mRNA_Ecto-sp13_S_contig6665.17539.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6665.17539.1
Unique NamemRNA_Ecto-sp13_S_contig6665.17539.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: D7FR38_ECTSI (AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR38_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 6.250e-40
Identity = 82/134 (61.19%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTRDMFCDELVLPPGNFRCRPSRLKKTVIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVP+                                                R+K  VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD
Sbjct:  134 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPV----------------------------------------------NPRIK--VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 219          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 7.120e-38
Identity = 82/134 (61.19%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTRDMFCDELVLPPGNFRCRPSRLKKTVIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVP+                                                R+K  VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD
Sbjct:  541 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPV----------------------------------------------NPRIK--VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 626          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: A0A0P1A6K3_PLAHL (Cmgc clk protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6K3_PLAHL)

HSP 1 Score: 97.8 bits (242), Expect = 4.210e-21
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTRDMFCDELVLPPGNFRCRPSRLKKTVIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            ++EF+HSI+L+HTDLKPEN+LL   E+   + +S           +   S       + W    Q+  K RD  C ++     + R   S   K +IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD
Sbjct:  327 SLEFIHSIRLVHTDLKPENILLVDDEEERASCDSSSPSSTSSYGSRNGSSGR-----ENWSNGRQW--KKRDRGCSDVDSDRLSLRPPASNAVK-LIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSD 452          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: A0A662WSC8_9STRA (Protein kinase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSC8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.700e-21
Identity = 59/135 (43.70%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTRDMFCDELVLPPGNFRCRPSRLKKT-VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            ++EF+HSIKLIHTDLKPEN+LL    +  V+ ES               S       + W    Q+  + R M   +    PG    RP       +IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD
Sbjct:  308 SLEFIHSIKLIHTDLKPENILLVDDTEERVSCESSSPSSSSSYGSPNGSSGR-----EQWSNGRQWKKRGRGMSDADT---PGRLSLRPPANNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSD 434          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: A0A8K1FGF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGF8_PYTOL)

HSP 1 Score: 97.1 bits (240), Expect = 8.240e-21
Identity = 60/138 (43.48%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTRDMFCDELVLPPGN---FRCRPSRLKKT-VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            A+EF+HSIKLIHTDLKPEN+LL   +D  V   S             +CSS       W            D    ++ +  G+     CRP       +IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD
Sbjct:  417 ALEFIHSIKLIHTDLKPENILLV--DDEEVRTASSSPSST------SSCSSPNGNHSQW--------SNGHDTRVQDVTMAEGDTGRLTCRPPASNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSD 538          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: M4C289_HYAAE (Protein kinase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C289_HYAAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.490e-20
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTRDMFCDEL----VLPPGNFRCRPSRLKKTVIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            ++EF+HSI+LIHTDLKPEN+LL   E+  ++ +S           ++  S       + W    Q+  + RD+   +     + PP N   +       +IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD
Sbjct:  312 SLEFIHSIRLIHTDLKPENILLVDDEEERLSCDSSSPSSTSSFDSREGSSGR-----ERWSNGRQWKKRERDVSDADTGRPSLRPPANNAVK-------LIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSD 437          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: A0A329S7G9_9STRA (Protein kinase domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329S7G9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.720e-20
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTR---DMFCDELVLPPGNFRCRPSRLKKTVIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            ++EF+HSI+LIHTDLKPEN+LL   E+  ++ +S               S       + W    Q+  + R   D     L L P      P+     +IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD
Sbjct:  291 SLEFIHSIRLIHTDLKPENILLVDDEEERLSCDSSSPSSTSSFGSPDGSSGR-----EQWSNGRQWKKRERAMSDADAGRLSLRP------PANNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSD 416          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: A0A3M6VG08_9STRA (Pyridoxal kinase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VG08_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.670e-20
Identity = 58/135 (42.96%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTRDMFCDELVLPPGNFRCRPSRLKKT-VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            ++EF+HSI+LIHTDLKPEN+LL   E+  ++ +S         F     SS      + W    Q+  K R+    ++    G    RP       +IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD
Sbjct:  566 SLEFIHSIRLIHTDLKPENILLVDDEEERLSCDSSSPSSTSS-FGSPGGSSGR----EQWSNGRQW--KKRERAISDV--DTGRLSLRPPASNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSD 691          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: A0A2P4Y3X6_9STRA (CMGC/CLK protein kinase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3X6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.010e-20
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTR---DMFCDELVLPPGNFRCRPSRLKKTVIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            ++EF+HSI+LIHTDLKPEN+LL   E+  +  +S               S       + W    Q+  + R   D+    L L P      P+     +IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD
Sbjct:  125 SLEFIHSIRLIHTDLKPENILLVDDEEERLLCDSSSPSSTSSYGSPDGSSGR-----EQWSNGRQWKKRGRGMSDVDSGRLSLRP------PANNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSD 250          
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Match: G4YGK5_PHYSP (Protein kinase domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4YGK5_PHYSP)

HSP 1 Score: 94.0 bits (232), Expect = 9.510e-20
Identity = 58/137 (42.34%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    1 AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACSSVLYCCCDWWPPLLQYCFKTRDMF---CDELVLPPGNFRCRPSRLKKTVIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD 402
            ++EF+HSI+LIHTDLKPEN+LL   E+  ++ +S             + SS      + W    Q+    R M       L L P      P+     +IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD
Sbjct:  325 SLEFIHSIRLIHTDLKPENILLVDDEEERLSCDSSS---------PSSTSSYGSSGREQWSNGRQWKKGERGMSDADSGRLALRP------PANNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSD 446          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6665.17539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR38_ECTSI6.250e-4061.19AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinas... [more]
A0A6H5L2A1_9PHAE7.120e-3861.19Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A0P1A6K3_PLAHL4.210e-2142.54Cmgc clk protein kinase n=1 Tax=Plasmopara halsted... [more]
A0A662WSC8_9STRA7.700e-2143.70Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A8K1FGF8_PYTOL8.240e-2143.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4C289_HYAAE1.490e-2040.58Protein kinase domain-containing protein n=1 Tax=H... [more]
A0A329S7G9_9STRA6.720e-2041.61Protein kinase domain-containing protein n=11 Tax=... [more]
A0A3M6VG08_9STRA7.670e-2042.96Pyridoxal kinase n=1 Tax=Peronospora effusa TaxID=... [more]
A0A2P4Y3X6_9STRA9.010e-2041.61CMGC/CLK protein kinase (Fragment) n=1 Tax=Phytoph... [more]
G4YGK5_PHYSP9.510e-2042.34Protein kinase domain-containing protein n=6 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6665contigEcto-sp13_S_contig6665:7409..8073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score97.8
Seed ortholog evalue4e-18
Seed eggNOG ortholog272952.HpaP813204
Model size402
KEGG koko:K00924,ko:K08287,ko:K08823
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031974,GO:0031981,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045111,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs3Q7K6@4776,KOG0667@1,KOG0671@2759
EC2.7.12.1
Cds size402
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.3883462-CDS-Ecto-sp13_S_contig6665:7408..75311681463917.3883462-CDS-Ecto-sp13_S_contig6665:7408..7531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6665 7409..7531 +
1681463917.4028816-CDS-Ecto-sp13_S_contig6665:7794..80731681463917.4028816-CDS-Ecto-sp13_S_contig6665:7794..8073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6665 7795..8073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6665.17539.1prot_Ecto-sp13_S_contig6665.17539.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6665 7409..8073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6665.17539.1

>prot_Ecto-sp13_S_contig6665.17539.1 ID=prot_Ecto-sp13_S_contig6665.17539.1|Name=mRNA_Ecto-sp13_S_contig6665.17539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
AVEFLHSIKLIHTDLKPENVLLKSWEDRSVTLESGDVIRVPILFWQKACS
SVLYCCCDWWPPLLQYCFKTRDMFCDELVLPPGNFRCRPSRLKKTVIDFG
GATYEHDSHASVVNTRQYRAPEVILGLRWLYPSD
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mRNA from alignment at Ecto-sp13_S_contig6665:7409..8073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6665.17539.1 ID=mRNA_Ecto-sp13_S_contig6665.17539.1|Name=mRNA_Ecto-sp13_S_contig6665.17539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=665bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6665:7409..8073+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGGAGTTCCTGCACTCCATCAAGCTCATCCATACCGACCTGAAGCC AGAGAACGTCTTGCTCAAGTCCTGGGAGGACAGAAGTGTCACGCTCGAGT CCGGTGACGTCATCAGGGTTCCTGTGAATCCGCGCATCAAGGGTGAGGGG TGATGTTGATCTGGTCGTTGTTGGTTGTGTTCAGGTGAAGGAGCCATTCT GACGGTCTACTTGTACCGGAATAAAAACCATTTTACTCTCTCTCCCTCTA ACATAGTCTGTGTGCTATATTGCCCAACTCAACCCAACCCAGACGGGTAC AATTAGTCAAAGGGGGGTATGTGCTTCACGTGTAACCCAAATTAAAATTA TAGGGACGTATGTAGTATAGTTAACATTGTATCCAGATTTTGTTTTGGCA AAAAGCATGTTCTTCTGTCCTTTATTGTTGCTGTGACTGGTGGCCTCCGC TCCTACAATATTGCTTCAAAACCCGCGATATGTTTTGTGACGAACTCGTG CTTCCTCCCGGGAACTTTCGTTGTCGCCCTTCCCGGCTAAAAAAAACAGT GATCGACTTCGGAGGGGCGACGTACGAACACGACTCGCACGCGTCCGTAG TCAACACCCGGCAGTACCGGGCACCCGAGGTGATCTTGGGGCTGCGCTGG CTCTACCCGTCAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6665:7409..8073+

>mRNA_Ecto-sp13_S_contig6665.17539.1 ID=mRNA_Ecto-sp13_S_contig6665.17539.1|Name=mRNA_Ecto-sp13_S_contig6665.17539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6665:7409..8073+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGGAGTTCCTGCACTCCATCAAGCTCATCCATACCGACCTGAAGCC
AGAGAACGTCTTGCTCAAGTCCTGGGAGGACAGAAGTGTCACGCTCGAGT
CCGGTGACGTCATCAGGGTTCCTATTTTGTTTTGGCAAAAAGCATGTTCT
TCTGTCCTTTATTGTTGCTGTGACTGGTGGCCTCCGCTCCTACAATATTG
CTTCAAAACCCGCGATATGTTTTGTGACGAACTCGTGCTTCCTCCCGGGA
ACTTTCGTTGTCGCCCTTCCCGGCTAAAAAAAACAGTGATCGACTTCGGA
GGGGCGACGTACGAACACGACTCGCACGCGTCCGTAGTCAACACCCGGCA
GTACCGGGCACCCGAGGTGATCTTGGGGCTGCGCTGGCTCTACCCGTCAG
AC
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