mRNA_Ecto-sp13_S_contig66574.17527.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66574.17527.1
Unique NamemRNA_Ecto-sp13_S_contig66574.17527.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66574.17527.1 vs. uniprot
Match: A0A6H5KRE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.510e-40
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3 
Query:    6 MAAATGIRVRQHAHRDDLNGEVTLPCILDRLSRLEHESFSYHELLDDFASRRRVGPVKKELPAKHVLDPAEEADEIVQA 242
            MAA T IRVRQHA RDDL+GEVTLPCILDRLSRLEHESFSYHELLDDFA RRRVGPVKKELPAKHVLDPAEEAD+IVQA
Sbjct:    1 MAATTVIRVRQHARRDDLDGEVTLPCILDRLSRLEHESFSYHELLDDFAGRRRVGPVKKELPAKHVLDPAEEADKIVQA 79
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BLAST of mRNA_Ecto-sp13_S_contig66574.17527.1 vs. uniprot
Match: D7FJ20_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ20_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.020e-36
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 3 
Query:    6 MAAATGIRVRQHAHRDDLNGEVTLPCILDRLSRLEHESFSYHELLDDFASRRRVGPVKKELPAKHVLDPAEEADEIVQ 239
            MAA   +RVRQHA  DDL+GEVTLPCILDRLSRLEH+S SYHELLDDFASRRRVGPVKKELPAKHVLDPAEEADEIVQ
Sbjct:    1 MAATAEVRVRQHAGCDDLDGEVTLPCILDRLSRLEHDSCSYHELLDDFASRRRVGPVKKELPAKHVLDPAEEADEIVQ 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66574.17527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRE3_9PHAE1.510e-4092.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ20_ECTSI4.020e-3688.46Calmodulin-binding WW domain protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66574contigEcto-sp13_S_contig66574:3..675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score140.2
Seed ortholog evalue6.6e-31
Seed eggNOG ortholog2880.D7FJ20
Model size384
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs2C7AG@1,2RKVS@2759
Cds size378
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463916.2776952-CDS-Ecto-sp13_S_contig66574:2..1461681463916.2776952-CDS-Ecto-sp13_S_contig66574:2..146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66574 3..146 -
1681463916.2892072-CDS-Ecto-sp13_S_contig66574:436..6701681463916.2892072-CDS-Ecto-sp13_S_contig66574:436..670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66574 437..670 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463916.2994876-UTR-Ecto-sp13_S_contig66574:670..6751681463916.2994876-UTR-Ecto-sp13_S_contig66574:670..675Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66574 671..675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66574.17527.1prot_Ecto-sp13_S_contig66574.17527.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66574 3..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66574.17527.1

>prot_Ecto-sp13_S_contig66574.17527.1 ID=prot_Ecto-sp13_S_contig66574.17527.1|Name=mRNA_Ecto-sp13_S_contig66574.17527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MAAATGIRVRQHAHRDDLNGEVTLPCILDRLSRLEHESFSYHELLDDFAS
RRRVGPVKKELPAKHVLDPAEEADEIVQAYLSVNHGACSSRAFRHIGPLA
PLALSGLAAVDRLGKRPYPNTKRPRN
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mRNA from alignment at Ecto-sp13_S_contig66574:3..675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66574.17527.1 ID=mRNA_Ecto-sp13_S_contig66574.17527.1|Name=mRNA_Ecto-sp13_S_contig66574.17527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=673bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66574:3..675- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCAATGGCTGCTGCCACCGGGATTCGGGTTCGTCAGCATGCCCATCGC
GATGACCTTAATGGCGAGGTCACGCTACCGTGCATCCTAGACCGTCTCTC
GAGGCTTGAACATGAAAGCTTTTCATACCACGAGCTGCTCGACGACTTCG
CCAGCCGAAGGCGCGTAGGCCCCGTGAAGAAGGAGCTGCCGGCGAAGCAC
GTGCTCGACCCCGCTGAAGAGGCAGACGAGATCGTACAGGTTACAAAATC
AACAGTGCATTTATTTACCAGAGCCATATATACACAACACAGCTGATTGT
TGTGTACTTTTGTACTGCTGTTGACAGCAGTAGACTAGCTGCTGTACAAC
AACGGAGTGTCGGAAATTTGTTGCTCGAAGGTGTAGACTAGACTAAGGGT
TTGATTTGAGTAAAGCATTGGTACAACTGTATACTCTTCCATGATTGATT
TCAAAGCAATTAGTGCATTGAGGTACACTCCAGGTATTCTTAGCGACCAT
CGTGTACTCGGTCCACCGCGTGCAAACAGGCATACTTATCCGTGAACCAT
GGAGCTTGTTCATCAAGGGCATTTCGCCACATCGGCCCGCTTGCTCCCTT
GGCACTGAGCGGCTTAGCCGCTGTCGACCGTCTCGGTAAGAGACCATACC
CTAACACGAAGAGACCTCGAAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66574:3..675-

>mRNA_Ecto-sp13_S_contig66574.17527.1 ID=mRNA_Ecto-sp13_S_contig66574.17527.1|Name=mRNA_Ecto-sp13_S_contig66574.17527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66574:3..675- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCTGCCACCGGGATTCGGGTTCGTCAGCATGCCCATCGCGATGA
CCTTAATGGCGAGGTCACGCTACCGTGCATCCTAGACCGTCTCTCGAGGC
TTGAACATGAAAGCTTTTCATACCACGAGCTGCTCGACGACTTCGCCAGC
CGAAGGCGCGTAGGCCCCGTGAAGAAGGAGCTGCCGGCGAAGCACGTGCT
CGACCCCGCTGAAGAGGCAGACGAGATCGTACAGGCATACTTATCCGTGA
ACCATGGAGCTTGTTCATCAAGGGCATTTCGCCACATCGGCCCGCTTGCT
CCCTTGGCACTGAGCGGCTTAGCCGCTGTCGACCGTCTCGGTAAGAGACC
ATACCCTAACACGAAGAGACCTCGAAAT
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