mRNA_Ecto-sp13_S_contig6652.17516.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6652.17516.1
Unique NamemRNA_Ecto-sp13_S_contig6652.17516.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6652.17516.1 vs. uniprot
Match: D7FXT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT8_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.330e-45
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 LTAEALARPAVVLDRSGRVIVVEKHLLAFDEVWPADLPALRPLRLNLRRSCGAGRANGDVGHSDDIARKGEGQSGRGRFGGP 246
            LTAEALARPAVVLDRSGRVI+VEKHLLAFDEVWPADLPALRPL+LNLRRSCGAGRANGDVGHSD+ ARKGEGQSG GRFGGP
Sbjct:   66 LTAEALARPAVVLDRSGRVILVEKHLLAFDEVWPADLPALRPLQLNLRRSCGAGRANGDVGHSDNNARKGEGQSGGGRFGGP 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6652.17516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXT8_ECTSI1.330e-4593.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6652contigEcto-sp13_S_contig6652:7601..8084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463915.586139-CDS-Ecto-sp13_S_contig6652:7600..76721681463915.586139-CDS-Ecto-sp13_S_contig6652:7600..7672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6652 7601..7672 +
1681463915.5958939-CDS-Ecto-sp13_S_contig6652:7909..80831681463915.5958939-CDS-Ecto-sp13_S_contig6652:7909..8083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6652 7910..8083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6652.17516.1prot_Ecto-sp13_S_contig6652.17516.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6652 7601..8083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6652.17516.1

>prot_Ecto-sp13_S_contig6652.17516.1 ID=prot_Ecto-sp13_S_contig6652.17516.1|Name=mRNA_Ecto-sp13_S_contig6652.17516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
LTAEALARPAVVLDRSGRVIVVEKHLLAFDEVWPADLPALRPLRLNLRRS
CGAGRANGDVGHSDDIARKGEGQSGRGRFGGP
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mRNA from alignment at Ecto-sp13_S_contig6652:7601..8084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6652.17516.1 ID=mRNA_Ecto-sp13_S_contig6652.17516.1|Name=mRNA_Ecto-sp13_S_contig6652.17516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6652:7601..8084+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTACTGCGGAAGCTTTGGCGAGGCCGGCGGTTGTCCTTGACCGATCGGG
GAGGGTAATCGTGGTTGAAAAGGTGACAACGAAACGTTGAATTCTGAAGG
AGTGGGGGGATGTTTCGCTGCATACCCCGACAATGAGGGGCAATTCTGAA
GGGGTGGGAGCATGTTTCGCTGCATACCCCGACAATGAGGGGCAACCTTG
CCCGTCAACAGTATCTTTTTATGCTTTTCGTTTGACTCGCTTGACATTTT
CACTCGAAAAACGAACGTTTTCGTACTACAATTTTCGTGGCTTTATGGCG
CTTGCGCAGCACTTGCTGGCCTTTGACGAGGTTTGGCCGGCCGATCTTCC
CGCTCTCCGGCCGCTTCGGCTCAACCTCCGGAGGTCTTGTGGTGCAGGTA
GGGCAAACGGGGACGTTGGCCACAGCGACGACATCGCCAGAAAGGGCGAA
GGCCAAAGTGGCAGGGGGCGGTTTGGAGGACCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6652:7601..8084+

>mRNA_Ecto-sp13_S_contig6652.17516.1 ID=mRNA_Ecto-sp13_S_contig6652.17516.1|Name=mRNA_Ecto-sp13_S_contig6652.17516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6652:7601..8084+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTACTGCGGAAGCTTTGGCGAGGCCGGCGGTTGTCCTTGACCGATCGGG
GAGGGTAATCGTGGTTGAAAAGCACTTGCTGGCCTTTGACGAGGTTTGGC
CGGCCGATCTTCCCGCTCTCCGGCCGCTTCGGCTCAACCTCCGGAGGTCT
TGTGGTGCAGGTAGGGCAAACGGGGACGTTGGCCACAGCGACGACATCGC
CAGAAAGGGCGAAGGCCAAAGTGGCAGGGGGCGGTTTGGAGGACCG
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