mRNA_Ecto-sp13_S_contig12053.1752.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Match: A0A6H5JR78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE) HSP 1 Score: 528 bits (1360), Expect = 2.830e-170 Identity = 298/384 (77.60%), Postives = 314/384 (81.77%), Query Frame = 2
Query: 143 NSTVSGRNSPLRETTNVGPARFTEEEEGPPLGMHTTLEEVPSPPDHPGGKQLMLYQPLPFGMTVQDTAGADGGESGDGGS-------------------------------------ARAVVSDAMGTSAWVPEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLSSAREVSPALVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRRRQQALDLARQEALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQQERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEAREAAAADRAEQEAIIHSTEGSLVETQRELRETRQGVMESRGVVEELQHQLKNIE 1183
N TVSGR+SPL E+ NV PA FTE+EEGPP GMH+T +E+PSPPDHPGGKQL+LYQPLPFGM VQDT GADGGES +GGS ARAVVSDAMGTS WV EGPP HIAV DSDDGAEDE HPL +P H ESVTLET LDSA P DNGLSSAREVSPALV WGDRRITQPHPAVVGVVSAIIAGAV+LLL QWRARRTR R+QAL LARQ+ALRRVILRDAGRSRQREVSDFWRWRLATA GVV LR Q ERA AEHEAARAADREAAQERQEAAVGVVTA+ETRRRESAETALDEAREAAAADRAEQEA++HSTEGSLVETQRELRETRQGV ES+GVVEELQ QLKNIE
Sbjct: 106 NGTVSGRDSPLPESANVDPAAFTEDEEGPPFGMHSTPKEIPSPPDHPGGKQLVLYQPLPFGMIVQDTEGADGGESRNGGSRNPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAVVSDAMGTSNWVLEGPPSHIAVVDSDDGAEDEQHPLTKPPHVESVTLETVLDSAQPDDNGLSSAREVSPALVRWGDRRITQPHPAVVGVVSAIIAGAVVLLLRQWRARRTRLRRQALGLARQDALRRVILRDAGRSRQREVSDFWRWRLATATGVVADLRVQHERAAAEHEAARAADREAAQERQEAAVGVVTAMETRRRESAETALDEAREAAAADRAEQEALVHSTEGSLVETQRELRETRQGVTESQGVVEELQQQLKNIE 489
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Match: D7FTQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ8_ECTSI) HSP 1 Score: 445 bits (1145), Expect = 8.210e-141 Identity = 258/381 (67.72%), Postives = 273/381 (71.65%), Query Frame = 2
Query: 140 PNSTVSGRNSPLRETTNVGPARFTEEEEGPPLGMHTTLEEVPSPPDHPGGKQLMLYQPLPFGMTVQDTAGADGGESGDGGS--------------------------------------------------------------------------ARAVVSDAMGTSAWVPEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLSSAREVSPALVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRRRQQALDLARQEALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQQERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEAREAAAADRAEQEA 1060
PNSTVSGR+SPLRET NVGPA FTEEEEGPP GMHTT EE+PSPPDHPGGK+L+LYQPLPF M V DT GADGGESGDGGS RAVVSDAMGTSAWVPEGPP H AV +SDDGAED+LHP PEPLHAE VTLET LDSA P DNGLSSAREVSPALV W RRI QPHPAVVGVVSAI AGAV+LLLCQWR+RRTR RQQAL L RQ+ALRRVIL+DA RSRQREVS FWRWRLA++ G+V LRAQ ERA AE+EAARA DREAAQ RQEAAVG+VTAVETRRRESAETALDEAREAAAADRAEQEA
Sbjct: 83 PNSTVSGRDSPLRETANVGPAAFTEEEEGPPFGMHTTPEEIPSPPDHPGGKELVLYQPLPFVMIVPDTEGADGGESGDGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRAVVSDAMGTSAWVPEGPPSHTAVVNSDDGAEDKLHPHPEPLHAEPVTLETVLDSAQPDDNGLSSAREVSPALVRWDGRRIAQPHPAVVGVVSAIFAGAVVLLLCQWRSRRTRLRQQALGLPRQDALRRVILKDADRSRQREVSVFWRWRLASSTGIVADLRAQGERAAAENEAARAIDREAAQGRQEAAVGMVTAVETRRRESAETALDEAREAAAADRAEQEA 463
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Match: D7FSR8_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI) HSP 1 Score: 385 bits (988), Expect = 1.140e-118 Identity = 244/416 (58.65%), Postives = 256/416 (61.54%), Query Frame = 2
Query: 137 QPNSTVSGRNSPLRETTNVGPARFTEEEEGPPLGMHTTLEEVPSPPDHPGGKQLMLYQPLPFGMTVQDTAGADGGESGDGG---------------------------------------------------------------------------------------------------------------SARAVVSDAMGTSAWVPEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLSSAREVSPALVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRRRQQALDLARQEALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQQERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEAREAAAADRAE 1051
+PNSTVSGR+SP RET NVGPA FTE EE PP GMHTT E+ P PPDHPGGK+L+LYQPLPF + Q TAGADGGES +GG SARAVVSDA+GTSAWVPEGPP HIA DS+DGA DELHPLPEPLHAESVTLET LDSA DNGL SAREVSPALV WGDRRITQ H AVVGVV AI AGAV+L LCQWR+RRTR RQQAL LARQ ALRRVILRDA R RQREVS FWR RLATA GVVTGLRAQ ERA AEHEA RA DRE AQE+QEAAV VTAVET RRE AETALDE EAAAADR E
Sbjct: 3 KPNSTVSGRDSP-RETANVGPAVFTEGEEAPPFGMHTTPEDRPLPPDHPGGKELVLYQPLPFAVDCQCTAGADGGESREGGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARAVVSDAIGTSAWVPEGPPSHIAGVDSEDGAGDELHPLPEPLHAESVTLETVLDSAQSDDNGLLSAREVSPALVRWGDRRITQKHLAVVGVVPAISAGAVVLFLCQWRSRRTRLRQQALGLARQGALRRVILRDAVRLRQREVSSFWRLRLATATGVVTGLRAQGERAAAEHEATRATDREDAQEQQEAAVAEVTAVETARRELAETALDEKCEAAAADRVE 417
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Match: A0A6H5KS24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS24_9PHAE) HSP 1 Score: 225 bits (573), Expect = 4.580e-63 Identity = 196/511 (38.36%), Postives = 207/511 (40.51%), Query Frame = 2
Query: 407 MGTSAWVPEGPPWHIAVADSDDGAEDELHPLPEPLHAESVTLETALDSAPPGDNGLSSAREVSPA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVPWGDRRITQPHPAVVGVVSAIIAGAVILLLCQWRARRTRRRQQA-----------LDLARQ-----------------------------------------------------EALRRVILRDAGRSRQREVSDFWRWRLATAAGVVTGLRAQQERATAEHEAARAADREAAQERQEAAVGVVTAVETRRRESAETALDEAREAAAADRAEQEAIIHSTEGSLVETQRELRETRQGVMESRGVVEELQHQLKNIE 1183
MGTSAWVPEGPP HIAV DSDDGA DEL+PLPEPLHAESVTLET LDSA NGLSSAREVSPA LV WGDRRITQ H AVVGVV AI AGAV+LLLCQWR+ TR RQQA D +RQ EALRRVI+RDA RSRQREVS FWRWRLATA GVVTGLRAQ ERA EHE RAADREAAQER+EAAVGVVTAVET RRE ET LDE REAAAADRAEQ+A + E + T+ ESRGV+EELQ QLK IE
Sbjct: 1 MGTSAWVPEGPPSHIAVGDSDDGAGDELYPLPEPLHAESVTLETVLDSAQSNGNGLSSAREVSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVCWGDRRITQQHLAVVGVVPAIFAGAVVLLLCQWRSWPTRLRQQAPEALRRVIIRDADRSRQREVSAFWRWRLATATGVVTGLRAQYERAAPEHETDRAADREAAQERREAAVGVEALRRVIIRDADRSRQREVSAFWRWRLATATGVVTGLRAQYERAAPEHETDRAADREAAQERREAAVGVVTAVETARREMGETTLDETREAAAADRAEQQARMEELEAQIHSTE-----------ESRGVLEELQQQLKKIE 500 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12053.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12053.1752.1 >prot_Ecto-sp13_S_contig12053.1752.1 ID=prot_Ecto-sp13_S_contig12053.1752.1|Name=mRNA_Ecto-sp13_S_contig12053.1752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp MCSQPNSTVSGRNSPLRETTNVGPARFTEEEEGPPLGMHTTLEEVPSPPDback to top mRNA from alignment at Ecto-sp13_S_contig12053:2531..4003+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12053.1752.1 ID=mRNA_Ecto-sp13_S_contig12053.1752.1|Name=mRNA_Ecto-sp13_S_contig12053.1752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12053:2531..4003+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12053:2531..4003+ >mRNA_Ecto-sp13_S_contig12053.1752.1 ID=mRNA_Ecto-sp13_S_contig12053.1752.1|Name=mRNA_Ecto-sp13_S_contig12053.1752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12053:2531..4003+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |