prot_Ecto-sp13_S_contig665.17511.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig665.17511.1
Unique Nameprot_Ecto-sp13_S_contig665.17511.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length566
Homology
BLAST of mRNA_Ecto-sp13_S_contig665.17511.1 vs. uniprot
Match: D8LEW8_ECTSI (CDT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW8_ECTSI)

HSP 1 Score: 794 bits (2051), Expect = 6.000e-284
Identity = 473/566 (83.57%), Postives = 485/566 (85.69%), Query Frame = 0
Query:    1 MTKTNMSTRRRAVRVAAAAGAAVGQERGHRSARITETRSNEAAPATAVRSSPRRSKKSAAAGGPQGTPLPTAVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDAAMKMLAALLSPVAAARQDTRPPDAEHDQAPGTPTSSQGVQESSASRRDSGEGHDLDPCPLEAMFLAMEQVLALFRRRRQATLLKQIKPAVEGMCCRSFTRQHLAQIAFVQPDAYKLSSRTDARPTRGGYRLRDIFIEIGSSPPAADEACLDYDTQGARRDPVGKAPATGKGALSGADRXXXXXXXXXXXXNAGGEALSARRRETFLRLLASAKARHCKCGGSGGITDGPGAPRDECSCLPQAPLPDTRPLRADGIGGGSRAAADAGGAVESPSTSQGLERSPVDGRGGGGSVGGDMLPGTFRGECAASGMGGGRVDYDEEGSDTPKNVEALRERLRQKDALSAKDRNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHREARDRVRMLASIVPEWCT 566
            MTKTNMSTR RAVRVAAAAGAAVGQERG  SAR+TETRSNEAAPATAVRSSPRRSKKSAAAGGPQGTPLPTAVSRXXXXXXXXXXXXXXXXX                            XXXXXXXXXX            DGDAAMKMLA LLSPVAAARQDTRPPDA+HDQAPGTP SS+G QESSAS RDSGEGHDLDPCPLEAMFLA+EQVLALFRRRRQATLLKQIKPAVEGMC RSFTRQHLA+IAFVQPDAYKLSSRTDARPTRGGYRL+DIFIE G SPP ADEACLD DTQGARRD VGKAPA GKGA++GADR             AGGEALSARRRE FLRLLASAKARHCKCGGS GI  GP APRDECSCLPQAPLPDTRPLRADGIGGGSRAA DAGGAVESPSTSQGLERSP DGR GGG  GG++LPGTFRG C ASGMGGGRVDYDEEGSD PKNVEALRERLRQKDALSAK+RNKT EEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSH+EARDRVRMLASIVPEWCT
Sbjct:    1 MTKTNMSTRGRAVRVAAAAGAAVGQERGRCSARVTETRSNEAAPATAVRSSPRRSKKSAAAGGPQGTPLPTAVSRXXXXXXXXXXXXXXXXXTPGATAATTIPAVAVRASLQKARNNKSGXXXXXXXXXXDTDNTAGGAA--DGDAAMKMLATLLSPVAAARQDTRPPDAQHDQAPGTPISSRGAQESSASGRDSGEGHDLDPCPLEAMFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTRQHLARIAFVQPDAYKLSSRTDARPTRGGYRLKDIFIETGPSPPPADEACLDDDTQGARRDRVGKAPAAGKGAVAGADRDGRNGGDTGGHSIAGGEALSARRREIFLRLLASAKARHCKCGGSRGIAGGPSAPRDECSCLPQAPLPDTRPLRADGIGGGSRAAPDAGGAVESPSTSQGLERSPGDGRSGGGG-GGNLLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDALSAKERNKTEEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHKEARDRVRMLASIVPEWCT 563          
BLAST of mRNA_Ecto-sp13_S_contig665.17511.1 vs. uniprot
Match: A0A6H5K955_9PHAE (CDT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K955_9PHAE)

HSP 1 Score: 586 bits (1510), Expect = 5.430e-205
Identity = 317/358 (88.55%), Postives = 330/358 (92.18%), Query Frame = 0
Query:  209 MFLAMEQVLALFRRRRQATLLKQIKPAVEGMCCRSFTRQHLAQIAFVQPDAYKLSSRTDARPTRGGYRLRDIFIEIGSSPPAADEACLDYDTQGARRDPVGKAPATGKGALSGADRXXXXXXXXXXXXNAGGEALSARRRETFLRLLASAKARHCKCGGSGGITDGPGAPRDECSCLPQAPLPDTRPLRADGIGGGSRAAADAGGAVESPSTSQGLERSPVDGRGGGGSVGGDMLPGTFRGECAASGMGGGRVDYDEEGSDTPKNVEALRERLRQKDALSAKDRNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHREARDRVRMLASIVPEWCT 566
            MFLA+EQVL LFRRRRQATLLKQIKPAVEGMC RSFTRQHLAQIAFVQPDAYKLSS+TDARPTRGGYRLRDIFIE G SPP ADEACLD DTQGARRD VGKAPA GKGA++GAD XXXXXXXXXX  NAGGEALSARRR  FLRLLASA+ARHCKCGGS GIT+ P APRDECSCLPQAPLPDTRPLRADGI GGSRAAA AGGA ESPSTSQGLERSPVDGR GGG +GG++LPGT RG C ASGM GGRVDYDEEG D PKN+EALRERLRQKDALSAK+RNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVL+EALSSSSKHALS +EARDRVRMLASIVPEWCT
Sbjct:    1 MFLALEQVLTLFRRRRQATLLKQIKPAVEGMCGRSFTRQHLAQIAFVQPDAYKLSSKTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGARRDRVGKAPAAGKGAVAGADXXXXXXXXXXXRSNAGGEALSARRRGIFLRLLASARARHCKCGGSEGITNEPSAPRDECSCLPQAPLPDTRPLRADGISGGSRAAAHAGGAAESPSTSQGLERSPVDGRCGGGGIGGNLLPGTSRGGCVASGMSGGRVDYDEEGPDAPKNLEALRERLRQKDALSAKERNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLMEALSSSSKHALSRKEARDRVRMLASIVPEWCT 358          
BLAST of mRNA_Ecto-sp13_S_contig665.17511.1 vs. uniprot
Match: A0A507DW31_9FUNG (CDT1 domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DW31_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 2.100e-5
Identity = 103/418 (24.64%), Postives = 160/418 (38.28%), Query Frame = 0
Query:  206 LEAMFLAMEQVLALFRRRRQATLLKQIKPAVEGMCCRSFTRQHLAQIAFVQPDAYKLSSRTDARPTRGGYRLRDIFIEIGSS--PPAADEACLDYDTQGARRDPVGKAPATGKGALSGADRXXXXXXXXXXXXNAGGEALSARRRETFLRLLASAKARHCKCGGSGGITD---------GPGAPRDECSCLPQ---APLPDTRPLRADGIGGGSRAAA--------------DAGGAVES----------PSTSQGLERSPVDGRGGGGSVGGDMLPGTFRGECAASGMGGGRVDYDEEGSDT--------------PKN-VEALRERLRQKDALSAK-DRNKTAEEKEADRRRKGNLPAMADAVRSY---FAHAGRTTCSLDVLIEALSSSSKHALSHREARDRVRMLASIVPEWCT 566
            LE MF  +E  +   + R Q  +  +I+ AVE MC R+F  ++LAQI  V P+AYK S          G R+  I I++     P   DE     DT    +  V  +     G+L+G  +            N   + +  RR+E   RL    +  H K   S   T              P+ +   +P+   A +P+ +    D     +R  A              D   A +           P+T     RSP D          D L  T         +    VD D   + T              PK+   AL ER+R ++    + D     ++  A+ RRK  L  + D  ++    +A+A +    L  + ++LS+S   ++S  EAR+ V++LA I PEWCT
Sbjct:  274 LEKMFHGLEYTVMFMKGRDQRCVYHKIRKAVENMCHRNFEMRNLAQIRTVYPEAYKYSM---VLTVEQGVRVASICIDVTEEGKPIDTDEV---PDTPTKNKGMV--SSVIRGGSLAGPMKSAVDSVGMRNSANEASKQMGERRKEFHRRLEMLVRTEHNKFLKSISHTTLSEENHSRLTAWHPKFDLESVPEVVPADMPELKDSAPDFRSSTARERAAEKDDSKSRLSSESDVDPAAQEQQHQPPLPSIPNTPTSTGRSPKD----------DALRRTA--------ISAPMVDDDIPSTPTKPAKEIVMPDRPTKPKSRAAALLERIRDREKKKVEADMYGPRKDTAAEIRRKAMLSRLGDVAQALSFMYANARKDVLGLPYIAQSLSNSLPSSISEVEAREHVKLLAEIAPEWCT 665          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig665.17511.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEW8_ECTSI6.000e-28483.57CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K955_9PHAE5.430e-20588.55CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A507DW31_9FUNG2.100e-524.64CDT1 domain-containing protein n=1 Tax=Powellomyce... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014939CDT1 Geminin-binding domain-likeSMARTSM01075CDT1_2coord: 206..392
e-value: 0.0041
score: 3.1
IPR014939CDT1 Geminin-binding domain-likePFAMPF08839CDT1coord: 206..362
e-value: 8.6E-15
score: 55.5
NoneNo IPR availableGENE3D1.10.10.1420coord: 467..566
e-value: 3.6E-14
score: 54.6
NoneNo IPR availablePANTHERPTHR28637:SF1DNA REPLICATION FACTOR CDT1coord: 475..566
NoneNo IPR availablePANTHERPTHR28637FAMILY NOT NAMEDcoord: 206..391
NoneNo IPR availablePANTHERPTHR28637:SF1DNA REPLICATION FACTOR CDT1coord: 206..391
NoneNo IPR availablePANTHERPTHR28637FAMILY NOT NAMEDcoord: 475..566
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..566
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..19
IPR032054DNA replication factor Cdt1, C-terminalPFAMPF16679CDT1_Ccoord: 477..566
e-value: 2.6E-14
score: 53.4
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 206..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig665contigEcto-sp13_S_contig665:18140..22864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig665.17511.1mRNA_Ecto-sp13_S_contig665.17511.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig665 18140..22864 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig665.17511.1 ID=prot_Ecto-sp13_S_contig665.17511.1|Name=mRNA_Ecto-sp13_S_contig665.17511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=566bp
MTKTNMSTRRRAVRVAAAAGAAVGQERGHRSARITETRSNEAAPATAVRS
SPRRSKKSAAAGGPQGTPLPTAVSRRTTAKSSSSSGGGSGNRAANPGATN
ATTTSAIAARASSQKARNNKSGGGTGSGSGGGDTDNAAGGAPDGDAAMKM
LAALLSPVAAARQDTRPPDAEHDQAPGTPTSSQGVQESSASRRDSGEGHD
LDPCPLEAMFLAMEQVLALFRRRRQATLLKQIKPAVEGMCCRSFTRQHLA
QIAFVQPDAYKLSSRTDARPTRGGYRLRDIFIEIGSSPPAADEACLDYDT
QGARRDPVGKAPATGKGALSGADRGGRSGGDTGGRSNAGGEALSARRRET
FLRLLASAKARHCKCGGSGGITDGPGAPRDECSCLPQAPLPDTRPLRADG
IGGGSRAAADAGGAVESPSTSQGLERSPVDGRGGGGSVGGDMLPGTFRGE
CAASGMGGGRVDYDEEGSDTPKNVEALRERLRQKDALSAKDRNKTAEEKE
ADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHREA
RDRVRMLASIVPEWCT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014939CDT1_Gemini-bd-like
IPR032054Cdt1_C
IPR036390WH_DNA-bd_sf