mRNA_Ecto-sp13_S_contig66413.17500.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66413.17500.1
Unique NamemRNA_Ecto-sp13_S_contig66413.17500.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66413.17500.1 vs. uniprot
Match: A0A6H5L825_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L825_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.390e-15
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:   16 RHYYSKAVQANPYHAVAHFNLGLLLHDEDIDTAIAH 123
            RHYYSKAVQANPYHAVAHFNLGLLLHDEDIDTAI H
Sbjct:   87 RHYYSKAVQANPYHAVAHFNLGLLLHDEDIDTAIEH 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66413.17500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L825_9PHAE8.390e-1597.22Methyltransf_11 domain-containing protein n=2 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66413contigEcto-sp13_S_contig66413:468..599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score76.6
Seed ortholog evalue3.1e-12
Seed eggNOG ortholog2880.D8LBV8
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Cds size132
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463914.1089578-CDS-Ecto-sp13_S_contig66413:467..5991681463914.1089578-CDS-Ecto-sp13_S_contig66413:467..599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66413 468..599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66413.17500.1prot_Ecto-sp13_S_contig66413.17500.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66413 468..599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66413.17500.1

>prot_Ecto-sp13_S_contig66413.17500.1 ID=prot_Ecto-sp13_S_contig66413.17500.1|Name=mRNA_Ecto-sp13_S_contig66413.17500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
HVLVVRHYYSKAVQANPYHAVAHFNLGLLLHDEDIDTAIAHYQV
back to top

mRNA from alignment at Ecto-sp13_S_contig66413:468..599-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66413.17500.1 ID=mRNA_Ecto-sp13_S_contig66413.17500.1|Name=mRNA_Ecto-sp13_S_contig66413.17500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66413:468..599- (Ectocarpus species13 EcNAP12_S_4_19m)
CATGTGCTCGTCGTCAGGCACTACTACTCCAAGGCGGTGCAGGCTAATCC
CTACCACGCCGTGGCGCACTTCAATCTGGGCCTGCTACTGCACGACGAGG
ATATTGACACGGCCATTGCGCACTATCAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66413:468..599-

>mRNA_Ecto-sp13_S_contig66413.17500.1 ID=mRNA_Ecto-sp13_S_contig66413.17500.1|Name=mRNA_Ecto-sp13_S_contig66413.17500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66413:468..599- (Ectocarpus species13 EcNAP12_S_4_19m)
CATGTGCTCGTCGTCAGGCACTACTACTCCAAGGCGGTGCAGGCTAATCC
CTACCACGCCGTGGCGCACTTCAATCTGGGCCTGCTACTGCACGACGAGG
ATATTGACACGGCCATTGCGCACTATCAGGTG
back to top