transferase n=1 Tax=Bacteroi... [more]
A0A353U1L1_9BACT2.900e-1268.184-hydroxybutyrate CoA-transferase (Fragment) n=1 T... [more]
A0A2N2WN28_9BACT3.310e-1272.734-hydroxybutyrate CoA-transferase n=3 Tax=Bacteroi... [more]
A0A644V6W3_9ZZZZ3.310e-1270.45Butanoate coenzyme A-transferase n=4 Tax=root TaxI... [more]
A0A7V4BTT8_9BACT3.740e-1270.454-hydroxybutyrate CoA-transferase n=1 Tax=Bacteroi... [more]
A0A2N2VWY6_9BACT4.530e-1270.454-hydroxybutyrate CoA-transferase n=3 Tax=Bacteroi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66668contigEcto-sp13_S_contig66668:329..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.4416015-CDS-Ecto-sp13_S_contig66668:328..4391681463917.4416015-CDS-Ecto-sp13_S_contig66668:328..439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66668 329..439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.4568903-UTR-Ecto-sp13_S_contig66668:439..4631681463917.4568903-UTR-Ecto-sp13_S_contig66668:439..463Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66668 440..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66668.17540.1prot_Ecto-sp13_S_contig66668.17540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66668 329..439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66668.17540.1

>prot_Ecto-sp13_S_contig66668.17540.1 ID=prot_Ecto-sp13_S_contig66668.17540.1|Name=mRNA_Ecto-sp13_S_contig66668.17540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
MFSDGVLPLVRSGVINGSMKSRDSGKLVATFLIGSQV
back to top

mRNA from alignment at Ecto-sp13_S_contig66668:329..463-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66668.17540.1 ID=mRNA_Ecto-sp13_S_contig66668.17540.1|Name=mRNA_Ecto-sp13_S_contig66668.17540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66668:329..463- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCATTTGGGGGTACATTCGGAGATGTTTTCGGATGGGGTGCTGCCGCT
GGTGAGGTCTGGGGTCATCAACGGCAGCATGAAATCCAGGGATTCAGGGA
AGCTTGTGGCCACGTTTTTGATCGGCTCTCAGGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66668:329..463-

>mRNA_Ecto-sp13_S_contig66668.17540.1 ID=mRNA_Ecto-sp13_S_contig66668.17540.1|Name=mRNA_Ecto-sp13_S_contig66668.17540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66668:329..463- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCGGATGGGGTGCTGCCGCTGGTGAGGTCTGGGGTCATCAACGG
CAGCATGAAATCCAGGGATTCAGGGAAGCTTGTGGCCACGTTTTTGATCG
GCTCTCAGGTT
back to top