mRNA_Ecto-sp13_S_contig66569.17523.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66569.17523.1
Unique NamemRNA_Ecto-sp13_S_contig66569.17523.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66569.17523.1 vs. uniprot
Match: D7FK96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK96_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.590e-18
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 QANGKGNEFRKAATSSGLKLLAFFAAVRVAHYAMNRPR 114
            QANGKGNEFRKAATSSGLKLLAFFAAVRVAHYAMNRPR
Sbjct:    9 QANGKGNEFRKAATSSGLKLLAFFAAVRVAHYAMNRPR 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66569.17523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK96_ECTSI5.590e-18100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66569contigEcto-sp13_S_contig66569:173..289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003260.1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463916.071172-CDS-Ecto-sp13_S_contig66569:172..2891681463916.071172-CDS-Ecto-sp13_S_contig66569:172..289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66569 173..289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66569.17523.1prot_Ecto-sp13_S_contig66569.17523.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66569 173..289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66569.17523.1

>prot_Ecto-sp13_S_contig66569.17523.1 ID=prot_Ecto-sp13_S_contig66569.17523.1|Name=mRNA_Ecto-sp13_S_contig66569.17523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
QANGKGNEFRKAATSSGLKLLAFFAAVRVAHYAMNRPR*
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mRNA from alignment at Ecto-sp13_S_contig66569:173..289-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66569.17523.1 ID=mRNA_Ecto-sp13_S_contig66569.17523.1|Name=mRNA_Ecto-sp13_S_contig66569.17523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66569:173..289- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTAACGGCAAGGGGAACGAGTTCCGGAAGGCAGCGACGTCGTCGGG
GTTGAAGCTCCTGGCGTTCTTCGCCGCTGTGCGAGTCGCTCACTACGCTA
TGAACCGACCAAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66569:173..289-

>mRNA_Ecto-sp13_S_contig66569.17523.1 ID=mRNA_Ecto-sp13_S_contig66569.17523.1|Name=mRNA_Ecto-sp13_S_contig66569.17523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66569:173..289- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTAACGGCAAGGGGAACGAGTTCCGGAAGGCAGCGACGTCGTCGGG
GTTGAAGCTCCTGGCGTTCTTCGCCGCTGTGCGAGTCGCTCACTACGCTA
TGAACCGACCAAGATGA
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