mRNA_Ecto-sp13_S_contig12053.1752.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12053.1752.1
Unique NamemRNA_Ecto-sp13_S_contig12053.1752.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Match: A0A6H5JR78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE)

HSP 1 Score: 528 bits (1360), Expect = 2.830e-170
Identity = 298/384 (77.60%), Postives = 314/384 (81.77%), Query Frame = 2
Query:  143 NSTVSGRNSPLRETTNVGPARFTEEEEGPPLGMHTTLEEVPSPPDHPGGKQLMLYQPLPFGMTVQDTAGADGGESGDGGS-------------------------------------ARAVVSDAMGTSAWVPEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLSSAREVSPALVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRRRQQALDLARQEALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQQERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEAREAAAADRAEQEAIIHSTEGSLVETQRELRETRQGVMESRGVVEELQHQLKNIE 1183
            N TVSGR+SPL E+ NV PA FTE+EEGPP GMH+T +E+PSPPDHPGGKQL+LYQPLPFGM VQDT GADGGES +GGS                                     ARAVVSDAMGTS WV EGPP HIAV DSDDGAEDE HPL +P H ESVTLET LDSA P DNGLSSAREVSPALV WGDRRITQPHPAVVGVVSAIIAGAV+LLL QWRARRTR R+QAL LARQ+ALRRVILRDAGRSRQREVSDFWRWRLATA GVV  LR Q ERA AEHEAARAADREAAQERQEAAVGVVTA+ETRRRESAETALDEAREAAAADRAEQEA++HSTEGSLVETQRELRETRQGV ES+GVVEELQ QLKNIE
Sbjct:  106 NGTVSGRDSPLPESANVDPAAFTEDEEGPPFGMHSTPKEIPSPPDHPGGKQLVLYQPLPFGMIVQDTEGADGGESRNGGSRNPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAVVSDAMGTSNWVLEGPPSHIAVVDSDDGAEDEQHPLTKPPHVESVTLETVLDSAQPDDNGLSSAREVSPALVRWGDRRITQPHPAVVGVVSAIIAGAVVLLLRQWRARRTRLRRQALGLARQDALRRVILRDAGRSRQREVSDFWRWRLATATGVVADLRVQHERAAAEHEAARAADREAAQERQEAAVGVVTAMETRRRESAETALDEAREAAAADRAEQEALVHSTEGSLVETQRELRETRQGVTESQGVVEELQQQLKNIE 489          
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Match: D7FTQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ8_ECTSI)

HSP 1 Score: 445 bits (1145), Expect = 8.210e-141
Identity = 258/381 (67.72%), Postives = 273/381 (71.65%), Query Frame = 2
Query:  140 PNSTVSGRNSPLRETTNVGPARFTEEEEGPPLGMHTTLEEVPSPPDHPGGKQLMLYQPLPFGMTVQDTAGADGGESGDGGS--------------------------------------------------------------------------ARAVVSDAMGTSAWVPEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLSSAREVSPALVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRRRQQALDLARQEALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQQERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEAREAAAADRAEQEA 1060
            PNSTVSGR+SPLRET NVGPA FTEEEEGPP GMHTT EE+PSPPDHPGGK+L+LYQPLPF M V DT GADGGESGDGGS                                                                           RAVVSDAMGTSAWVPEGPP H AV +SDDGAED+LHP PEPLHAE VTLET LDSA P DNGLSSAREVSPALV W  RRI QPHPAVVGVVSAI AGAV+LLLCQWR+RRTR RQQAL L RQ+ALRRVIL+DA RSRQREVS FWRWRLA++ G+V  LRAQ ERA AE+EAARA DREAAQ RQEAAVG+VTAVETRRRESAETALDEAREAAAADRAEQEA
Sbjct:   83 PNSTVSGRDSPLRETANVGPAAFTEEEEGPPFGMHTTPEEIPSPPDHPGGKELVLYQPLPFVMIVPDTEGADGGESGDGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRAVVSDAMGTSAWVPEGPPSHTAVVNSDDGAEDKLHPHPEPLHAEPVTLETVLDSAQPDDNGLSSAREVSPALVRWDGRRIAQPHPAVVGVVSAIFAGAVVLLLCQWRSRRTRLRQQALGLPRQDALRRVILKDADRSRQREVSVFWRWRLASSTGIVADLRAQGERAAAENEAARAIDREAAQGRQEAAVGMVTAVETRRRESAETALDEAREAAAADRAEQEA 463          
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Match: D7FSR8_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 1.140e-118
Identity = 244/416 (58.65%), Postives = 256/416 (61.54%), Query Frame = 2
Query:  137 QPNSTVSGRNSPLRETTNVGPARFTEEEEGPPLGMHTTLEEVPSPPDHPGGKQLMLYQPLPFGMTVQDTAGADGGESGDGG---------------------------------------------------------------------------------------------------------------SARAVVSDAMGTSAWVPEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLSSAREVSPALVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRRRQQALDLARQEALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQQERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEAREAAAADRAE 1051
            +PNSTVSGR+SP RET NVGPA FTE EE PP GMHTT E+ P PPDHPGGK+L+LYQPLPF +  Q TAGADGGES +GG                                                                                                               SARAVVSDA+GTSAWVPEGPP HIA  DS+DGA DELHPLPEPLHAESVTLET LDSA   DNGL SAREVSPALV WGDRRITQ H AVVGVV AI AGAV+L LCQWR+RRTR RQQAL LARQ ALRRVILRDA R RQREVS FWR RLATA GVVTGLRAQ ERA AEHEA RA DRE AQE+QEAAV  VTAVET RRE AETALDE  EAAAADR E
Sbjct:    3 KPNSTVSGRDSP-RETANVGPAVFTEGEEAPPFGMHTTPEDRPLPPDHPGGKELVLYQPLPFAVDCQCTAGADGGESREGGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARAVVSDAIGTSAWVPEGPPSHIAGVDSEDGAGDELHPLPEPLHAESVTLETVLDSAQSDDNGLLSAREVSPALVRWGDRRITQKHLAVVGVVPAISAGAVVLFLCQWRSRRTRLRQQALGLARQGALRRVILRDAVRLRQREVSSFWRLRLATATGVVTGLRAQGERAAAEHEATRATDREDAQEQQEAAVAEVTAVETARRELAETALDEKCEAAAADRVE 417          
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Match: A0A6H5KS24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS24_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 4.580e-63
Identity = 196/511 (38.36%), Postives = 207/511 (40.51%), Query Frame = 2
Query:  407 MGTSAWVPEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLSSAREVSPA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRRRQQA-----------LDLARQ-----------------------------------------------------EALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQQERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEAREAAAADRAEQEAIIHSTEGSLVETQRELRETRQGVMESRGVVEELQHQLKNIE 1183
            MGTSAWVPEGPP HIAV DSDDGA DEL+PLPEPLHAESVTLET LDSA    NGLSSAREVSPA                                                                                                                                                                                            LV WGDRRITQ H AVVGVV AI AGAV+LLLCQWR+  TR RQQA            D +RQ                                                     EALRRVI+RDA RSRQREVS FWRWRLATA GVVTGLRAQ ERA  EHE  RAADREAAQER+EAAVGVVTAVET RRE  ET LDE REAAAADRAEQ+A +   E  +  T+           ESRGV+EELQ QLK IE
Sbjct:    1 MGTSAWVPEGPPSHIAVGDSDDGAGDELYPLPEPLHAESVTLETVLDSAQSNGNGLSSAREVSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVCWGDRRITQQHLAVVGVVPAIFAGAVVLLLCQWRSWPTRLRQQAPEALRRVIIRDADRSRQREVSAFWRWRLATATGVVTGLRAQYERAAPEHETDRAADREAAQERREAAVGVEALRRVIIRDADRSRQREVSAFWRWRLATATGVVTGLRAQYERAAPEHETDRAADREAAQERREAAVGVVTAVETARREMGETTLDETREAAAADRAEQQARMEELEAQIHSTE-----------ESRGVLEELQQQLKKIE 500          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JR78_9PHAE2.830e-17077.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTQ8_ECTSI8.210e-14167.72Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FSR8_ECTSI1.140e-11858.65Similar to deubiquitinating enzyme 3 n=1 Tax=Ectoc... [more]
A0A6H5KS24_9PHAE4.580e-6338.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12053contigEcto-sp13_S_contig12053:2531..4003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score389.0
Seed ortholog evalue2.3e-105
Seed eggNOG ortholog2880.D7FSR8
Model size1183
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
Cds size1056
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.5105777-UTR-Ecto-sp13_S_contig12053:2530..26571681462640.5105777-UTR-Ecto-sp13_S_contig12053:2530..2657Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12053 2531..2657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.5221338-CDS-Ecto-sp13_S_contig12053:2657..32721681462640.5221338-CDS-Ecto-sp13_S_contig12053:2657..3272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12053 2658..3272 +
1681462640.5322778-CDS-Ecto-sp13_S_contig12053:3562..40031681462640.5322778-CDS-Ecto-sp13_S_contig12053:3562..4003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12053 3563..4003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12053.1752.1prot_Ecto-sp13_S_contig12053.1752.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12053 2658..4003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12053.1752.1

>prot_Ecto-sp13_S_contig12053.1752.1 ID=prot_Ecto-sp13_S_contig12053.1752.1|Name=mRNA_Ecto-sp13_S_contig12053.1752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp
MCSQPNSTVSGRNSPLRETTNVGPARFTEEEEGPPLGMHTTLEEVPSPPD
HPGGKQLMLYQPLPFGMTVQDTAGADGGESGDGGSARAVVSDAMGTSAWV
PEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLS
SAREVSPALVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRR
RQQALDLARQEALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQ
QERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEARE
AAAADRAEQEAIIHSTEGSLVETQRELRETRQGVMESRGVVEELQHQLKN
IE
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mRNA from alignment at Ecto-sp13_S_contig12053:2531..4003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12053.1752.1 ID=mRNA_Ecto-sp13_S_contig12053.1752.1|Name=mRNA_Ecto-sp13_S_contig12053.1752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12053:2531..4003+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCTTGGAAGTTACGGACCGGAGCCTTTGGGTGTAAGCGGGAATAAATT TCACGAAGCGGAGCGGTGTTTCGAGAACCAACAACCTCTCCATTCCTCTC CAACCTTGCCCCCATGGTTATCGCTGCATGTGTTCGCAGCCCAACAGCAC GGTATCGGGGAGAAATTCGCCCCTTCGTGAAACGACGAACGTGGGCCCTG CAAGGTTCACGGAGGAAGAGGAAGGGCCGCCTTTAGGTATGCATACCACA CTCGAGGAAGTTCCCTCACCACCCGACCACCCGGGAGGTAAACAGCTGAT GCTCTACCAGCCCTTGCCGTTCGGGATGACCGTCCAAGACACGGCGGGTG CTGACGGCGGCGAGTCTGGGGATGGGGGGTCGGCACGTGCGGTCGTGTCC GATGCTATGGGAACGTCGGCTTGGGTGCCGGAAGGCCCACCCTGGCACAT AGCGGTCGCGGATTCGGACGACGGCGCCGAAGACGAACTTCATCCCCTTC CTGAGCCTCTTCATGCGGAGTCGGTGACGCTCGAAACTGCGCTCGACTCC GCGCCGCCGGGCGACAACGGCCTTTCATCAGCACGAGAGGTGTCTCCGGC TCTGGTCCCCTGGGGCGACAGGCGAATCACACAGCCGCATCCGGCCGTGG TTGGCGTGGTGTCTGCTATTATTGCCGGAGCAGTCATCCTGTTGCTATGT CAGTGGCGCGCACGGCGAACGCGTCGTCGGCAACAGGCGCTGGTGAGTCC CCAGGGGCAACTGGAGCGTCCTACCGCGTATTTTTCCGTTACCAGTTCTC CACAGATCAAACAGGTTTTGCACGCAAGGTGGTGACCGAACCGAATCGTT GCGTACCTCACACTGATCTGGCGTTCCGCGAGTGCTTTCGCCTTACCAGA TATGTTATCATTCGGAATTAAGTTTTCCTATGCTACCACACAACCCTAGC TATTGCTTTCGTTTTTTGTACCTTGCTTGTTCACTTGTTGTTTATCCCGT GTTTGCTTTGCCTGCACCCCTTGTCTTCACAGGACCTTGCTCGGCAGGAA GCGCTTCGACGGGTGATCCTCCGGGACGCGGGTCGATCGCGCCAGCGGGA GGTCTCCGACTTCTGGCGTTGGCGGCTGGCGACGGCGGCAGGCGTTGTGA CCGGCCTCCGCGCCCAACAAGAGCGAGCGACGGCGGAGCACGAGGCAGCC CGCGCCGCTGACCGCGAAGCCGCCCAAGAGAGACAAGAAGCGGCGGTGGG GGTGGTGACGGCAGTGGAGACGAGGAGACGTGAGTCGGCCGAGACAGCAC TCGACGAGGCCCGTGAAGCGGCAGCCGCCGACCGGGCGGAGCAGGAAGCC ATTATTCACTCGACGGAGGGGTCCCTGGTGGAGACGCAGCGGGAGTTGCG TGAGACCAGGCAAGGCGTAATGGAGTCCCGGGGCGTTGTTGAGGAGCTGC AGCACCAGCTGAAGAATATCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12053:2531..4003+

>mRNA_Ecto-sp13_S_contig12053.1752.1 ID=mRNA_Ecto-sp13_S_contig12053.1752.1|Name=mRNA_Ecto-sp13_S_contig12053.1752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12053:2531..4003+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTCGCAGCCCAACAGCACGGTATCGGGGAGAAATTCGCCCCTTCG
TGAAACGACGAACGTGGGCCCTGCAAGGTTCACGGAGGAAGAGGAAGGGC
CGCCTTTAGGTATGCATACCACACTCGAGGAAGTTCCCTCACCACCCGAC
CACCCGGGAGGTAAACAGCTGATGCTCTACCAGCCCTTGCCGTTCGGGAT
GACCGTCCAAGACACGGCGGGTGCTGACGGCGGCGAGTCTGGGGATGGGG
GGTCGGCACGTGCGGTCGTGTCCGATGCTATGGGAACGTCGGCTTGGGTG
CCGGAAGGCCCACCCTGGCACATAGCGGTCGCGGATTCGGACGACGGCGC
CGAAGACGAACTTCATCCCCTTCCTGAGCCTCTTCATGCGGAGTCGGTGA
CGCTCGAAACTGCGCTCGACTCCGCGCCGCCGGGCGACAACGGCCTTTCA
TCAGCACGAGAGGTGTCTCCGGCTCTGGTCCCCTGGGGCGACAGGCGAAT
CACACAGCCGCATCCGGCCGTGGTTGGCGTGGTGTCTGCTATTATTGCCG
GAGCAGTCATCCTGTTGCTATGTCAGTGGCGCGCACGGCGAACGCGTCGT
CGGCAACAGGCGCTGGACCTTGCTCGGCAGGAAGCGCTTCGACGGGTGAT
CCTCCGGGACGCGGGTCGATCGCGCCAGCGGGAGGTCTCCGACTTCTGGC
GTTGGCGGCTGGCGACGGCGGCAGGCGTTGTGACCGGCCTCCGCGCCCAA
CAAGAGCGAGCGACGGCGGAGCACGAGGCAGCCCGCGCCGCTGACCGCGA
AGCCGCCCAAGAGAGACAAGAAGCGGCGGTGGGGGTGGTGACGGCAGTGG
AGACGAGGAGACGTGAGTCGGCCGAGACAGCACTCGACGAGGCCCGTGAA
GCGGCAGCCGCCGACCGGGCGGAGCAGGAAGCCATTATTCACTCGACGGA
GGGGTCCCTGGTGGAGACGCAGCGGGAGTTGCGTGAGACCAGGCAAGGCG
TAATGGAGTCCCGGGGCGTTGTTGAGGAGCTGCAGCACCAGCTGAAGAAT
ATCGAG
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