mRNA_Ecto-sp13_S_contig6658.17528.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6658.17528.1
Unique NamemRNA_Ecto-sp13_S_contig6658.17528.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6658.17528.1 vs. uniprot
Match: A0A6H5LB44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB44_9PHAE)

HSP 1 Score: 570 bits (1469), Expect = 5.530e-188
Identity = 543/794 (68.39%), Postives = 565/794 (71.16%), Query Frame = 1
Query:    1 MSLKAKGARGKHGXXXXXXXXXXXEGKKDSSAKRCKKCTALLPMMYKMKDKLAELHPQCNQYKLELDALRAENQELR--RQLAMPPSARTPPGRTAPPTWSTNSSVSPVRQRALGSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSRPDAVSEKRKTPAPSSGGTQGTGLTASLGLGRGTADSXXXXXXXXXVSSPAGST--AAMTAPARKDRSKGEKVRDWTAAVARRKRETXXXXXXXXXXXXXXXXXXXXXXXXXCGSGRTGNVGGRWGGLEKGGEDSVEXXXXXXXXXXXXXXXXXXXXTALEKPSXXXXXXXXXXXXXXXXXXXXXXXXXXXVQPTGVFAAAAFSFLDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPVPQTSSMLARGFRPGGESATSNEDGVEKEGGSEGDFDDGWEEGEGQQEEEEVEWYEDTLGDMGRLGWSQVWRRGDATAAXXXXXXXXXXGDGLDKGSRALARKCRKLLLADTAGSSPSLESGDEILGPKGLSALLRLELTGAVSMEGVLVSALMGRSLKRDHGFLGRLALQLLSGIDAAHASPPSHPEVLSLVVEELEGLAEIVAAPSTTAHLRGYGWARETRLALELLSETLLDWMDENQAKRSSGVGEAENGDEEDDDPGGYSSMSFGNSKXXXXXXXXXXXXXXXXXAGSLTGKGGVGEEGGGDAWRAEAEATVLWWWETDEEARIPWAVARLLGLLLRRLDQPQR 2370
            MS KAK ARGKHGXXXXXXXXXXX       AKRCKKCTALLPMMYKMKDKLAELHPQCNQYK   + +    + +   R+   P SAR  P       W+ N ++  V +      A                                        V +R + VS+KRK  APSSG      LTASLGLG   A S   XXXXXX          AA+TAPARKDRSKGEKVRDWTAAVAR+KRE                  XXXXXXXX               LEKG      XXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXX        VQPTGVFAAAAFSFLDE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     SGPVPQTSSMLARGFRPGGESA SNEDGVE+EGG EGDFDDGWEEGEGQQEEEEVEWYEDT GDMGRLGWSQ                                  CRKLLLADTAGS+PSLESGDEILGPKGLSALLRLELTGAVSMEGVLVSAL GRSLKRDHGFLGRLALQLLSGIDAAHASP S PEVLSLVVEELEGLAEI+AAPSTTA LRGYGWARETRLALELLSETLL WMDE+QAKR SGVG+ ENGD+E+DDPGGYSSMSFGNSK XXXXXXXXXXXXXXXX       GGVGEE GGDAWRAEAEATVLWWWETDEEAR+PWAVARLLGLLLRRLDQ QR
Sbjct:    1 MSSKAKRARGKHGXXXXXXXXXXXXXX-XXXAKRCKKCTALLPMMYKMKDKLAELHPQCNQYKGCCEDIPTLVKVIAQSREPGAPASARDAP-LCKNAAWA-NRTLHGVDEFVCACRAGAPSKKGSKGAAV---------------------------VAARSEVVSDKRKALAPSSGXXXXAALTASLGLGSDAAGSGSGXXXXXXXXXXXXXXXXAAVTAPARKDRSKGEKVRDWTAAVARQKRERGGRGDVDENGKGAAGRGXXXXXXXXXXXXXXXXXXXXXXXLEKG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAEAPAVVQPTGVFAAAAFSFLDEGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----SGPVPQTSSMLARGFRPGGESAASNEDGVEEEGGGEGDFDDGWEEGEGQQEEEEVEWYEDTPGDMGRLGWSQ----------------------------------CRKLLLADTAGSAPSLESGDEILGPKGLSALLRLELTGAVSMEGVLVSALRGRSLKRDHGFLGRLALQLLSGIDAAHASPLSDPEVLSLVVEELEGLAEILAAPSTTAQLRGYGWARETRLALELLSETLLGWMDEHQAKRYSGVGDTENGDDENDDPGGYSSMSFGNSKKXXXXXXXXXXXXXXXXXXXXXXXGGVGEEEGGDAWRAEAEATVLWWWETDEEARVPWAVARLLGLLLRRLDQLQR 723          
BLAST of mRNA_Ecto-sp13_S_contig6658.17528.1 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI)

HSP 1 Score: 503 bits (1294), Expect = 4.580e-160
Identity = 300/343 (87.46%), Postives = 306/343 (89.21%), Query Frame = 1
Query: 1342 MLARGFRPGGESATSNEDGVEKEGGSEGDFDDGWEEGEGQQEEEEVEWYEDTLGDMGRLGWSQVWRRGDATAAXXXXXXXXXXGDGLDKGSRALARKCRKLLLADTAGSSPSLESGDEILGPKGLSALLRLELTGAVSMEGVLVSALMGRSLKRDHGFLGRLALQLLSGIDAAHASPPSHPEVLSLVVEELEGLAEIVAAPSTTAHLRGYGWARETRLALELLSETLLDWMDENQAKRSSGVGEAENGDEEDDDPGGYSSMSFGNSKXXXXXXXXXXXXXXXXXAGSLTGKGGVGEEGGGDAWRAEAEATVLWWWETDEEARIPWAVARLLGLLLRRLDQPQR 2370
            MLARGFRPGGESA SNEDGVE E G EGDFDDGWEEGEGQQEEEEVEWYEDT GDMGRLGWSQVWRRGD TAA XXXXXXXXX  GLDKGSR LARKCRKLLLADTAGS+PS ESGDEILGPKGLSALLRLELTGAVSMEGVLVSAL GRSLKRDHGFLGRLALQLLSGIDAAHASP S PEVLSLVVEELEGLAEI+AAPSTT  LR +GWARETRLALELLSETLLDWMDENQAKRSSGVG+A NGDEE+DDPGGYSSMSFG   XXXXXXXXXXXXXXXXX                DAWRAEAEATVLWWWETDEEAR+PWAVARLLGLLLRRLDQPQR
Sbjct:    1 MLARGFRPGGESAASNEDGVEGEVGGEGDFDDGWEEGEGQQEEEEVEWYEDTPGDMGRLGWSQVWRRGDVTAAAXXXXXXXXXXXGLDKGSRVLARKCRKLLLADTAGSAPSSESGDEILGPKGLSALLRLELTGAVSMEGVLVSALRGRSLKRDHGFLGRLALQLLSGIDAAHASPLSDPEVLSLVVEELEGLAEILAAPSTTEQLRVFGWARETRLALELLSETLLDWMDENQAKRSSGVGDAVNGDEENDDPGGYSSMSFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAWRAEAEATVLWWWETDEEARVPWAVARLLGLLLRRLDQPQR 343          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6658.17528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LB44_9PHAE5.530e-18868.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCR1_ECTSI4.580e-16087.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6658contigEcto-sp13_S_contig6658:2923..8077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2370
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionGlycosyl transferase, family 25
Ec32 orthologEc-03_001930.1
Cds size2370
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6658.17528.1prot_Ecto-sp13_S_contig6658.17528.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6658 2923..8077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463916.3319447-CDS-Ecto-sp13_S_contig6658:2922..31111681463916.3319447-CDS-Ecto-sp13_S_contig6658:2922..3111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6658 2923..3111 +
1681463916.350742-CDS-Ecto-sp13_S_contig6658:3520..49631681463916.350742-CDS-Ecto-sp13_S_contig6658:3520..4963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6658 3521..4963 +
1681463916.3617682-CDS-Ecto-sp13_S_contig6658:5118..52351681463916.3617682-CDS-Ecto-sp13_S_contig6658:5118..5235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6658 5119..5235 +
1681463916.3715267-CDS-Ecto-sp13_S_contig6658:5901..60691681463916.3715267-CDS-Ecto-sp13_S_contig6658:5901..6069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6658 5902..6069 +
1681463916.3844147-CDS-Ecto-sp13_S_contig6658:6581..67891681463916.3844147-CDS-Ecto-sp13_S_contig6658:6581..6789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6658 6582..6789 +
1681463916.3953626-CDS-Ecto-sp13_S_contig6658:7504..77271681463916.3953626-CDS-Ecto-sp13_S_contig6658:7504..7727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6658 7505..7727 +
1681463916.4044435-CDS-Ecto-sp13_S_contig6658:8055..80771681463916.4044435-CDS-Ecto-sp13_S_contig6658:8055..8077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6658 8056..8077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6658.17528.1

>prot_Ecto-sp13_S_contig6658.17528.1 ID=prot_Ecto-sp13_S_contig6658.17528.1|Name=mRNA_Ecto-sp13_S_contig6658.17528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=790bp
MSLKAKGARGKHGGGGGGGGGGKSEGKKDSSAKRCKKCTALLPMMYKMKD
KLAELHPQCNQYKLELDALRAENQELRRQLAMPPSARTPPGRTAPPTWST
NSSVSPVRQRALGSSATTTTAARGGGGGGGGGGGGGRAATAAAGAPSKKG
SNGAAVVVSRPDAVSEKRKTPAPSSGGTQGTGLTASLGLGRGTADSGGGN
GGGGGVSSPAGSTAAMTAPARKDRSKGEKVRDWTAAVARRKRETGGGGDV
DENGKGAAGGGGGGGGSGGCGSGRTGNVGGRWGGLEKGGEDSVEEKEDEE
EEDKAEEAAEESGETALEKPSSSSGGGDRKKSKGKKKKRGEAAGAPAAVQ
PTGVFAAAAFSFLDEGSKEKGGGETTSSDDDDDDDDDDDDDSTSNDSDGS
TNGRRQNQPRKRARTANGGAAAAAAGGGGSGDGGRRRRSGPVPQTSSMLA
RGFRPGGESATSNEDGVEKEGGSEGDFDDGWEEGEGQQEEEEVEWYEDTL
GDMGRLGWSQVWRRGDATAAAAGGGEGDDDGDGLDKGSRALARKCRKLLL
ADTAGSSPSLESGDEILGPKGLSALLRLELTGAVSMEGVLVSALMGRSLK
RDHGFLGRLALQLLSGIDAAHASPPSHPEVLSLVVEELEGLAEIVAAPST
TAHLRGYGWARETRLALELLSETLLDWMDENQAKRSSGVGEAENGDEEDD
DPGGYSSMSFGNSKKKKKKKAKDKGFGAGASAGSLTGKGGVGEEGGGDAW
RAEAEATVLWWWETDEEARIPWAVARLLGLLLRRLDQPQR
back to top

mRNA from alignment at Ecto-sp13_S_contig6658:2923..8077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6658.17528.1 ID=mRNA_Ecto-sp13_S_contig6658.17528.1|Name=mRNA_Ecto-sp13_S_contig6658.17528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6658:2923..8077+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTCAAGGCCAAGGGGGCACGAGGAAAGCATGGCGGGGGTGGCGG CGGCGGCGGCGGCGGCAAATCGGAAGGGAAAAAGGACAGCAGCGCCAAGC GCTGCAAGAAGTGCACCGCACTACTCCCAATGATGTACAAGATGAAGGAC AAGCTCGCGGAGCTTCACCCGCAGTGCAACCAGTACAAAGTGAGTGTCCT GGCCGCAAAAGGAACCGCGGAATTAGTACCGGCCGTATGTTGGGTGTCCG TGTTTGCGGCCGCATGAGGCCAAGCGAGTTGCTTGCAACGTTCAGTCGCA GATGCTGCAATGACATCCCTACCCCAGTGAAAGTTATTGCACAGGTCCTA GGTGGGCCATAAGGCAGATCGCCGGGACCCACACTTTCCCTTGCCCTATG TCCTTGTGCTGGTCTCGTCTTCATCGACGCCCCCTCCTCCCGAACAAACA CCGACGCACAATCCGGAGCCGCCATCGGCTGGTCGCTGTCCCTCTCATCG CCTCTACGTACGGAACGATACGTGGGTATGACCTTGCCGGTACGCCTCTC ATCGGCCGCGGTTGCCCATGTTCGTTTTTTGGCGATGATTCGCTGCAGCT GGAGCTCGACGCTCTCAGAGCCGAGAACCAGGAGCTCCGGCGTCAGCTCG CGATGCCCCCCTCTGCAAGAACGCCGCCTGGGCGAACCGCACCCCCCACG TGGTCCACGAATTCGTCGGTGTCTCCGGTAAGACAGCGGGCTCTGGGCTC GTCTGCTACCACGACAACAGCAGCAAGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAAGAGCAGCAACAGCAGCAGCAGGGGCACCGTCA AAGAAGGGAAGCAACGGTGCCGCTGTCGTCGTCTCTCGTCCGGACGCCGT CAGCGAAAAGAGGAAGACGCCAGCACCGTCTTCGGGTGGAACTCAAGGTA CGGGCCTCACCGCCAGTCTCGGCCTCGGCAGGGGCACCGCAGACAGCGGC GGCGGGAACGGCGGCGGGGGCGGGGTAAGCAGCCCGGCGGGCTCGACAGC GGCGATGACGGCGCCAGCGCGGAAAGACAGGTCGAAAGGAGAGAAAGTAC GGGACTGGACCGCCGCCGTTGCCCGACGAAAACGAGAGACGGGAGGAGGG GGTGACGTCGATGAGAATGGGAAGGGGGCGGCCGGTGGGGGTGGTGGTGG CGGCGGCAGCGGCGGCTGCGGCAGTGGTCGCACCGGTAATGTTGGCGGGA GATGGGGAGGATTGGAAAAGGGTGGTGAGGATAGCGTGGAAGAAAAAGAA GATGAAGAGGAGGAGGACAAAGCAGAGGAGGCGGCCGAGGAGTCAGGTGA GACGGCCTTAGAAAAACCCTCCTCGAGCAGCGGTGGCGGCGATCGCAAGA AAAGTAAGGGCAAAAAGAAGAAGAGAGGGGAAGCAGCGGGGGCGCCGGCG GCGGTGCAGCCCACCGGGGTGTTCGCGGCAGCCGCCTTCAGCTTCCTAGA CGAGGGCAGCAAGGAGAAGGGAGGCGGCGAAACGACCAGCAGCGATGACG ACGATGACGACGATGACGATGATGACGACGACAGCACCAGCAACGACAGC GACGGGAGCACCAACGGGCGGCGCCAGAATCAACCTCGTAAACGCGCAAG AACGGCGAACGGGGGCGCCGCCGCCGCCGCGGCCGGCGGCGGAGGCTCGG GCGACGGCGGCAGGCGCCGTCGCAGCGGCCCCGTCCCCCAGACATCGAGC ATGCTAGCGAGGGGTTTCCGCCCCGGGGGCGAGAGCGCCACCAGTAACGA GGACGGAGTCGAGAAAGAGGGCGGCAGCGAAGGCGACTTCGATGACGGGT GGGAGGAGGGCGAGGGGCAACAGGAGGAGGAGGAGGTGGAGTGGTACGAG GACACGCTCGGCGACATGGGCCGCTTGGGGTGGAGCCAGGTCTGGAGGAG GGGCGACGCGACGGCGGCGGCGGCGGGGGGGGGTGAGGGCGACGACGACG GGGACGGCCTGGACAAAGGCTCGAGGGCGTTGGCGAGGAAGGTAAGCGGC GGTGGCGCCGTCAGGCGAAGGCTGGGTGGTTGTTTTTGCTGCGCTTCGTT GATTTTCGCTCGATCGGGGTCGCGCCCCAGTGTTTGTTGTGTGACTGCTG TCTCATGCTGATCTCTTTCTCTCTCTCTGCCGTCATTCGCCGTTAGTGCC GTAAACTTCTCCTCGCCGACACCGCTGGATCTTCTCCTTCCTTGGAGAGC GGCGACGAGATCCTCGGACCGAAGGGGCTGAGCGCTTTGCTTCGGCTGGA GCTGACGGGAGCGGTGAGCGAGGCATCTACTTTGTTACTTTCCTTCTTTT TTTGCTCTCTTTTCAGGGAGCAAGCATTGTGATTATTTGTTTCGGGCCCT CCAACTCAGTCTTCGTTGCGCATCCGGCCTCACTCGCACACTGATCGAAT GTACACGTCGAAAAGCGACTGCGATCCACCTCCAAGCAACTTGTGTTGTT CACAGCTTTCATCATGTGCGGGCCGGCCCGAGCCATGTGCCAAGGGGTGC CTTTCGAAATCAGGTGTTGGTATTGTGTCTCAACGGTTCTCTGCCATCAA TAGCGCTGCCTAGCCTTGGAAGTAGGTTCTACGACGAGTGCGTTCCCTTC TTTCGTGATTTTTAATTGAACGATGGTGCACTTCCAACCGGCTTGAACTA TCCATCACCCCCATCAAGGTCTTCTTCCATTGACCGCATTTTTCTCGAGT GCGTGTTCTCGTTAGCGATGGTTAATTAACAGAAGAAGCCGTTCCAATTA TCAGAAGAAGCCGTTCCGACCGGCTTGATGTATCCCCCACGCTTTGTCTG CGAAAACAAAGCCGTAGAATCAAACACACCCAATCCTTGTTGAACCGGTA CCCCATCCACGAACGCACAGTCAACCCCGCCTCTGATATGGAACTCCACA TGCAAACGTCCTGTATCCCCTCGAGGAAGGTTTCCATGGAAGGCGTGCTT GTGTCGGCGCTGATGGGGAGGTCGTTGAAGCGAGACCACGGGTTTCTGGG CCGCTTGGCGCTGCAGCTCCTGTCGGGTATCGACGCCGCACATGCCTCGC CTCCGTCCCACCCGGAAGTGCTGAGCCTAGTCGTGGAAGAGCTGGAGGTG TGATATTGTGGCGGTTCGGTAACTGATTGCTGTTGTTGCCGTGAGAATCC CTCCCCCCACCGCATAATGTCTCTTGGTAAGGTTTCGGACGAAGCATAGG GGTGTTGTCGATACGCTTGGAAGCGTCGATGGTATAGGGGGTAAATCACC GCATGACGGATAGACAGACAGACAGACAGGCAGACAGGTGAACAAGGGCA AGAGAGCAATACCGATGAGATTGACGCAGAGATTGTTGCGGCGATGATGT TTCTTCATGTATGTTTTTTTGTGGGGGGAAGTTGATAGGGTCGGGGGGTA TCGCAACCCTCTGTGACGGAGCGTAGACGCTGCGCCCTACTCCCGTCGCG CTTTGGTTGTTCCCGTCTGTTCTATGTACTCAAGGACAACGAACCAAGAT TGTTTCGAACCTTGAACAACAGGCACCGGATAGTTTCAAAACCTTTACTG CAACACTCCGATCAACCTTCCATGCTTCGTTTTTCCATATCCTCCTCCCA ACACTATAGGGCCTTGCGGAGATAGTCGCGGCGCCATCGACGACGGCGCA TCTGAGGGGCTACGGCTGGGCCAGGGAGACTCGCCTCGCCCTGGAGCTCT TGTCGGAGACCCTCCTTGACTGGATGGACGAGAACCAGGCCAAGCGCTCC TCCGGGGTCGGGGAAGCCGAGAACGGGGACGAGGAGGACGATGACCCCGG GGGTTACTCTTCCATGAGTGAGGCTTTGTCTGTGTAGGGTAGTGCAGGGC GGGGCGCGGCGCGGCGGCGGTGTCTTTTTTTTTCTCGTCATTTTCGAGCG GTCTTACTCGTCGAGGAAGATACAGTGATACTCTCTTGTACTGACGTTGC TTCGAAAGTAATAATAACGCCACGCTGTGCTCCTGGCTAGTCGTCGTCGC AGGACAAATCGATGGACTCAGACCGCGTGGTGGAACGAATGACGTTGCAG TGTTTTTCAATGACCCTCTCGCGCAACACGCAAACTACGTCTGGATGATT CATGCGGTTGGTTTCGGATGGACGTCCCCCATATTTGTGTTGTGGCCTGC CGCGGTACACTCTGATTCGGGAACCTGAGCTTGACGCAAGCGTGCTAGCG GCAGCACGGGTGGTCGGGAGTTGTAGCAGTGGCAGAGGCGTCACCCACTT CCGACGAGCAACAGGTTAGGTGCGTAGCCATGGCTCGTCCACGTCGCGGA CATTCGTTCGTGACCAGATGCGCGCTGATGGACGTTTGTCCAAGCGTTTT CGGGCTAGAGCCACAGAGTTCGCCGTCGTGCCCGCAGCGAAAAGAATCAC TTGAAACGAACAGAGCAACCGTACATACCCTCGAGAAATCATGCCCCATC ATGGCATGATGAAAGGGATTGTTGGCCCCATGGCGTCGACCCTTACGCTC GGCTCTTTTTGTGACGACAACGACCCCCCCAGGCTTCGGAAACAGCAAGA AAAAGAAAAAGAAGAAAGCGAAGGACAAGGGTTTTGGCGCAGGCGCCAGC GCTGGGAGTTTGACCGGGAAAGGAGGCGTCGGCGAAGAGGGGGGAGGGGA CGCTTGGAGGGCTGAGGCGGAGGCTACGGTGTTGTGGTGGTGGGAGACGG ACGAGGAGGCGAGGATTCCGTGGGCCGTGGCGAGGCTTCTCGGCCTGTTG CTCAGGTGGGGGAGATCCCACCGGCCTGTAACGGGGAACAAGTCTGGCCC TTTCGATTTTTTTTCGGCTTTGATGCCGCATGGCGAAGAATTCTCGCAGT TGTTGTTGCTGTTGTTACTATTGCTGCTATTATTGTTGCTTCTGCTTTTG ATTTTTCTGTTGCTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT GTTGCTGTTGTTGTTATTGTTGTTTCTTCTATCGATGAAGATGGAAACAG CACCACCAACCATCAACCTGTCGTCACGTCCAAAACGTTTCCATTTTTTT GGAATCCGTTCTACCAACCCGACCCCCCACCAGGCGGCTGGACCAGCCCC AGCGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6658:2923..8077+

>mRNA_Ecto-sp13_S_contig6658.17528.1 ID=mRNA_Ecto-sp13_S_contig6658.17528.1|Name=mRNA_Ecto-sp13_S_contig6658.17528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2370bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6658:2923..8077+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTCAAGGCCAAGGGGGCACGAGGAAAGCATGGCGGGGGTGGCGG
CGGCGGCGGCGGCGGCAAATCGGAAGGGAAAAAGGACAGCAGCGCCAAGC
GCTGCAAGAAGTGCACCGCACTACTCCCAATGATGTACAAGATGAAGGAC
AAGCTCGCGGAGCTTCACCCGCAGTGCAACCAGTACAAACTGGAGCTCGA
CGCTCTCAGAGCCGAGAACCAGGAGCTCCGGCGTCAGCTCGCGATGCCCC
CCTCTGCAAGAACGCCGCCTGGGCGAACCGCACCCCCCACGTGGTCCACG
AATTCGTCGGTGTCTCCGGTAAGACAGCGGGCTCTGGGCTCGTCTGCTAC
CACGACAACAGCAGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAAGAGCAGCAACAGCAGCAGCAGGGGCACCGTCAAAGAAGGGA
AGCAACGGTGCCGCTGTCGTCGTCTCTCGTCCGGACGCCGTCAGCGAAAA
GAGGAAGACGCCAGCACCGTCTTCGGGTGGAACTCAAGGTACGGGCCTCA
CCGCCAGTCTCGGCCTCGGCAGGGGCACCGCAGACAGCGGCGGCGGGAAC
GGCGGCGGGGGCGGGGTAAGCAGCCCGGCGGGCTCGACAGCGGCGATGAC
GGCGCCAGCGCGGAAAGACAGGTCGAAAGGAGAGAAAGTACGGGACTGGA
CCGCCGCCGTTGCCCGACGAAAACGAGAGACGGGAGGAGGGGGTGACGTC
GATGAGAATGGGAAGGGGGCGGCCGGTGGGGGTGGTGGTGGCGGCGGCAG
CGGCGGCTGCGGCAGTGGTCGCACCGGTAATGTTGGCGGGAGATGGGGAG
GATTGGAAAAGGGTGGTGAGGATAGCGTGGAAGAAAAAGAAGATGAAGAG
GAGGAGGACAAAGCAGAGGAGGCGGCCGAGGAGTCAGGTGAGACGGCCTT
AGAAAAACCCTCCTCGAGCAGCGGTGGCGGCGATCGCAAGAAAAGTAAGG
GCAAAAAGAAGAAGAGAGGGGAAGCAGCGGGGGCGCCGGCGGCGGTGCAG
CCCACCGGGGTGTTCGCGGCAGCCGCCTTCAGCTTCCTAGACGAGGGCAG
CAAGGAGAAGGGAGGCGGCGAAACGACCAGCAGCGATGACGACGATGACG
ACGATGACGATGATGACGACGACAGCACCAGCAACGACAGCGACGGGAGC
ACCAACGGGCGGCGCCAGAATCAACCTCGTAAACGCGCAAGAACGGCGAA
CGGGGGCGCCGCCGCCGCCGCGGCCGGCGGCGGAGGCTCGGGCGACGGCG
GCAGGCGCCGTCGCAGCGGCCCCGTCCCCCAGACATCGAGCATGCTAGCG
AGGGGTTTCCGCCCCGGGGGCGAGAGCGCCACCAGTAACGAGGACGGAGT
CGAGAAAGAGGGCGGCAGCGAAGGCGACTTCGATGACGGGTGGGAGGAGG
GCGAGGGGCAACAGGAGGAGGAGGAGGTGGAGTGGTACGAGGACACGCTC
GGCGACATGGGCCGCTTGGGGTGGAGCCAGGTCTGGAGGAGGGGCGACGC
GACGGCGGCGGCGGCGGGGGGGGGTGAGGGCGACGACGACGGGGACGGCC
TGGACAAAGGCTCGAGGGCGTTGGCGAGGAAGTGCCGTAAACTTCTCCTC
GCCGACACCGCTGGATCTTCTCCTTCCTTGGAGAGCGGCGACGAGATCCT
CGGACCGAAGGGGCTGAGCGCTTTGCTTCGGCTGGAGCTGACGGGAGCGG
TTTCCATGGAAGGCGTGCTTGTGTCGGCGCTGATGGGGAGGTCGTTGAAG
CGAGACCACGGGTTTCTGGGCCGCTTGGCGCTGCAGCTCCTGTCGGGTAT
CGACGCCGCACATGCCTCGCCTCCGTCCCACCCGGAAGTGCTGAGCCTAG
TCGTGGAAGAGCTGGAGGGCCTTGCGGAGATAGTCGCGGCGCCATCGACG
ACGGCGCATCTGAGGGGCTACGGCTGGGCCAGGGAGACTCGCCTCGCCCT
GGAGCTCTTGTCGGAGACCCTCCTTGACTGGATGGACGAGAACCAGGCCA
AGCGCTCCTCCGGGGTCGGGGAAGCCGAGAACGGGGACGAGGAGGACGAT
GACCCCGGGGGTTACTCTTCCATGAGCTTCGGAAACAGCAAGAAAAAGAA
AAAGAAGAAAGCGAAGGACAAGGGTTTTGGCGCAGGCGCCAGCGCTGGGA
GTTTGACCGGGAAAGGAGGCGTCGGCGAAGAGGGGGGAGGGGACGCTTGG
AGGGCTGAGGCGGAGGCTACGGTGTTGTGGTGGTGGGAGACGGACGAGGA
GGCGAGGATTCCGTGGGCCGTGGCGAGGCTTCTCGGCCTGTTGCTCAGGC
GGCTGGACCAGCCCCAGCGC
back to top