mRNA_Ecto-sp13_S_contig66645.17537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66645.17537.1
Unique NamemRNA_Ecto-sp13_S_contig66645.17537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66645.17537.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 9.180e-40
Identity = 158/216 (73.15%), Postives = 162/216 (75.00%), Query Frame = -3 
Query:   19 DGRASGYADPVVLRFNDGVKGGDGXXXXXXXXXXXXXXXXXXXSNQSQSSGNTYGPLTAGMGEETSS-NKFPAIRYADDGVADSPTMAEEMFLRRLGGGXXXXXXXXXXXXXXXXXXXXXXXTTGSAMMYSAXXXXXXXXXXXXXXXXXXX-RSPSGIGDATAAATSAAVFSGIDEHGGEEAGRGGGG-----------RSLRLSPAEPMANAFPA 627
            DGRASGYADPVVLRFNDG+KGGDGXXXXXXXXXXXXXXXXXX SNQSQSSGNTYGPLTAGMGEETSS NKF AI YADDGVADSPTMAEEMF RRLGGG    XXXXXXXXXXXXX      TTGSAMMY+  XXXXXXXXXXXXXXXXX  R+P+GIGDATA A                                  RSLRLSPAEPMANAFPA
Sbjct: 2026 DGRASGYADPVVLRFNDGMKGGDGXXXXXXXXXXXXXXXXXX-SNQSQSSGNTYGPLTAGMGEETSSSNKFSAINYADDGVADSPTMAEEMFSRRLGGGGRQPXXXXXXXXXXXXXLT----TTGSAMMYATTXXXXXXXXXXXXXXXXXDGRAPNGIGDATAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLSPAEPMANAFPA 2236
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BLAST of mRNA_Ecto-sp13_S_contig66645.17537.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.240e-16
Identity = 93/203 (45.81%), Postives = 95/203 (46.80%), Query Frame = -3 
Query:   19 DGRASGYADPVVLRFNDGVKGGDGXXXXXXXXXXXXXXXXXXXSNQSQSSGNTYGPLTAGMGEETSSNKFPAIRYADDGVADSPTMAEEMFLRRLGGGXXXXXXXXXXXXXXXXXXXXXXXTTGSAMMYSAXXXXXXXXXXXXXXXXXXXRSPSGIGDATAAATSAAVFSGIDEHGGEEAGRGGGGRSLRLSPAEPMANAFPA 627
            DGRASGYADPVVLRFNDG+ GGD  XXXXXXXXXXXXXXXXXX  QSQSSGNTYGPLTA M                   ADS TMAE+MF RRLGGG                                                    R PSG GDA                           RSLRLSPAEPMANAFPA
Sbjct: 1731 DGRASGYADPVVLRFNDGMNGGDRGXXXXXXXXXXXXXXXXXXXXQSQSSGNTYGPLTASM-------------------ADSSTMAEDMFARRLGGGDG--------------------------------------------------RPPSGTGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLSPAEPMANAFPA 1864
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66645.17537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU65_9PHAE9.180e-4073.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF9_ECTSI1.240e-1645.81Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66645contigEcto-sp13_S_contig66645:38..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size629
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.2955024-UTR-Ecto-sp13_S_contig66645:37..501681463917.2955024-UTR-Ecto-sp13_S_contig66645:37..50Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66645 38..50 +
1681463917.3147907-UTR-Ecto-sp13_S_contig66645:443..6661681463917.3147907-UTR-Ecto-sp13_S_contig66645:443..666Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66645 444..666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.305682-CDS-Ecto-sp13_S_contig66645:50..4431681463917.305682-CDS-Ecto-sp13_S_contig66645:50..443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66645 51..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66645.17537.1prot_Ecto-sp13_S_contig66645.17537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66645 51..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66645.17537.1

>prot_Ecto-sp13_S_contig66645.17537.1 ID=prot_Ecto-sp13_S_contig66645.17537.1|Name=mRNA_Ecto-sp13_S_contig66645.17537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MGAGNAFAMGSAGLSLSDLPPPPLPASSPPCSSMPENTAADVAAAVASPI
PLGERPAPPPSRLANMSSAIVDESAEYIIALPVVVVGCCCGCRCCGCGCG
CGCGWPPPPPRRRKNISSAMVGESATPSSA*
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mRNA from alignment at Ecto-sp13_S_contig66645:38..666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66645.17537.1 ID=mRNA_Ecto-sp13_S_contig66645.17537.1|Name=mRNA_Ecto-sp13_S_contig66645.17537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=629bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66645:38..666+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGGCGTTCGTCATGGGCGCCGGGAACGCGTTCGCCATGGGCTCCGCGG
GGCTGAGCCTTAGCGATCTCCCTCCTCCTCCTCTTCCGGCTTCCTCACCC
CCGTGCTCGTCGATGCCCGAAAACACCGCCGCCGACGTTGCCGCCGCCGT
GGCATCGCCGATTCCGCTTGGCGAACGGCCAGCGCCACCGCCGAGCCGCC
TCGCGAACATGTCTTCGGCCATTGTCGACGAGTCTGCTGAGTACATCATC
GCGCTCCCGGTCGTCGTCGTCGGCTGTTGTTGCGGCTGCCGCTGCTGCGG
CTGCGGCTGCGGCTGCGGCTGCGGCTGGCCGCCGCCACCACCTAGGCGTC
GCAAAAACATTTCCTCGGCCATGGTAGGAGAGTCGGCGACGCCGTCGTCG
GCGTAGCGTATCGCCGGGAACTTGTTGCTGCTCGTCTCTTCCCCCATGCC
GGCGGTGAGCGGGCCGTACGTGTTGCCGCTGCTCTGGCTCTGGTTGCTCG
CGGAGGACTGAACAGCGGCCGTAGCCCCCCCGCCTCCGCCTCCTCCTCCT
CCGCCTCCATCGCCACCTTTCACGCCGTCGTTGAACCGAAGCACTACCGG
GTCGGCGTACCCCGAGGCGCGCCCATCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66645:38..666+

>mRNA_Ecto-sp13_S_contig66645.17537.1 ID=mRNA_Ecto-sp13_S_contig66645.17537.1|Name=mRNA_Ecto-sp13_S_contig66645.17537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66645:38..666+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGCCGGGAACGCGTTCGCCATGGGCTCCGCGGGGCTGAGCCTTAG
CGATCTCCCTCCTCCTCCTCTTCCGGCTTCCTCACCCCCGTGCTCGTCGA
TGCCCGAAAACACCGCCGCCGACGTTGCCGCCGCCGTGGCATCGCCGATT
CCGCTTGGCGAACGGCCAGCGCCACCGCCGAGCCGCCTCGCGAACATGTC
TTCGGCCATTGTCGACGAGTCTGCTGAGTACATCATCGCGCTCCCGGTCG
TCGTCGTCGGCTGTTGTTGCGGCTGCCGCTGCTGCGGCTGCGGCTGCGGC
TGCGGCTGCGGCTGGCCGCCGCCACCACCTAGGCGTCGCAAAAACATTTC
CTCGGCCATGGTAGGAGAGTCGGCGACGCCGTCGTCGGCGTAG
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