mRNA_Ecto-sp13_S_contig12050.1751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12050.1751.1
Unique NamemRNA_Ecto-sp13_S_contig12050.1751.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12050.1751.1 vs. uniprot
Match: D8LF96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF96_ECTSI)

HSP 1 Score: 455 bits (1171), Expect = 3.750e-154
Identity = 279/338 (82.54%), Postives = 282/338 (83.43%), Query Frame = 1 
Query:    1 AIFTQEQMDRVVDDLKLRTRETNAKMKRFVSDSEWLTIDQALGETGTYASVLMSRATGGDTGLHIAITLGSLRAAQVMELVLRIAQLEEDFSRKGITARRLTAAEKASLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQARSAES*ARACEIEGREMLPAAQRELRLCEVMCRYLEQCEAIRDREHDILPPLTPEDLDFKADRFTGVLDPKVEGGSGXXXXXXXXXXXXXXXXXSSSQDRVTLSAGANAIMSARMALSIMGLTRSSGGTGRSKGDEGGSDVRRXXXXXXXXXXXXXXXXXXXGSLIAGRARGLTARIAAAQRHAPDERATRSG 1014
            AIFTQEQMDRVVDDLKLRTRETNAK KRFVSDSEWLTIDQ LGETGTYASVLMSRATGGDTGLHIAITLGSLRAAQVMELVLRIAQLEEDFSRKGITARRLTAAEKASLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQ       ARACEIEGREMLP          VMCRYLEQCEAIRDREH+ILPPLT EDLD KADRFTGVLDPK EGGSG                 S SQDRVTLSAGANAIMSARMALSIMG TRSSGGTG SKG      VR XXXXXXXXXXXXXXXX    S IAGRA+GLTARIAAAQR+A DERAT SG
Sbjct:  107 AIFTQEQMDRVVDDLKLRTRETNAKTKRFVSDSEWLTIDQTLGETGTYASVLMSRATGGDTGLHIAITLGSLRAAQVMELVLRIAQLEEDFSRKGITARRLTAAEKASLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQEE-----ARACEIEGREMLPXXXXXXXXXXVMCRYLEQCEAIRDREHEILPPLTLEDLDSKADRFTGVLDPKGEGGSGGIRRQEDSGGH------SGSQDRVTLSAGANAIMSARMALSIMGSTRSSGGTGGSKGXXXXXXVRXXXXXXXXXXXXXXXXX----SSIAGRAKGLTARIAAAQRNASDERATHSG 429
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12050.1751.1 vs. uniprot
Match: A0A6H5L644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L644_9PHAE)

HSP 1 Score: 429 bits (1104), Expect = 5.980e-143
Identity = 293/476 (61.55%), Postives = 297/476 (62.39%), Query Frame = 1 
Query:    1 AIFTQEQMDRVVDDLKLRTRETNAKMKRFVSDSEWLTIDQALGETGTYASVLMSRATGGDTGLHIAITLGSLRAAQV--------------------------------------------------------------------------------MELVLRIAQLEEDFSRKGITARRLTAAEK----------------------------------------ASLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQARSAE--------------S*ARACEIEGREMLPAAQRELRLCEVMCRYLEQCEAIRDREHDILPPLTPEDLDFKADRFTGVLDPKVEGGSGXXXXXXXXXXXXXXXXXSSSQDRVTLSAGANAIMSARMALSIMGLTRSSGGTGRSKGDEGGSDVR-RXXXXXXXXXXXXXXXXXXXGSLIAGRARGLTARIAAAQRHAPDERATRSGSNS 1023
            AIFTQEQMDRVVDDLKLRTRETNAK KRFVSDSEWLTIDQ LGETGTYASVLMSRAT GDTGLHIAITLGSLRAAQV                                                                                MELVLR AQLEEDFSRKGITARRLTAAEK                                        ASLAQLDRV HKANEYRLFGHGLACYFVDRLSDWPALQARSA+                ARACEIEGREMLPAAQRELRLCEVMCRYLEQCEAIRDREH+ILPPLTPEDLD KADRFTGVLDPK EGGSG                 SSSQDRVTLSAGANAIMSARMALSIMG TRSSGGTG SK      DVR      XXXXXXXXXXXXXXXGS IAGR +GLTARI AAQRHA D+RAT SGSNS
Sbjct:  110 AIFTQEQMDRVVDDLKLRTRETNAKTKRFVSDSEWLTIDQTLGETGTYASVLMSRATSGDTGLHIAITLGSLRAAQVFVEEGCDVTILNDDGVSAVAILRQDGGDKETCFRQTKCIYLQWNLTASEMHNMSSKHPKPAMPSNTLHAPRALSDNFDKVMELVLRTAQLEEDFSRKGITARRLTAAEKVSPATYAANVHAPSFLARRLSVHHTPRGAGTSNATALGAQASLAQLDRVAHKANEYRLFGHGLACYFVDRLSDWPALQARSADHVATAHVNQWLCTDEEARACEIEGREMLPAAQRELRLCEVMCRYLEQCEAIRDREHEILPPLTPEDLDSKADRFTGVLDPKGEGGSGGSRCRRRQEDSGGH---SSSQDRVTLSAGANAIMSARMALSIMGATRSSGGTGGSKXXXXXXDVRWEEERGXXXXXXXXXXXXXXXGSSIAGRPKGLTARITAAQRHAFDKRATHSGSNS 582
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12050.1751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF96_ECTSI3.750e-15482.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L644_9PHAE5.980e-14361.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12050contigEcto-sp13_S_contig12050:2..4567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1068
Hectar predicted targeting categoryother localisation
Exons6
Cds size432
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12050.1751.1prot_Ecto-sp13_S_contig12050.1751.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12050 1085..4546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.3996208-UTR-Ecto-sp13_S_contig12050:1..5361681462640.3996208-UTR-Ecto-sp13_S_contig12050:1..536Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12050 2..536 -
1681462640.4089992-UTR-Ecto-sp13_S_contig12050:1004..10841681462640.4089992-UTR-Ecto-sp13_S_contig12050:1004..1084Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12050 1005..1084 -
1681462640.4698012-UTR-Ecto-sp13_S_contig12050:4546..45671681462640.4698012-UTR-Ecto-sp13_S_contig12050:4546..4567Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12050 4547..4567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.4174185-CDS-Ecto-sp13_S_contig12050:1084..10861681462640.4174185-CDS-Ecto-sp13_S_contig12050:1084..1086Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12050 1085..1086 -
1681462640.429088-CDS-Ecto-sp13_S_contig12050:1371..15041681462640.429088-CDS-Ecto-sp13_S_contig12050:1371..1504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12050 1372..1504 -
1681462640.439479-CDS-Ecto-sp13_S_contig12050:2203..22931681462640.439479-CDS-Ecto-sp13_S_contig12050:2203..2293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12050 2204..2293 -
1681462640.4490197-CDS-Ecto-sp13_S_contig12050:3870..39781681462640.4490197-CDS-Ecto-sp13_S_contig12050:3870..3978Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12050 3871..3978 -
1681462640.4593225-CDS-Ecto-sp13_S_contig12050:4447..45461681462640.4593225-CDS-Ecto-sp13_S_contig12050:4447..4546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12050 4448..4546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12050.1751.1

>prot_Ecto-sp13_S_contig12050.1751.1 ID=prot_Ecto-sp13_S_contig12050.1751.1|Name=mRNA_Ecto-sp13_S_contig12050.1751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
MDRVVDDLKLRTRETNAKMKRFVSDSEWLTIDQALGETGTYASVLMSRAT
GGDTGLHIAITLGSLRAAQVMELVLRIAQLEEDFSRKGITARRLTAAEKA
SLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQARSAES*
back to top

mRNA from alignment at Ecto-sp13_S_contig12050:2..4567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12050.1751.1 ID=mRNA_Ecto-sp13_S_contig12050.1751.1|Name=mRNA_Ecto-sp13_S_contig12050.1751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4566bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12050:2..4567- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAATATTTACCCAGGAGCAAATGGACCGCGTCGTCGACGACCTTAAGCT
CCGCACGAGGGAGACAAACGCGAAAATGAAGCGCTTCGTGAGCGACTCGG
AGTGGCTCACCATCGACCAGGTAAGTATAAGAACAATCTTTGTCATTGCA
TCGACGGTGACGTGTTTGTGACCGAACTATCTCATTATTTCCTCAATTTT
CTCACGATGATTGCTGTGTTCTGGTAGTGTTGTAGCCTGTAATTGCCAGC
TGTCGCACATCGTTTCTTCGGACTACGAAAGCGTCGTTTGTACAAGGACC
AGGCCGACAAAGTCAGTTGTGTATTGGGTCGGCGACGATGAAACATCTCT
CCAATCAACCCTTACTGCTGGTCACCTCAAACAACGTCCGACCCTCTGCC
GAAAGCGGTTTGTGTTGACAGCTGATCAACAATAAAAACCATGTCTACCG
TGCTATCTCATCACCCTGGCAAAGGCCTACCGGGTAACCGGGGGGGAAAA
CGCTCCCGGGAATATCAGCGCGAAATGACCGATCAAGTTAAAAAAGGATA
CACAAACGAAGCACACCGTAAATATCGCATCGGGAAAAGGCACTAGGTGA
GACCGGGACGTACGCCAGCGTGCTCATGTCAAGGGCGACGGGTGGAGACA
CGGGGCTACATATCGCCATCACCCTCGGGAGCTTACGGGCTGCCCAGGTC
AGTGTGGTTGTGTGTGTGTGTGTTTTTTTTATTAGCATCGACCGCGCTAA
CCGGCTGACCAATGAAAAGATGTCAGTCTTAGTGCGGTTGAAAACACAAA
ACTGTGTGTGTGTGTGTGTGTGTTTGTTTTTTGTTCTTCACTTCGAATCA
GCGCTCACAGTACCAGTACCGTTTACTCCAACCCGTGGTCACACAGAGAG
CCCCTCTCTACCCTCCCCTCCTGCGGTACTTTGCTTTCGATTTTTAATGC
GAGAAGAGGTCAGCACTCTCTTCCCTTTGTGTACACACGAACCATTTAGC
ACTATCCACTAGGCCAGGAGCGGAAGCGAGAGAAAAGCTCACTTTGCAAG
AAAAGCTCGCTTACGTCGGGATTCGAAACCCTGACCTGTTTCCTAGAAGG
TTTCGCGGGTACCAGCTAGACCACCGGGGCGAGTGCGTGGAGTAGAAGAA
ACAACTGAGCCCTCCCCGCCCTCCCACACCCGTGTGTGTGTTCGTGTGTG
AGCGGAGGGCGAACGATATTCTTGATGAATTTTTCGCTTTCTACACCCTC
CCCCGTCTCACCGCTGCTCCAAGAGCACTCCCAGACCCCGCTCCCCGTCC
GGTGCATATGTACAAGAACCAGCATGACAAAAAGCTGAGGAATCTATTTC
AACACCGGGGACGTGAGGGAGGGGAGGCATTGGACCTCCATCGGCAAAAC
TTTGCCCATGTTGTTTACGACGGCGCACGTTGAGAGAAGGGCGTAAAGAA
GTCCCAACCGTTCACATCCAGCCCTGGCCATGCTGACGAACGATGTTCAC
ACCTACATGTCCGCTGGTTGCTCGTACGAAGGTTGTTCGTGCACTCATCA
TTTGGTTGCGGTGCTGCTCTGCCGTGTGGGTTGTCTGTGTGTTTGATTGT
TGTTAAGTCTGCGGCGTTGCGTGGTGTTGCTGTCGGGGGCGCAAGCCAAG
CAGGTCTTCGTGGAGGAGGGGTGCGACGTGACTATCCTCAACGACGACGG
AGTGTCCGCGGTCGCCATCCTGAGGCAAGACGGGGGGGACAACGATTTTA
TTAGTTTCGACAAACCAAGTGCATCTAAAATGGAACCTGACCGCGTCCGA
GATGTAGTCAGGTTGCAGTCGTCGCGCGGCACATGGCACCACCACCTTGT
AGAGACGATGGCAAAACAATAATTGCCAGGTAACCCGTTGGAAAATCCGG
GAAGGTTCTACTCAAGTAGACGTTAAACTCAAACGAGTGTCCTCACTAGA
AGAAGTTGCAGGCTACTGCTGTTATTGTCAAACTCAGATTTGGGCTGTCT
TGGTTCGTCTGCTTACATTTCATGTGCTACGCAAACACATGATCTCAACT
ATATCAGTCGCATTATTTCATCAAGCATCTCCCTCAAGACCAAGCTGTCT
GCCCCCTGTGTGTAGTCTCTCGGCGACCGAATTTCCTGAGGTTGATGAAA
AAACTAGACCCTGCCATTGGTGTCTCAGCAACATGTCGTCGAAAAACCCG
AAGCCAGCCATGCCTTCCAATACACCACATTTTCGCACCACGCACCACGC
GTTCTCAGCGACAACTTCGACAAGGTGATGGAGCTGGTGCTTCGCATCGC
CCAGCTCGAGGAGGACTTCTCGCGCAAGGGCATCACGGCCCGCCGGCTGA
CTGCAGCAGAAAAGGTAAGGGGGAGATGCATCGATCGATCGGTCGATCGA
CACCGCCGCAAGTCTCTCCTGCAACGCGTATGCTGCAAAAGAACACGCCC
CTTTCTTCTTATCGAGGAGGCTTTCAGCCCTTGATACTTCGAGAGGGGGG
GAGGACGTCCAACGCTACAGCAGTAGGTGCACAGTTGTGTTGTGCGGGTG
GTTGTGGGTGCTCGACCGTGCACCACACCGTATCACACTGCAGCAATAGT
AGGTGTACGGGTGTTACAAGGGTTTAGTTAGGTGCTTGGTCGCGTGCCAA
GCCTTTTCCTCGAGGGTGTTACCGCCGACTCCGAGTCCTGGAAGACACAG
CGCGTCCCCTGCGGGACACCCGTACACTCAGTATCCTCTCACCGTGTGAT
GTGGGCTTCAGAGCAGCGAGCCTTTGCTGCGCCGCAGGGAACTGATCGTG
GTTGTTTGGTGTTACGCTGGTTGTGCCGGAAAACCTTGCGTGCATGAACG
AAACGCCTGCATTTGAACACAGTGTGGACAGAGGGATATCGTCCTCGGGA
GCCAGATGTAGGGGCAGATTTGACCCACAGGCCACCTCCACAACAACAAT
AGCAGTAGTGCTGTAGTAAAATTCTTGCGTCTGTGACCGTCGCCCCCCGC
GTTGGCGTCGTCATGATTGATGCTGCTACTGCTGTCTTTTTTGCTCTGCG
TCGCGTCCACCAGGCGTCCCTAGCGCAGCTCGATCGGGTGGTCCACAAGG
CCAACGAGTACAGGCTCTTCGGGCACGGCTTGGCTTGCTACTTCGTGGAC
AGGCTGTCAGACTGGCCCGCTCTGCAGGCGAGATCCGCTGAATCATGTTG
TTACCGCTCTTGTCAACCACAGTAGTGATGTCTAAAGTGTGTACGGATCT
GCATTGTACGTTCCTTCCTCAAGCCGGAGGAGGAAAAGTTTGGTCCGGTG
TTGGTCAGTTGTCTTCGGGGAAACGGGTCGAGGGTGGCCATGTCAATCAC
AGTAGTAATGTTTCCAAGGGAGAACCAGTGTTATGTGCCCCCGTCGCCTA
AGGTCGCCCGTCACGATCGTCACCTTTCTTTCTGTTCGCCTGCCAACGAA
ACACACCCGGCGGGTCGAATCGAGCAGGAAGAGGCGCGAGCGTGCGAGAT
AGAGGGACGGGAGATGCTCCCCGCGGCGCAACGAGAGCTGCGCCTTTGCG
AGGTCATGTGCAGGTGAAAAAGGCAGCAAGCTGCCCAGACGGTAACAACA
GCAGAGCAAAGAAAAGCGCGTCATGTCTAACGATGAGGCCGCCCGATGTT
CCGAGGAAAGGATGCCGTCGTTTTCTTCACGTCCGTCCGTCCGTCTCTCC
CTCCCCTCGTCCCCTATTTTACCGACCAGCTCGCTGCCGTTGCTACGGAG
CGTCGGCTTCATGTCCCAAGTTGTTGCATGATCGGCTTGTCGTGCAGGGT
TGTGCTATCCTGATTTAAGGGTTTGATTTGACAAGTGTAAGGGTCTCGGA
TCGATCGCCGGGAAGATGTCTGCTCGAAGGGCCCCGTTCACCATACACTA
GACATAGAAGATGTACCGCCAGACGGTCTATCACACACGCTTCATACCAC
CCTGTCCTTTTTTCCATCTGGTTTGTTTGGTCGATCGATATACTCGCCCC
CCTCCCCCCCCCCCCCCCGACTATTCTGTAGGTACCTCGAGCAATGCGAG
GCCATCCGAGATCGAGAACACGACATTCTGCCGCCGCTCACCCCGGAAGA
TCTCGACTTCAAGGCCGACCGTTTCACCGGCGTCCTCGACCCGAAGGTAG
AAGGAGGAAGCGGTGGCAGCCGCCGCCGCCGCCACCACCGCCGCCAGGAG
GACTCCGGAGGCCACAGCAGCAGCCAGGATCGAGTCACCCTCTCGGCGGG
CGCCAACGCCATCATGTCGGCCCGGATGGCCCTTTCCATCATGGGGCTGA
CGCGGTCCTCCGGCGGTACAGGGAGGAGCAAGGGAGACGAGGGCGGAAGC
GACGTTCGACGGGAGGAGGAGCGAGGGCAGCACCACCAGCAGAGTGTGGC
GGCGGCCGCGGCGGCGGCGGGTTCGTTGATAGCAGGCAGGGCGAGAGGGC
TGACGGCCCGAATAGCAGCGGCGCAGAGGCACGCCCCCGACGAAAGAGCC
ACACGCAGCGGCAGCAACAGCAACAACACTGCTACTATCAAAACATCGTC
GGGGACGGGGGAGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12050:2..4567-

>mRNA_Ecto-sp13_S_contig12050.1751.1 ID=mRNA_Ecto-sp13_S_contig12050.1751.1|Name=mRNA_Ecto-sp13_S_contig12050.1751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12050:2..4567- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGCGTCGTCGACGACCTTAAGCTCCGCACGAGGGAGACAAACGC
GAAAATGAAGCGCTTCGTGAGCGACTCGGAGTGGCTCACCATCGACCAGG
CACTAGGTGAGACCGGGACGTACGCCAGCGTGCTCATGTCAAGGGCGACG
GGTGGAGACACGGGGCTACATATCGCCATCACCCTCGGGAGCTTACGGGC
TGCCCAGGTGATGGAGCTGGTGCTTCGCATCGCCCAGCTCGAGGAGGACT
TCTCGCGCAAGGGCATCACGGCCCGCCGGCTGACTGCAGCAGAAAAGGCG
TCCCTAGCGCAGCTCGATCGGGTGGTCCACAAGGCCAACGAGTACAGGCT
CTTCGGGCACGGCTTGGCTTGCTACTTCGTGGACAGGCTGTCAGACTGGC
CCGCTCTGCAGGCGAGATCCGCTGAATCATAG
back to top