mRNA_Ecto-sp13_S_contig66565.17522.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66565.17522.1
Unique NamemRNA_Ecto-sp13_S_contig66565.17522.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66565.17522.1 vs. uniprot
Match: A0A6H5KJ38_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ38_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 8.140e-41
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 AGQRAGAPTLAVPATGAAVGTTTSALLFSALRVVLEDRVGGRGWLGSVRELQSVCFDTCKECRKVVPVRLRVSDSTPGHLWKK 249
            AGQR  APTLAV ATGAAV TTTSALLFSALR+VLEDRVGGRGWLGSVRELQSVCFD CKECRKVVPVRLRVSDSTPGHLW+K
Sbjct:   54 AGQRTRAPTLAVRATGAAVRTTTSALLFSALRMVLEDRVGGRGWLGSVRELQSVCFDACKECRKVVPVRLRVSDSTPGHLWRK 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66565.17522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ38_9PHAE8.140e-4191.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66565contigEcto-sp13_S_contig66565:408..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size254
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_005080.2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463916.032688-CDS-Ecto-sp13_S_contig66565:407..6591681463916.032688-CDS-Ecto-sp13_S_contig66565:407..659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66565 408..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66565.17522.1prot_Ecto-sp13_S_contig66565.17522.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66565 408..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66565.17522.1

>prot_Ecto-sp13_S_contig66565.17522.1 ID=prot_Ecto-sp13_S_contig66565.17522.1|Name=mRNA_Ecto-sp13_S_contig66565.17522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
AGQRAGAPTLAVPATGAAVGTTTSALLFSALRVVLEDRVGGRGWLGSVRE
LQSVCFDTCKECRKVVPVRLRVSDSTPGHLWKKG
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mRNA from alignment at Ecto-sp13_S_contig66565:408..661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66565.17522.1 ID=mRNA_Ecto-sp13_S_contig66565.17522.1|Name=mRNA_Ecto-sp13_S_contig66565.17522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66565:408..661+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGCCAGCGCGCGGGAGCACCGACCCTAGCGGTACCTGCGACCGGTGC
CGCCGTTGGAACCACCACCAGCGCGCTACTCTTCTCCGCTCTTCGCGTGG
TGCTGGAGGATCGTGTCGGGGGTCGTGGGTGGCTGGGATCGGTTCGAGAG
CTACAGAGCGTGTGCTTCGATACCTGCAAGGAGTGCCGCAAGGTCGTGCC
TGTCCGTCTCCGTGTGTCGGACTCGACACCAGGCCACCTGTGGAAGAAGG
GAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66565:408..661+

>mRNA_Ecto-sp13_S_contig66565.17522.1 ID=mRNA_Ecto-sp13_S_contig66565.17522.1|Name=mRNA_Ecto-sp13_S_contig66565.17522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66565:408..661+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGCCAGCGCGCGGGAGCACCGACCCTAGCGGTACCTGCGACCGGTGC
CGCCGTTGGAACCACCACCAGCGCGCTACTCTTCTCCGCTCTTCGCGTGG
TGCTGGAGGATCGTGTCGGGGGTCGTGGGTGGCTGGGATCGGTTCGAGAG
CTACAGAGCGTGTGCTTCGATACCTGCAAGGAGTGCCGCAAGGTCGTGCC
TGTCCGTCTCCGTGTGTCGGACTCGACACCAGGCCACCTGTGGAAGAAGG
GA
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