mRNA_Ecto-sp13_S_contig6657.17525.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6657.17525.1
Unique NamemRNA_Ecto-sp13_S_contig6657.17525.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: D7FJU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJU1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.190e-29
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P   ++PGRGINMGDGWETARK DRP VLE+GPDGL  APG DWAILRLGV GE+K L+VDTNHFK  FP
Sbjct:  232 PKNMIKPGRGINMGDGWETARKTDRPTVLEIGPDGLVKAPGSDWAILRLGVIGEVKRLVVDTNHFKGNFP 301
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: A0A836C8W1_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.550e-21
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P   + PGRG  MGDGWETARK  RPAVL+VG DGL  APG DWA++RLG  GEI  L+VDT+ FK  FP
Sbjct:  254 PRNLILPGRGATMGDGWETARKPTRPAVLQVGADGLVEAPGSDWAVIRLGTAGEISRLVVDTHFFKGNFP 323
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: A0A1V9YXF3_9STRA (Allantoicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXF3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.820e-21
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P + LQPGRG+NMGDGWETARKK RPAVL V   GL   PG DW +L+LG  G I  + VDT HFK  FP
Sbjct:  223 PMILLQPGRGVNMGDGWETARKKTRPAVLTVDASGLLTVPGSDWVVLKLGHVGVIDRVEVDTAHFKGNFP 292
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: A0A067CPH8_SAPPC (Allantoicase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPH8_SAPPC)

HSP 1 Score: 89.7 bits (221), Expect = 1.190e-19
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P   LQPGRG+NMGDGWETARKK RPA+L V   GL   PG DW +L+LG  G ++ + VDT HFK  FP
Sbjct:  223 PRNLLQPGRGVNMGDGWETARKKTRPAILTVDARGLLTVPGDDWVVLKLGHVGIVERIEVDTAHFKGNFP 292
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: UPI000771901A (allantoicase n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771901A)

HSP 1 Score: 89.7 bits (221), Expect = 1.220e-19
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P   ++PGRG+NMGDGWETAR+ DRP ++EV   G+   PG +WAI +LG  GEI  + VDTNHFK  FP
Sbjct:  233 PRNLIKPGRGVNMGDGWETARRLDRPPIIEVDNAGILRVPGSEWAIFKLGHVGEIHRIEVDTNHFKGNFP 302
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: A0A8K0GJ82_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0GJ82_9COLE)

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-19
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P   ++PG+G+NMGDGWETAR+ DRPA+LE  P G+   PG +WA+ RLG  G +  + VDT HFK  FP
Sbjct:  233 PRNLIRPGQGVNMGDGWETARRLDRPAILETDPYGILQVPGNEWAVFRLGYIGSVNYIEVDTKHFKGNFP 302
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: UPI0009E2F0D4 (allantoicase-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2F0D4)

HSP 1 Score: 83.6 bits (205), Expect = 3.250e-19
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P   + PG  +NMGDGWETAR+ DRP+VLE+G DG    PG +W+I+ LG  G +K + VDT HFK  FP
Sbjct:   25 PRNLIAPGTAVNMGDGWETARRLDRPSVLELGEDGCLKVPGCEWSIIHLGHPGTLKKIEVDTAHFKGNFP 94
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: A0A4C1STI1_EUMVA (Allantoate amidinohydrolase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1STI1_EUMVA)

HSP 1 Score: 88.6 bits (218), Expect = 4.050e-19
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P  T++PGRG+NMGDGWETAR+ DRP VL    DG    PG +WA+ +LG  GE+  + VDT HFK  FP
Sbjct:  264 PRNTIKPGRGVNMGDGWETARRLDRPEVLRANADGTLSVPGEEWAVYKLGYVGEVVKVCVDTRHFKGNFP 333
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BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: UPI0006252A57 (allantoicase-like n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI0006252A57)

HSP 1 Score: 85.9 bits (211), Expect = 3.150e-18
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGL--APGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P   ++PGRGINMGDGWETAR+ DRP VLE    G+   PG +WA  +LG  G ++ + VDT HFK  FP
Sbjct:  233 PRNLIKPGRGINMGDGWETARRLDRPPVLEADDSGMLRVPGSEWAFFKLGHVGVVRSIEVDTQHFKGNFP 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Match: UPI001D07D2F0 (allantoicase-like n=2 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D07D2F0)

HSP 1 Score: 85.9 bits (211), Expect = 3.480e-18
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGLA--PGGDWAILRLGVTGEIKCLMVDTNHFKKKFP 204
            P   ++PG+G+NMGDGWETAR+ DRP +LE    G    PG +WA+ RLG  G +  L VDTNHFK  FP
Sbjct:  239 PRNLIRPGKGVNMGDGWETARRLDRPPILECDDKGCLTLPGSEWALFRLGYMGTVNRLEVDTNHFKGNFP 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6657.17525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJU1_ECTSI6.190e-2975.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8W1_9STRA1.550e-2164.29Galactose-binding domain-like protein n=1 Tax=Trib... [more]
A0A1V9YXF3_9STRA8.820e-2162.86Allantoicase n=1 Tax=Achlya hypogyna TaxID=1202772... [more]
A0A067CPH8_SAPPC1.190e-1960.00Allantoicase n=2 Tax=Saprolegnia TaxID=4769 RepID=... [more]
UPI000771901A1.220e-1957.14allantoicase n=1 Tax=Cephus cinctus TaxID=211228 R... [more]
A0A8K0GJ82_9COLE1.300e-1954.29Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
UPI0009E2F0D43.250e-1954.29allantoicase-like n=1 Tax=Orbicella faveolata TaxI... [more]
A0A4C1STI1_EUMVA4.050e-1955.71Allantoate amidinohydrolase n=1 Tax=Eumeta variega... [more]
UPI0006252A573.150e-1854.29allantoicase-like n=1 Tax=Athalia rosae TaxID=3734... [more]
UPI001D07D2F03.480e-1854.29allantoicase-like n=2 Tax=Chrysoperla carnea TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6657contigEcto-sp13_S_contig6657:4865..5165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.9
Seed ortholog evalue7.2e-24
Seed eggNOG ortholog2880.D7FJU1
Preferred nameALLC
Model size204
KEGG rclassRC00379,RC00712
KEGG koko:K01477
KEGG ReactionR02422
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000255,GO:0003674,GO:0003824,GO:0004037,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0016787,GO:0016810,GO:0016813,GO:0017144,GO:0019954,GO:0030587,GO:0031152,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0033554,GO:0034641,GO:0042594,GO:0043170,GO:0043603,GO:0044237,GO:0044764,GO:0046483,GO:0048856,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071704,GO:0090702,GO:0098630,GO:0098743,GO:0099120,GO:1901360,GO:1901564
Exons2
EggNOG free text desc.allantoicase activity
EggNOG OGsCOG4266@1,KOG4145@2759
EC3.5.3.4
Cds size204
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463916.131106-CDS-Ecto-sp13_S_contig6657:4864..49601681463916.131106-CDS-Ecto-sp13_S_contig6657:4864..4960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6657 4865..4960 -
1681463916.1706958-CDS-Ecto-sp13_S_contig6657:5057..51651681463916.1706958-CDS-Ecto-sp13_S_contig6657:5057..5165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6657 5058..5165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6657.17525.1prot_Ecto-sp13_S_contig6657.17525.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6657 4865..5165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6657.17525.1

>prot_Ecto-sp13_S_contig6657.17525.1 ID=prot_Ecto-sp13_S_contig6657.17525.1|Name=mRNA_Ecto-sp13_S_contig6657.17525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
PALTLQPGRGINMGDGWETARKKDRPAVLEVGPDGLAPGGDWAILRLGVT
GEIKCLMVDTNHFKKKFP
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mRNA from alignment at Ecto-sp13_S_contig6657:4865..5165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6657.17525.1 ID=mRNA_Ecto-sp13_S_contig6657.17525.1|Name=mRNA_Ecto-sp13_S_contig6657.17525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=301bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6657:4865..5165- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCCTTAACGCTACAGCCGGGACGGGGAATAAACATGGGCGATGGCTG
GGAAACCGCGAGAAAGAAGGATCGTCCCGCCGTCCTAGAGGTCGGACCTG
ACGGCCTGGTGGCCATTCGTTCCTCCTTTCATCATCAGCCTCCGTTCCCC
TTTGCTAGATTCTGAGATGATCCTGCTCCTCCCCATCTCCGAAATTCTAC
ACCAGGCACCGGGAGGCGATTGGGCTATTCTCCGGCTGGGGGTGACCGGG
GAGATAAAGTGTCTCATGGTCGACACCAACCACTTCAAAAAAAAGTTCCC
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6657:4865..5165-

>mRNA_Ecto-sp13_S_contig6657.17525.1 ID=mRNA_Ecto-sp13_S_contig6657.17525.1|Name=mRNA_Ecto-sp13_S_contig6657.17525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6657:4865..5165- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCCTTAACGCTACAGCCGGGACGGGGAATAAACATGGGCGATGGCTG
GGAAACCGCGAGAAAGAAGGATCGTCCCGCCGTCCTAGAGGTCGGACCTG
ACGGCCTGGCACCGGGAGGCGATTGGGCTATTCTCCGGCTGGGGGTGACC
GGGGAGATAAAGTGTCTCATGGTCGACACCAACCACTTCAAAAAAAAGTT
CCCG
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