mRNA_Ecto-sp13_S_contig66580.17529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66580.17529.1
Unique NamemRNA_Ecto-sp13_S_contig66580.17529.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: A0A6H5KCP0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 7.840e-30
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:   19 PSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            PS NTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATAT+EV
Sbjct:   14 PSANTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATEEV 71
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BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.880e-27
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    7 TPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            T  L     RGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATAT+EV
Sbjct:  172 TTALAGLAKRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATEEV 233
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BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: A0A0S7GWJ5_9TELE (RECQ5 (Fragment) n=3 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GWJ5_9TELE)

HSP 1 Score: 89.7 bits (221), Expect = 1.190e-20
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            S+ PCL    +RGL+S LAVDEAHCVS WGHDFRP YL+LG  R + + GVPCLALTATA K V
Sbjct:  126 SFQPCLTDLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRAR-IPGVPCLALTATAPKNV 188
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BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: A0A8C2X0B7_CYCLU (ATP-dependent DNA helicase n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2X0B7_CYCLU)

HSP 1 Score: 92.4 bits (228), Expect = 2.270e-20
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            S+ PCL    +RGL+S LAVDEAHCVS WGHDFRP YL+LG  R + L GVPCLALTATATK V
Sbjct:  123 SFQPCLTGLVSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGKLRGR-LPGVPCLALTATATKNV 185
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BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: A0A0F8BC02_LARCR (ATP-dependent DNA helicase n=5 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8BC02_LARCR)

HSP 1 Score: 92.4 bits (228), Expect = 2.270e-20
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            S+ PCL    TRGL+S LAVDEAHCVS WGHDFRP YL+LG  R + L GVPCLALTATA K V
Sbjct:  126 SFQPCLTDLCTRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGGLRTR-LPGVPCLALTATAPKNV 188
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BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: UPI001176FD2D (ATP-dependent DNA helicase Q5 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=UPI001176FD2D)

HSP 1 Score: 92.4 bits (228), Expect = 2.270e-20
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            S+ PCL   ++RGL+S LAVDEAHCVS WGHDFRP YL+LG  R + L GVPCLALTATA K V
Sbjct:  126 SFQPCLTDLSSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRSR-LPGVPCLALTATAPKNV 188
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: A0A6P7IR09_9TELE (ATP-dependent DNA helicase n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7IR09_9TELE)

HSP 1 Score: 92.0 bits (227), Expect = 3.100e-20
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            S+ PCL S  +RGL+S LAVDEAHCVS WGHDFRP YL+LG  R + L+GVPCLALTATA K V
Sbjct:  126 SFQPCLTSLFSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGDLRGR-LQGVPCLALTATAPKNV 188
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BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: A0A3B4AUX0_9GOBI (ATP-dependent DNA helicase n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4AUX0_9GOBI)

HSP 1 Score: 91.7 bits (226), Expect = 4.220e-20
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            S+ PCL    +RGL+S LAVDEAHCVS WGHDFRP YL+LG  R K L GVPCLALTATA K V
Sbjct:  126 SFQPCLSGLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRAK-LPGVPCLALTATAPKNV 188
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: A0A8C6TN70_9GOBI (ATP-dependent DNA helicase n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6TN70_9GOBI)

HSP 1 Score: 91.7 bits (226), Expect = 4.230e-20
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            S+ PCL    +RGL+S LAVDEAHCVS WGHDFRP YL+LG  R K L GVPCLALTATA K V
Sbjct:  134 SFQPCLSGLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGLLRPK-LPGVPCLALTATAPKNV 196
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Match: A0A4W4GHK3_ELEEL (ATP-dependent DNA helicase n=5 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4GHK3_ELEEL)

HSP 1 Score: 91.7 bits (226), Expect = 4.230e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATKEV 192
            S+ PCL S  +RGL++LLAVDEAHCVS WGHDFRP YL+LG  R + L GVPC+ALTATA K V
Sbjct:  125 SFQPCLNSICSRGLLALLAVDEAHCVSQWGHDFRPDYLKLGELRSR-LPGVPCVALTATAPKRV 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66580.17529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCP0_9PHAE7.840e-3096.55ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7FXK3_ECTSI2.880e-2787.10ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A0S7GWJ5_9TELE1.190e-2067.19RECQ5 (Fragment) n=3 Tax=Poeciliopsis prolifica Ta... [more]
A0A8C2X0B7_CYCLU2.270e-2070.31ATP-dependent DNA helicase n=2 Tax=Cyclopterus lum... [more]
A0A0F8BC02_LARCR2.270e-2070.31ATP-dependent DNA helicase n=5 Tax=Larimichthys cr... [more]
UPI001176FD2D2.270e-2068.75ATP-dependent DNA helicase Q5 n=1 Tax=Salarias fas... [more]
A0A6P7IR09_9TELE3.100e-2070.31ATP-dependent DNA helicase n=1 Tax=Parambassis ran... [more]
A0A3B4AUX0_9GOBI4.220e-2070.31ATP-dependent DNA helicase n=2 Tax=Periophthalmus ... [more]
A0A8C6TN70_9GOBI4.230e-2070.31ATP-dependent DNA helicase n=1 Tax=Neogobius melan... [more]
A0A4W4GHK3_ELEEL4.230e-2068.75ATP-dependent DNA helicase n=5 Tax=Electrophorus e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66580contigEcto-sp13_S_contig66580:140..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score113.2
Seed ortholog evalue4.4e-23
Seed eggNOG ortholog2880.D7FXK3
Model size192
KEGG koko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-28_002030.1
EC3.6.4.12
Cds size192
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463916.4356942-CDS-Ecto-sp13_S_contig66580:139..3311681463916.4356942-CDS-Ecto-sp13_S_contig66580:139..331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66580 140..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66580.17529.1prot_Ecto-sp13_S_contig66580.17529.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66580 140..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66580.17529.1

>prot_Ecto-sp13_S_contig66580.17529.1 ID=prot_Ecto-sp13_S_contig66580.17529.1|Name=mRNA_Ecto-sp13_S_contig66580.17529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
SYTPCLPSTNTRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKG
VPCLALTATATKEV
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mRNA from alignment at Ecto-sp13_S_contig66580:140..331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66580.17529.1 ID=mRNA_Ecto-sp13_S_contig66580.17529.1|Name=mRNA_Ecto-sp13_S_contig66580.17529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66580:140..331+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTACACGCCTTGCCTCCCCTCGACCAATACCAGGGGGTTGATCAGCCT
CCTCGCGGTGGACGAGGCCCACTGCGTCAGCACCTGGGGGCACGACTTCC
GGCCGGCCTACCTCGAGCTCGGCGCGTTTCGCAAGAAGCACCTCAAGGGG
GTGCCCTGCCTCGCCCTCACCGCAACCGCCACGAAAGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66580:140..331+

>mRNA_Ecto-sp13_S_contig66580.17529.1 ID=mRNA_Ecto-sp13_S_contig66580.17529.1|Name=mRNA_Ecto-sp13_S_contig66580.17529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66580:140..331+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTACACGCCTTGCCTCCCCTCGACCAATACCAGGGGGTTGATCAGCCT
CCTCGCGGTGGACGAGGCCCACTGCGTCAGCACCTGGGGGCACGACTTCC
GGCCGGCCTACCTCGAGCTCGGCGCGTTTCGCAAGAAGCACCTCAAGGGG
GTGCCCTGCCTCGCCCTCACCGCAACCGCCACGAAAGAGGTA
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