mRNA_Ecto-sp13_S_contig66397.17498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66397.17498.1
Unique NamemRNA_Ecto-sp13_S_contig66397.17498.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.820e-11
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:    2 LYIRAIAIGEKALGPDHPDLAGFLNNRAHLLEIQGKYD 115
            LY+RAI +GEK LGPDHPDLA +LNN+A LL  QGKYD
Sbjct:   16 LYLRAIEVGEKKLGPDHPDLATWLNNQAVLLRKQGKYD 53
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: UPI001E5A9FEC (tetratricopeptide repeat protein n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=UPI001E5A9FEC)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-10
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 2 
Query:    5 YIRAIAIGEKALGPDHPDLAGFLNNRAHLLEIQGKYDEAEPL 130
            Y+RAIAI EK+L PDHPDLA  L+N A L E QG+Y+EAEPL
Sbjct:    1 YLRAIAIVEKSLPPDHPDLASSLSNLAALYESQGRYEEAEPL 42
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: UPI001E2DE804 (tetratricopeptide repeat protein n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=UPI001E2DE804)

HSP 1 Score: 62.8 bits (151), Expect = 1.370e-10
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 2 
Query:    5 YIRAIAIGEKALGPDHPDLAGFLNNRAHLLEIQGKYDEAEPL 130
            Y+RAIAI EK+L PDHPDLA  LNN A L + QG+Y+EAEPL
Sbjct:    1 YLRAIAIDEKSLPPDHPDLARHLNNLAGLYDSQGRYEEAEPL 42
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 9.260e-9
Identity = 29/37 (78.38%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:   20 AIGEKALGPDHPDLAGFLNNRAHLLEIQGKYDEAEPL 130
            AI EK LGPDHP LA  LNNRA LLE QGKY EAEPL
Sbjct:   84 AIKEKVLGPDHPSLATTLNNRAGLLEAQGKYVEAEPL 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.460e-8
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 2 
Query:    2 LYIRAIAIGEKALGPDHPDLAGFLNNRAHLLEIQGKYDEAE 124
            LY RAI I E ALGP+H  +A  LNNRA LL +QGKYD+AE
Sbjct:  590 LYDRAIRIWEAALGPEHSQVATALNNRARLLRVQGKYDDAE 630
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: A0A7S3NNH9_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNH9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.910e-8
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:   23 IGEKALGPDHPDLAGFLNNRAHLLEIQGKYDEAEPL 130
            IGEK LGP+HPDLA  LNN A LLE QGKYDEA+ L
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLL 37
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: A0A7S3K3F8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3F8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.910e-8
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:   23 IGEKALGPDHPDLAGFLNNRAHLLEIQGKYDEAEPL 130
            IGEK LGP+HPDLA  LNN A LLE QGKYDEA+ L
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLL 37
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.720e-8
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:    2 LYIRAIAIGEKALGPDHPDLAGFLNNRAHLLEIQGK 109
            L++RAI IGEK LGPDHPDLA  LNNRA LL  QG+
Sbjct:  260 LFLRAIEIGEKTLGPDHPDLATRLNNRAELLRAQGE 295
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: A0A7S3NQ03_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ03_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.570e-8
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:   23 IGEKALGPDHPDLAGFLNNRAHLLEIQGKYDEAEPL 130
            IGEK LGP+HPDLA  LNN A LLE QGKYDEA+ L
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLL 37
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Match: A0A7S3NN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NN98_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.050e-7
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:   23 IGEKALGPDHPDLAGFLNNRAHLLEIQGKYDEAEPL 130
            IGEK LGP+HPDLA  LNN A LLE QGKYDEA+ L
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLL 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66397.17498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLM3_ECTSI4.820e-1173.68Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
UPI001E5A9FEC1.010e-1069.05tetratricopeptide repeat protein n=1 Tax=Planktoth... [more]
UPI001E2DE8041.370e-1069.05tetratricopeptide repeat protein n=1 Tax=Planktoth... [more]
A0A6H5K0C4_9PHAE9.260e-978.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6Q8_9PHAE3.460e-865.85NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3NNH9_9STRA3.910e-875.00Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3K3F8_9STRA3.910e-875.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6H5JUC1_9PHAE4.720e-872.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7S3NQ03_9STRA9.570e-875.00Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3NN98_9STRA1.050e-775.00Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66397contigEcto-sp13_S_contig66397:37..719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463913.9753585-CDS-Ecto-sp13_S_contig66397:36..1041681463913.9753585-CDS-Ecto-sp13_S_contig66397:36..104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66397 37..104 -
1681463913.995012-CDS-Ecto-sp13_S_contig66397:616..7191681463913.995012-CDS-Ecto-sp13_S_contig66397:616..719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66397 617..719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66397.17498.1prot_Ecto-sp13_S_contig66397.17498.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66397 37..719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66397.17498.1

>prot_Ecto-sp13_S_contig66397.17498.1 ID=prot_Ecto-sp13_S_contig66397.17498.1|Name=mRNA_Ecto-sp13_S_contig66397.17498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
VVHSSNRYRGEGIGSRSSRPCWLSQQPGTFVGDSGQVRRGGAVVHSSNRD
QREGAGS
back to top

mRNA from alignment at Ecto-sp13_S_contig66397:37..719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66397.17498.1 ID=mRNA_Ecto-sp13_S_contig66397.17498.1|Name=mRNA_Ecto-sp13_S_contig66397.17498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66397:37..719- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGTACATTCGAGCAATCGCTATCGGGGAGAAGGCATTGGGTCCAGATC
ATCCAGACCTTGCTGGCTTTCTCAACAACCGGGCACATTTGTTGGAGATT
CAGGTGAGAGTCGAATCAGTGGTGTGTGGGAATGGGCAATACGGGTGCAC
ATTTCTCGGTGAGAGGTATGTGCATTTTGTCGTATGGACCACTGACTTCA
CGCCCACCCTCACATCTTGCGTCGTGAGGACAGTAAGTATGCTGCGGCCG
GTTGACTTGATGGGCTGTCACAGGCTGTACTCGAAAAGGTGCTGAGTCCG
GAAAAACCCGATGTGACCCAGTCGCTCAACGATCAAGGTGTGGTTGTTGA
CCATTCGTTCCTCCGCACTATACGCTACACGTACGGGTGGTGACACTCTC
TTCCTCTTCCCTGCCCGTCCAGAGCAAAGTTTGCTGAGACGGTACCACTA
TGTGTGCGGCGTGAGGCGACACAGGGCAAGGTTCTCGGCCGTGAGTTTCC
CAAGCTAGGCTGCATTGCTCAACAACCAGACAGTGGTGCTGACTACTGCT
TCTTCCCAGCGAAGCCAACTAGCCTTGACGTTCCTATCCCGTCTCCCGTT
CATTTTCTATGTAAGGGCAAGTACGACGAGGCGGAGCCGTTGTACATTCG
AGCAATCGCGATCAGAGAGAAGGCGCTGGGTCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66397:37..719-

>mRNA_Ecto-sp13_S_contig66397.17498.1 ID=mRNA_Ecto-sp13_S_contig66397.17498.1|Name=mRNA_Ecto-sp13_S_contig66397.17498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66397:37..719- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGTACATTCGAGCAATCGCTATCGGGGAGAAGGCATTGGGTCCAGATC
ATCCAGACCTTGCTGGCTTTCTCAACAACCGGGCACATTTGTTGGAGATT
CAGGGCAAGTACGACGAGGCGGAGCCGTTGTACATTCGAGCAATCGCGAT
CAGAGAGAAGGCGCTGGGTCC
back to top