mRNA_Ecto-sp13_S_contig12048.1749.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12048.1749.1
Unique NamemRNA_Ecto-sp13_S_contig12048.1749.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12048.1749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12048contigEcto-sp13_S_contig12048:1240..2352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_001600.1
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.1321282-UTR-Ecto-sp13_S_contig12048:1239..13771681462640.1321282-UTR-Ecto-sp13_S_contig12048:1239..1377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12048 1240..1377 -
1681462640.181879-UTR-Ecto-sp13_S_contig12048:2325..23521681462640.181879-UTR-Ecto-sp13_S_contig12048:2325..2352Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12048 2326..2352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.1473598-CDS-Ecto-sp13_S_contig12048:1377..14131681462640.1473598-CDS-Ecto-sp13_S_contig12048:1377..1413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12048 1378..1413 -
1681462640.156541-CDS-Ecto-sp13_S_contig12048:1786..19061681462640.156541-CDS-Ecto-sp13_S_contig12048:1786..1906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12048 1787..1906 -
1681462640.1686327-CDS-Ecto-sp13_S_contig12048:2292..23251681462640.1686327-CDS-Ecto-sp13_S_contig12048:2292..2325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12048 2293..2325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12048.1749.1prot_Ecto-sp13_S_contig12048.1749.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12048 1378..2325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12048.1749.1

>prot_Ecto-sp13_S_contig12048.1749.1 ID=prot_Ecto-sp13_S_contig12048.1749.1|Name=mRNA_Ecto-sp13_S_contig12048.1749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MHMRKNWCRTCTKRSRTRRGEYNEKQAMWCVRSGEKGTVVQEDGEAGQHH
QVSVMRHANLKK*
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mRNA from alignment at Ecto-sp13_S_contig12048:1240..2352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12048.1749.1 ID=mRNA_Ecto-sp13_S_contig12048.1749.1|Name=mRNA_Ecto-sp13_S_contig12048.1749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12048:1240..2352- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGGGCACGTCCCCCGAAGGGTCCGCATGCACATGCGGAAAAACTGGTG
CAGAACCTGCGTATGAGAGGTGATATGTATATTTTACTCTCGATTTTTAC
CAATCCTGCTTCGGGCGATGACGCAACGCTGTCAAGAAATGCAGAATTTT
CCTCTCGGGCGTGGCTTATCGTTATAGGAATGTTGTTTTCTCGATCTCTA
CTGCATCACTCCAAGTGTGTGCTAATGTTCTCCACCGGTGCTGACCCACA
TAGTACTCCAGGTTAACGAGAGAGACGTAGAACAAATCGTATATACCGAG
GCACGCTAGACGTGATGAAGCACACCCCATTCCGTCGTGACCGAAATATT
TTGACATCATTCGAGAGAGTTTGACATCCCGTGGCAAGCATATCATTCAA
TCTACCCCCATCCTCAATCACGGGCCTAACCACCAATTGTCGTCAGACCA
AACGAAGCCGAACTCGGCGGGGAGAATATAATGAGAAACAAGCAATGTGG
TGTGTAAGAAGCGGTGAAAAGGGGACTGTTGTACAGGAGGATGGCGAGGC
CGGTCAACACCATCAGGTTCGGTTGAGGCATTCCGCCGGAGACGTATCCA
CTGTTGATGCGCATAGAATCTTGTAGATCTGCAGCCGACTCGAAACCAGC
GATGAAAACGCCAATGGGCACGGTTTATGCTGTCAGCTCGCTGCCCTGCC
ACTGTCTCAGCGCCTTTCCTTCTCTTGCCGATCAGTTTTGTCAGTTGGTC
TATTGCAGGGGGTGCGGGTGCCGCCGCCAGCCCGTTGGTCCGTTCTACAA
GAATCTGCTACAGCAAACAAAATATTTCTATCTAGATGCAGGGGTGTGGT
CTTGAATGCACTGGTGACATTGGTGCAGCGTACACATTCCAATGACCCGT
ACAGAAACGGAGAATATCGACAACGTTTTCGTGGGACAGGTGTCAGTTAT
GCGTCACGCAAACTTGAAGAAATAAGCGGAGCGGACGGCGAGTGCAAGGT
CGTTTGGACATCTTGTCCAGCCTGCTGCAGCACCTGTGCTTGAGTGCAAG
AACTGCTTGGCGCCGTTTACGGTGACGCTTATTCCGCCTACCCAAGTCTC
ACTTCACTCGACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12048:1240..2352-

>mRNA_Ecto-sp13_S_contig12048.1749.1 ID=mRNA_Ecto-sp13_S_contig12048.1749.1|Name=mRNA_Ecto-sp13_S_contig12048.1749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12048:1240..2352- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACATGCGGAAAAACTGGTGCAGAACCTGCACCAAACGAAGCCGAAC
TCGGCGGGGAGAATATAATGAGAAACAAGCAATGTGGTGTGTAAGAAGCG
GTGAAAAGGGGACTGTTGTACAGGAGGATGGCGAGGCCGGTCAACACCAT
CAGGTGTCAGTTATGCGTCACGCAAACTTGAAGAAATAA
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