mRNA_Ecto-sp13_S_contig6652.17515.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6652.17515.1
Unique NamemRNA_Ecto-sp13_S_contig6652.17515.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6652.17515.1 vs. uniprot
Match: D7FXT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT8_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.620e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:  760 MNTSACAMAEMENEEERNRRGGDNCADCVEHSTRAPQQTRPVRKARP 900
            MNTSAC MAEMENEEERN RGGD+C D VEH TRAPQQT+PVRKA P
Sbjct:    1 MNTSACVMAEMENEEERNGRGGDSCGDGVEHHTRAPQQTQPVRKAPP 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6652.17515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXT8_ECTSI3.620e-1382.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6652contigEcto-sp13_S_contig6652:6647..7548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size902
Hectar predicted targeting categoryother localisation
Exons1
Cds size900
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463915.5585713-CDS-Ecto-sp13_S_contig6652:6646..75461681463915.5585713-CDS-Ecto-sp13_S_contig6652:6646..7546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6652 6647..7546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6652.17515.1prot_Ecto-sp13_S_contig6652.17515.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6652 6647..7546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6652.17515.1

>prot_Ecto-sp13_S_contig6652.17515.1 ID=prot_Ecto-sp13_S_contig6652.17515.1|Name=mRNA_Ecto-sp13_S_contig6652.17515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
IWNASPRDAREKESREAGRGVVRSSPSRHVSAGPENDTSSSNSESSSRPD
STTNYNDSGKVRSGSGSGENSCSTTPPNTDVLHADPGAKSISNSDDKGRS
NFGSCSSWQLRRHFPPDALVPRAQPTYMFARATTKTTTLGAQQATQAQAT
ALARATSSRIFEATEARPSGIATLWSSQAAFATGRPRTSEGGKSTPGTLE
KVRERPHTARTRLNALGVSSTGTLDERVQQLSSTTKQPPENMGRLCPDTD
RNRMNTSACAMAEMENEEERNRRGGDNCADCVEHSTRAPQQTRPVRKARP
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mRNA from alignment at Ecto-sp13_S_contig6652:6647..7548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6652.17515.1 ID=mRNA_Ecto-sp13_S_contig6652.17515.1|Name=mRNA_Ecto-sp13_S_contig6652.17515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=902bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6652:6647..7548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTGGAATGCGTCGCCGAGAGACGCGAGGGAGAAAGAGTCCCGAGAGGC
AGGGCGAGGCGTGGTACGGTCCTCACCAAGTCGACACGTCTCTGCCGGAC
CGGAAAATGACACCAGCAGCAGCAACAGCGAATCCAGCAGCAGACCCGAC
AGCACCACCAACTACAATGATAGTGGCAAAGTCAGGAGCGGCAGCGGCAG
CGGTGAAAACAGTTGCAGCACCACTCCCCCGAATACAGATGTATTACACG
CTGATCCAGGCGCGAAAAGCATCAGCAACAGCGACGATAAAGGTCGCTCG
AATTTCGGCAGTTGTTCTAGCTGGCAGCTGCGCCGACATTTCCCGCCGGA
TGCGCTCGTGCCTCGCGCTCAACCGACGTACATGTTCGCCAGAGCAACGA
CGAAGACAACAACCCTTGGTGCACAACAGGCGACACAAGCACAAGCTACG
GCGCTCGCAAGAGCAACATCCAGTCGTATCTTCGAGGCAACAGAGGCTAG
ACCATCAGGTATTGCTACGTTGTGGTCATCACAAGCAGCCTTCGCAACCG
GCCGGCCTAGAACGTCGGAGGGTGGGAAATCGACACCCGGAACGCTCGAA
AAAGTACGAGAAAGGCCCCACACAGCTAGGACCCGGCTCAACGCCTTAGG
CGTATCTTCAACAGGAACACTCGACGAACGTGTGCAACAGTTATCTTCCA
CCACGAAACAACCTCCGGAAAACATGGGGAGGCTCTGCCCAGATACTGAT
CGAAATCGCATGAACACCAGCGCTTGCGCGATGGCGGAAATGGAGAACGA
AGAGGAAAGAAACCGCCGTGGTGGGGACAACTGTGCGGACTGCGTTGAAC
ACAGCACAAGAGCGCCGCAACAGACACGGCCAGTTCGTAAGGCGCGGCCA
GG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6652:6647..7548+

>mRNA_Ecto-sp13_S_contig6652.17515.1 ID=mRNA_Ecto-sp13_S_contig6652.17515.1|Name=mRNA_Ecto-sp13_S_contig6652.17515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6652:6647..7548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTGGAATGCGTCGCCGAGAGACGCGAGGGAGAAAGAGTCCCGAGAGGC
AGGGCGAGGCGTGGTACGGTCCTCACCAAGTCGACACGTCTCTGCCGGAC
CGGAAAATGACACCAGCAGCAGCAACAGCGAATCCAGCAGCAGACCCGAC
AGCACCACCAACTACAATGATAGTGGCAAAGTCAGGAGCGGCAGCGGCAG
CGGTGAAAACAGTTGCAGCACCACTCCCCCGAATACAGATGTATTACACG
CTGATCCAGGCGCGAAAAGCATCAGCAACAGCGACGATAAAGGTCGCTCG
AATTTCGGCAGTTGTTCTAGCTGGCAGCTGCGCCGACATTTCCCGCCGGA
TGCGCTCGTGCCTCGCGCTCAACCGACGTACATGTTCGCCAGAGCAACGA
CGAAGACAACAACCCTTGGTGCACAACAGGCGACACAAGCACAAGCTACG
GCGCTCGCAAGAGCAACATCCAGTCGTATCTTCGAGGCAACAGAGGCTAG
ACCATCAGGTATTGCTACGTTGTGGTCATCACAAGCAGCCTTCGCAACCG
GCCGGCCTAGAACGTCGGAGGGTGGGAAATCGACACCCGGAACGCTCGAA
AAAGTACGAGAAAGGCCCCACACAGCTAGGACCCGGCTCAACGCCTTAGG
CGTATCTTCAACAGGAACACTCGACGAACGTGTGCAACAGTTATCTTCCA
CCACGAAACAACCTCCGGAAAACATGGGGAGGCTCTGCCCAGATACTGAT
CGAAATCGCATGAACACCAGCGCTTGCGCGATGGCGGAAATGGAGAACGA
AGAGGAAAGAAACCGCCGTGGTGGGGACAACTGTGCGGACTGCGTTGAAC
ACAGCACAAGAGCGCCGCAACAGACACGGCCAGTTCGTAAGGCGCGGCCA
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