mRNA_Ecto-sp13_S_contig6626.17485.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6626.17485.1
Unique NamemRNA_Ecto-sp13_S_contig6626.17485.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: A0A6H5K655_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K655_9PHAE)

HSP 1 Score: 568 bits (1463), Expect = 1.300e-192
Identity = 286/350 (81.71%), Postives = 300/350 (85.71%), Query Frame = 2 
Query: 1742 VDHPDKDSDALIDARMASISDFEGEVVAWSFGDGPDVLRNHDLDFELEVPDLGRNVPALIGLCSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLRFPLGDEASMESGSDGTSDDDDDGVAYRAYLASKFTVVTREDASSEWVPIDGTIKQAEGGVFVLEVAVPHFCDFARLQDISVPPGCMEIVPLPQLKGKPRRSHFHFVNLGEENLVAHCWGAVKKTGFWNFFRINLGAGATSGNAEFEGHRQPEDTGNGTVYSVQVPRSDPTNPKKTEVCWVSLGTESVTVAWTSQRRPQNARHRIAQVWGSSPMQHKHVMVFGPLLDIDTCQVANLRVDDNESFGKLVKSKVE 2791
            +DHPD+DSDALI+ RMA+ISDFEGEVVAWSFGD PDVLRNHDLDF+LEVPDLGRNVP LIGLCSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLR PLGDEASMESGSDG SDD    VAYRAYLASKFTVVTREDASS WVPIDGTI+QAEGGVFVLEVAVPHFCDFA  Q ISVP GCMEIVPLP+LKGKPRRSHFHFVN GEENLVAHC GAV+KTGFW+FF+INLGAGATS N                   V+ P S  TNP K+EVC V LGTESVTVAWTSQR PQNARHRI QVWG SPMQHKH MVFGPL  IDTCQV+NL+VDD ESFGKLVKSKVE
Sbjct:    1 MDHPDEDSDALINTRMAAISDFEGEVVAWSFGDSPDVLRNHDLDFDLEVPDLGRNVPTLIGLCSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLRLPLGDEASMESGSDGASDDXXXDVAYRAYLASKFTVVTREDASSGWVPIDGTIQQAEGGVFVLEVAVPHFCDFALSQGISVPRGCMEIVPLPKLKGKPRRSHFHFVNQGEENLVAHCRGAVEKTGFWDFFKINLGAGATSAN-------------------VEDPAS--TNPNKSEVCRVFLGTESVTVAWTSQRYPQNARHRIPQVWGFSPMQHKHAMVFGPLSGIDTCQVSNLKVDDGESFGKLVKSKVE 329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: D8LHD4_ECTSI (Putative leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD4_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 7.490e-112
Identity = 198/346 (57.23%), Postives = 240/346 (69.36%), Query Frame = 2 
Query: 1766 DALIDARMASISDFEGEVVAWSFGDGPDVLRNHDLDFELEVPDLGRNVPALIGLCSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLRFPLGDEASMESGSDGTSDDDDDGVAYRAYLASKFTVVTREDASSEWVPIDGTIKQAEGGVFVLEVAVPHFCDFARLQDISVPPGCMEIVPLPQLKGKPRRSHFHFVNLGEENLVAHCWGAVKKTGFWNFFRINLGAGATSGNAEFEGHRQPEDTGNGTVYSVQVPRSDPTNPKKTEVCWVSLGTESVTVAWTSQRRPQ-----NARHRIAQVWGSSPMQHKHVMVFGPLLDIDTCQVANLRVDDNESFGKLVKSKV 2788
            D  +D  MA IS F+G V+AWSFG  P VLR++  +FELEVP LGRNVPALIGL SSSAEVVDG++CLLHPVV CLAR+GE FDP L LRFP+GD  SMESGSD  SDD +  V YRAYL S F+ +TR+ ASSEWVP+DGTI+Q + G+FVLEV V HFCDFA  Q I V  G +E+V LPQLK K RRSH+HFVNLG ENLV HCWG  +K GF   FR+ LG G   G+AE E  R   D     VY V VP   P +  + E C V  G ES+TVA+T+Q+  +      + H + QVWG+  MQHKH M+FG L +  +  V NL+V+D  + G+LV+SKV
Sbjct:  430 DTTVDGGMAEISGFDGYVMAWSFGQHPAVLRSNGFEFELEVPRLGRNVPALIGLRSSSAEVVDGEKCLLHPVVTCLARSGEVFDPPLCLRFPVGDVNSMESGSDCGSDDAE--VTYRAYLESTFSTLTRKHASSEWVPVDGTIEQTDEGIFVLEVQVSHFCDFALKQAIKVDSGGVELVKLPQLKHKSRRSHYHFVNLGTENLVVHCWGVTRKRGFLESFRLKLGFGLNGGDAEVEATRTLVDAPGTGVYKVDVP-GGPVDDPRNEACLVVNGFESLTVAYTTQKTVRAGTLFGSTHELVQVWGTRHMQHKHAMIFGILPE--SALVPNLKVEDGVNVGELVRSKV 770
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: A0A6H5KIZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIZ7_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 2.480e-84
Identity = 168/344 (48.84%), Postives = 215/344 (62.50%), Query Frame = 2 
Query: 1781 ARMASISDFEGEVVAWSFGDGPDVLRNHDLDFELEV-PDLGRNVPALIGL--CSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLRFPLGDEASMESGS-DGTSDDDDDGVAYRAYLASKFTVVTREDASSEWVPIDGTIKQAEGGV-FVLEVAVPHFCDFARLQDISVPPGCMEIVPLPQLKGKPRRSHFHFVNLGEENLVAHCWGAVKKTGFWNFFRINLGAGATSGNAEFEGHRQPEDTGNGTVYSVQVPRSDPTNPKKTEVCWVSLGTESVTVAWTSQRRPQNAR----HRIAQVWGSSPMQHKHVMVFGPLLDIDTCQVANLRVDDNESFGKLVKSK 2785
            ++M+S+ DF+G+VVAWSFG+  +VLR+ D +FELEV P L +N PAL+GL  CS SAE V+G+Q LLH V+ CL R GE FDP L LRFP+GDE SMESGS DG+ DD ++  AYRA+L S F+ V R+DASSEWVPI G I + +GG  F LEV + HFCDF   Q I V  G  E++ LP+     R++H+HF NLG + LV H WGA +K  F N  R N       G+   E  R   D      Y V VP  +  +  K +VC   +  E  TVAWT+Q R   +     H++ QVWGS+PM   HV+V G +    T  +ANLRVDD E  G+LV SK
Sbjct:  226 SQMSSLQDFKGDVVAWSFGNRAEVLRSPDSEFELEVQPGLNKNYPALVGLGLCSGSAEYVNGEQYLLHCVLTCLTRAGEKFDPPLLLRFPVGDEDSMESGSLDGSQDDAEE--AYRAHLQSTFSAVKRDDASSEWVPIGGDIVRMKGGRDFFLEVKISHFCDFGLSQAIDVEVGYTELIELPKKMFSSRKTHYHFANLGTKPLVFHVWGAGRKEVFVNVVRANAAVDLAGGSVGAEMERTLVDVPGSGPYEVHVP-GEAGSGSKPQVCRKFVDLEKPTVAWTTQERISPSSGVEGHQLVQVWGSTPMLSGHVLVVGAMAPDATPAIANLRVDDGEDVGRLVWSK 566
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.030e-16
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:  680 MASTDRDALNDLFEATSGASWVTNLNWGTDAPLSEWHGVEVNEEGRVVKLVLDSNGLEGV 859
            MASTDRDAL  L+ AT G  W TN NW T APLS+WHGV VN++GRVV L L  N L+G+
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQGI 60
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.620e-16
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 2 
Query:  680 MASTDRDALNDLFEATSGASWVTNLNWGTDAPLSEWHGVEVNEEGRVVKLVLDSNGLEGVTPESPAALSELEALRL 907
            M++ DR AL  LF +T GA+W TN NW TDA L+ W GVEVN+EGRVV+L+L  N L G  PE+   L+EL  L +
Sbjct:    1 MSTMDRAALIALFRSTDGANWKTNSNWDTDAELATWAGVEVNDEGRVVQLILPDNNLHGPIPEALGTLNELTHLSM 76
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.710e-15
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:  680 MASTDRDALNDLFEATSGASWVTNLNWGTDAPLSEWHGVEVNEEGRVVKLVLDSNGLEGVTPESPAALSELEALR 904
            MA TDRDAL  L+ AT G +W  + NW TDA L  WHGV+VN++GRVVKL L  N LEG   E PA L +L  L+
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEG---EIPATLGQLANLQ 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 9.630e-15
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:  683 ASTDRDALNDLFEATSGASWVTNLNWGTDAPLSEWHGVEVNEEGRVVKLVLDSNGLEGVTPESPAALSELEAL 901
            ASTDRDAL  LF +T+GA+W  N NW TDA L  WHGV+VNE GRVVKL L  + L G  PE+  AL ELE L
Sbjct:  375 ASTDRDALVALFISTNGATWTCNDNWDTDAELGTWHGVDVNERGRVVKLQLGLHNLRGPIPEALVALDELEVL 447
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.720e-15
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:  683 ASTDRDALNDLFEATSGASWVTNLNWGTDAPLSEWHGVEVNEEGRVVKLVLDSNGLEGVTPESPAALSELEAL 901
            ASTDRDAL  LF +T+GA+W  N NW TDA L  WHGV+VNE GRVVKL L  + L G  PE+  AL ELE L
Sbjct:  401 ASTDRDALVALFISTNGANWTCNDNWDTDAELGTWHGVDVNERGRVVKLQLGLHNLRGPIPEALVALDELEVL 473
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.310e-14
Identity = 43/72 (59.72%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:  680 MASTDRDALNDLFEATSGASWVTNLNWGTDAPLSEWHGVEVNEEGRVVKLVLDSNGLEGVTPESPAALSELE 895
            MA TDR AL  L+ AT GA W  N NW T A LS+WHGVEVN +GRVVKL L  N L G  P+   ALS LE
Sbjct:   71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSRLE 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.340e-14
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 2 
Query:  680 MASTDRDALNDLFEATSGASWVTNLNWGTDAPLSEWHGVEVNEEGRVVKLVLDSNGLEGV 859
            MA TDRDAL  ++ AT G  W T+ NW TD+ L  WHGV VN++GRVVKL L  N LEGV
Sbjct:    1 MAQTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEGV 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6626.17485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K655_9PHAE1.300e-19281.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHD4_ECTSI7.490e-11257.23Putative leucine rich repeat protein n=1 Tax=Ectoc... [more]
A0A6H5KIZ7_9PHAE2.480e-8448.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX36_9PHAE1.030e-1663.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF65_ECTSI3.620e-1653.95Hypothetical leucine-rich repeat protein n=1 Tax=E... [more]
A0A6H5JK91_9PHAE6.710e-1556.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS8_ECTSI9.630e-1561.64Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBQ0_9PHAE9.720e-1561.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK2_ECTSI1.310e-1459.72Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K3C2_9PHAE1.340e-1460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6626contigEcto-sp13_S_contig6626:2..8099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score376.3
Seed ortholog evalue3.1e-101
Seed eggNOG ortholog2880.D8LHD4
Model size3106
Hectar predicted targeting categoryother localisation
Exons13
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
Cds size2115
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463912.6072395-UTR-Ecto-sp13_S_contig6626:1..6801681463912.6072395-UTR-Ecto-sp13_S_contig6626:1..680Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6626 2..680 +
1681463912.7770963-UTR-Ecto-sp13_S_contig6626:7787..80991681463912.7770963-UTR-Ecto-sp13_S_contig6626:7787..8099Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6626 7788..8099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463912.6296673-CDS-Ecto-sp13_S_contig6626:680..8551681463912.6296673-CDS-Ecto-sp13_S_contig6626:680..855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 681..855 +
1681463912.650879-CDS-Ecto-sp13_S_contig6626:1450..15221681463912.650879-CDS-Ecto-sp13_S_contig6626:1450..1522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 1451..1522 +
1681463912.6627123-CDS-Ecto-sp13_S_contig6626:1729..18011681463912.6627123-CDS-Ecto-sp13_S_contig6626:1729..1801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 1730..1801 +
1681463912.6743731-CDS-Ecto-sp13_S_contig6626:1947..20191681463912.6743731-CDS-Ecto-sp13_S_contig6626:1947..2019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 1948..2019 +
1681463912.6861885-CDS-Ecto-sp13_S_contig6626:2148..22201681463912.6861885-CDS-Ecto-sp13_S_contig6626:2148..2220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 2149..2220 +
1681463912.6969712-CDS-Ecto-sp13_S_contig6626:3056..31281681463912.6969712-CDS-Ecto-sp13_S_contig6626:3056..3128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 3057..3128 +
1681463912.7057626-CDS-Ecto-sp13_S_contig6626:4079..41511681463912.7057626-CDS-Ecto-sp13_S_contig6626:4079..4151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 4080..4151 +
1681463912.7180448-CDS-Ecto-sp13_S_contig6626:4588..46601681463912.7180448-CDS-Ecto-sp13_S_contig6626:4588..4660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 4589..4660 +
1681463912.726818-CDS-Ecto-sp13_S_contig6626:5295..53671681463912.726818-CDS-Ecto-sp13_S_contig6626:5295..5367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 5296..5367 +
1681463912.735626-CDS-Ecto-sp13_S_contig6626:5511..55831681463912.735626-CDS-Ecto-sp13_S_contig6626:5511..5583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 5512..5583 +
1681463912.7448554-CDS-Ecto-sp13_S_contig6626:5722..58901681463912.7448554-CDS-Ecto-sp13_S_contig6626:5722..5890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 5723..5890 +
1681463912.7552426-CDS-Ecto-sp13_S_contig6626:6068..62001681463912.7552426-CDS-Ecto-sp13_S_contig6626:6068..6200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 6069..6200 +
1681463912.766419-CDS-Ecto-sp13_S_contig6626:6795..77871681463912.766419-CDS-Ecto-sp13_S_contig6626:6795..7787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6626 6796..7787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6626.17485.1prot_Ecto-sp13_S_contig6626.17485.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6626 681..7787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6626.17485.1

>prot_Ecto-sp13_S_contig6626.17485.1 ID=prot_Ecto-sp13_S_contig6626.17485.1|Name=mRNA_Ecto-sp13_S_contig6626.17485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=705bp
MASTDRDALNDLFEATSGASWVTNLNWGTDAPLSEWHGVEVNEEGRVVKL
VLDSNGLEGVTPESPAALSELEALRLIDNKLTGQIPAALCALRELKVLVL
YKNQISGCIPAELGKLSNLEHLNLSDNSLTGSIPMELRALSELHTLQLYC
NMLTGSIPKELFTCSKLETLWLNRNKLTGSIPLEIGKATALTSVKLHRNE
LSGHIPNELAALIKLEELLLANNRLSGFVPAQVVKLQSISSLDLDNNPLS
GPVPSAIELRMLRDSLFLPGDDDEAWSDEMVKKQRFKSLKSAKSSIRSSV
TSIVSACSTDMSATSGTTSSPTSSASTSTKQEEVVASSTVKQNKPPRIPQ
ARATVDHPDKDSDALIDARMASISDFEGEVVAWSFGDGPDVLRNHDLDFE
LEVPDLGRNVPALIGLCSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLR
LRFPLGDEASMESGSDGTSDDDDDGVAYRAYLASKFTVVTREDASSEWVP
IDGTIKQAEGGVFVLEVAVPHFCDFARLQDISVPPGCMEIVPLPQLKGKP
RRSHFHFVNLGEENLVAHCWGAVKKTGFWNFFRINLGAGATSGNAEFEGH
RQPEDTGNGTVYSVQVPRSDPTNPKKTEVCWVSLGTESVTVAWTSQRRPQ
NARHRIAQVWGSSPMQHKHVMVFGPLLDIDTCQVANLRVDDNESFGKLVK
SKVE*
back to top

mRNA from alignment at Ecto-sp13_S_contig6626:2..8099+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6626.17485.1 ID=mRNA_Ecto-sp13_S_contig6626.17485.1|Name=mRNA_Ecto-sp13_S_contig6626.17485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8098bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6626:2..8099+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCGGCGTGCTTCGTCCCGGCTTTGCAGGGATGCGAGGTCAATTGTCTA
ACGACTACGGCATGCACGGCTATTAGTACCCCCCGCCCCCCCCCCGCCCA
GGTTGGCAACATGTGTCGTTTTTCCCCCACCTCACCCCAAGGAAGCCTGA
GGATCCCGACCAGGACCTATCGGTACTAGCTTTCTTGTTCCAGGGTGTCA
ACACCGTAGCCATGTTTGCAACTTGAGACATGAGAGAGTCACGCCCTTTG
TTGTGCCCATGTATCTCCCACTCGGTTCTGCCTACCAAGGTTAGGAGCAG
GGGGCTCGACGTACTAACATTATTGCCGGAGATTTGGTGCTGCCCATGAA
CAAGTCGATGGAGCAGTCATGTTTACGTACGTCTGGCGGAGTGTGGCTGG
ACTACGTGGGGACGGGAAAATAGTGCGTTTCTCGTCTTGCTCTACCAAGA
AGGGCTGCCTCCCTACAAAAACGGGGAACTGTATCGCGTTACTCACGGGG
TTGACCCGGGCGCGAGAAACTTCGCAACAAATCTTGTCACGAGCAAAATG
TCGATGCACTTACTTCGGCAGAACTTTTCCAGTGTGGTGCCTAACGAAGT
AGCGTTGGCCGGTGTAGACTATGGATTCTCAAACTGATTTCCTCATCCCT
GCGCCCTGCCCGCAGATTCTCTTTGAAAAATGGCCTCAACGGACCGTGAC
GCACTGAATGACCTGTTTGAGGCGACCAGCGGGGCTAGTTGGGTGACCAA
TCTCAACTGGGGCACCGACGCTCCACTTTCGGAATGGCATGGGGTTGAGG
TGAACGAGGAGGGCCGCGTGGTAAAGCTTGTTCTGGACAGCAACGGCCTT
GAAGGTACTCGCGAACTTGTTTTAGGATCTTGTCCAACCAACCACCCCTG
CGGCGTAGTGAAAATGTGGCAACGTATCATAGCAGGCTCCTTGGCGCACC
CCTATACACTCACGGGTGTGGTGTTCGGCGGTCGATGCCCATTGTTTGGG
GGGCTAGAAAAATTCTCAAGCTTGTCTTCAGCAGATTGTTTCGTGGCCAC
CTCTTCTGAATGGTTCTGATGCGTCGACGGACCAACAGAGAGTCCTGGGT
GATGGGTTCGGTTTACCATAGTCGACGTAGTTGCGGTGCGTGCTGATGTA
CCTCCCATGTTTCTCACGGCCGTCATTCCTTTGAAAATTCACATGTCTGC
GATGAACTCAATCCTACACCCAGGGTGAACCAGCCGCGCACAGCCATCGT
TTTTTGTGTCAGGACATCTTGTACATGTTACCAGTGTCAGGTGTTCAAGG
TTTTGTCTAGAAAAATATGCTACATCTAGACTAGCGCACTTGCAGTCGCG
TGGAGTTCGTGTCTCGCCGATGCGTGGGGAAGAATATGTTTTGTAGAAGC
TGCAAGCTCGATCGCGGTGCAGTTGCTTGTCGACGTGCTCCTTGTGCAGG
GGTCACCCCGGAGTCACCTGCAGCTCTCAGCGAGCTGGAGGCGCTTCGGC
TCATCGACAACAAGCTCACGGGTGACGTATTTTTATTGATGACATCAGGT
CTGGTCTGTGCAAACATACCATTGCAGCAGAATCAACGGTAGTGATGAAG
CTGTTCTGGTGAAGGATGGAAATAGAGATTCCTACATGACTTGTTTTACC
GATGCAAAATGAGCCCTTGCGAGGTTTCGAAGCCCCGTGTCATAATGTTT
GTTTTCTTGTTCTCTGATTTTCTCTCAGGGCAAATTCCAGCGGCTTTGTG
TGCCCTCAGGGAGCTGAAGGTTCTTGTGCTGTACAAAAACCAGATCAGCG
GTGAGAGAGAGGATGGACTAACGGAGATTTTGTTGGCAAAGGATGCCGCC
CGTCGATTCCTTGACAGGGCATGACGGCCAACAACGTATTGAATTGATTG
GCGCATGGCTTTCTTGTAACCACCCCGGTAATGGCTTCGTGTGCAGGGTG
CATCCCAGCGGAGCTAGGAAAACTTTCTAATCTGGAGCATCTTAACCTTT
CGGACAACAGCCTTACCGGTGAGAGGGATCAAACGTGCTTATTTGTTGTT
GTGTAGAAACATTTTTCTTACTGAGCACTACAATTTCCGTCACGCGACAA
CAGCATGCCTTACGAGACCTGCTATTTGTGTTGTGCTGCTTGAACAGGGT
CCATCCCCATGGAGCTAAGAGCTCTAAGTGAGCTGCATACGCTTCAGCTC
TACTGCAACATGCTTACGGGTGAGACACGTACCAAGCATAACTAACGGTC
CCTAGACTGAATAGACAAAATGCCCTGCCGACGCGCTGGCGAGACCCGAC
GTGTTCTTGCAGGAGAAACGTCATCGTTGAGACTATCACGAACTTTGCTG
TGCGGATGCAGCTTGTTTTTCCGCGCTGTCGAAGTGTTTCATTGGACTTT
TATAGGTACAATGCTTTGTACAGGTGTGCAGCCATCGAGAAGACACAAAC
ACACGTGGAAAACCATATGGAAATGTGTCCCATGGCTGGTGGGGACAATC
TCCGACACTAATGACACTATTGCTTAACCACCAATGCGGCACCATGTGCA
GCCCATGGGCACTTCATGAATTGCCCATGAGTCTGCCCATGAGCGGCCCA
TCGGGCGGCCCATCGGGCGGCCCATGAACTGCCCACGTAGTCCCCAGCGT
GGTCACTTCAACCTAGAACTCGCCACAGCATATCAGCCTGGAACTTGACC
ATCGGCATATCAATCAAGAACTTTGCCACCCAGAGGCAACCTAGCACGTG
GCGTGGGGTTAGGGTTTAGGGTTAGCGCTAGGTTCTTCAGTCGTTATAAT
GCCCGTTTCTGAGCGGACAATCTATTGTTTAGGAGTACATTGGTTCCGGA
TGAAGGGCACTCATTGGCCGCGTATGAGATTGTCATGTTCTACCCATGCG
CATGGGCAGCCCATGGGGCACCCATGGGGCACCCATGGGCGGTTTAGCAA
AAATTGAGATAGTGTGGGAGACCCGGTGGGGAGGACTTTCCATTCCATGT
TCTCGAAAGCACAATTGTTCAGTTTGACCAAAACCACTCTTGCACGGATG
TGTAGGAAGCATTCCGAAGGAGCTATTTACCTGTAGCAAGCTGGAGACAC
TTTGGCTCAACCGCAACAAACTAACCGGTGAGTGGGGTAGGGCTACTGCG
TTCTGCATCCCTGAGTAATAGATTAACAGGGTTGCGTAGGAGGCTGCACA
GCCACAAGGGTATTTTGCGTGCGTCGAGCGCAAGGTAAACTATTAAATTG
ATAGATTGCACGTTGCGGTAGGGGGGGCGTGATCAACCTTGCCCATACTT
CCGGGTTAGATATTATTCGCATGTTTGGATTGCGCGATGAAATGTGTACA
CGAATGAAGAATGGGTTGCCTATGCTACCGTGACGAAATTTCTAAGGGGG
GGTGATGATGACGTGTAACATCTTTGGAAAGAAAATAAACGAAGGAACAT
TGGAAGCGTGTTGCTCGCAGGAAAGGACACAGCGCCTCTCCACCAGGATA
TGGACGGACAAACTTGTCCATTTGGTCCAAATGTTTAGAAATTTATGTTG
TCGCGTTTCGAAACATGTGGATACACTTTGAACGTTTTGATCAGCGGGGG
CTCGGAAAAAAAATCTGCCAAGTCTTTTTAGAGTTCTGGTCGTGTTGTTG
AGTTCTCCGTCGAGCAAATTGTTTCTTTCTGCCATCTCAGCCGCTCTCGG
CCCTCCTCTCGAGCCCTGACAGCGCAGTACTTCTTTGTTCTCGGAGTTCC
GATTTCTCCGTCTGTAAGTCTGTCTGTCGCCCCCCTTCTCTCTGTCTGCC
TCTCTCGATGGATACGCTTGGCCATCGCTGTTCCACCAATCTTTCTACTC
CAGCTGCCGTCTATTGGAAGCGAGGTCGTGTGTTGATCCCCCTCGGAGTC
ATCCCGATTCTCGCAGGCAAAATACCGGCATCAGCTTCCCTCTTTCTCGA
CGGCCACAAGTGTCAGCCTTCAATCGGCTCCCCTACTGTTGTAGTCTTCG
ACCCATCCATGTTTCGTCGCCACCTCTTCACTGCTTTATTTTTCATGCGC
TCGTTCCGGGTTTGCTTGTTGGCTGAAGGTTCCATTCCGCTCGAGATAGG
AAAGGCCACAGCTTTGACATCCGTCAAACTCCACAGAAACGAGCTCAGCG
GTGAGTCGCAAAGGCAACTTGTCATGTCATATTCCACACCAAAACAGAAG
CCACAAGCCCGCACACGGAGTAGGTGTTTTCACACCAAGACACGTGTTTG
GACGCATTATTTACCATGTAATCTCAAGGATACGTGGCGCCGATTGTCAA
AGAGTAAGAAAGTCTAGCTTTATCTCAGACTCCTGTAGAACTCCTTTGCG
TAGTTCCTTAGGAACATGAATAAGCACTGAAGAAATATTGTGAGACGTGA
TCGCTCGTGTCACGGAGGGGGTTTGGTTCGCGAACATTGGGTTACTCACT
GCATTGCCCATCCAGCCCAGAGTTGAAGCAGGACACAACATGTCATCATA
TTTCAGTAGTTTCGAGCGACGGAGATCGCTTTTCAAGAGGCATCATGGCA
ACACCATTTTGGACATTTTGTTGTGCTGCTGATGCAGGACATATCCCCAA
TGAGCTGGCGGCTCTGATAAAGCTGGAAGAGCTCTTGCTAGCCAACAATC
GGCTTAGTGGTGAGGACGTGGCGACAGTGTTGCATGGTTTGTTCTGCAGG
GCAATCTCGAATATTACTGTAGCACAAACCACTCTTTGAAAAGGGCGAAC
ACTCCAAACACTACATAGCAACGCTTCCCAATACGGTGTGTTTTATAAAG
CTAAAGCGCCTTCCGTTAGCCGAGATCTTGGATCCTGCAATAGGATCGGT
GCATAGAACGCACAGCCTACGCCTGGGATATGACATGGTTTGCAAACGCG
GTGTTTGTTGATCTGTGTGTATGTACTTGAACGTTTGCAGATACGCTCGC
CGCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCTATCTTTCGAACGTGT
GGTGGGCGGGTTGCAAGGAACGTGCCTTCTCCTCTCTCCCCCTCCTCCTC
TTCTAGTGCAACAAGTACCCGGACGAAATTCCATGCTTCCCGGCTGCGGT
GGCCTGAATCCGTTCGGATCCTGCCCATGGTCACCGATACCGCTGGAGTT
GAAAGAAGCGTTGAACGGAATTGTCCGTGCCCACCCGGGGGTCAAATCGT
TCCTTCTTGATAAGACTAGACCAGCTCCCAACAAGCCTCTCGCTTCAACT
TCGTATTCCTATGAACCTCCGAGCTTTGCGAATTGTTCTCGCAGGGTTCG
TGCCGGCACAGGTGGTGAAGCTCCAAAGCATTTCGTCTCTGGACCTCGAT
AACAATCCGCTCAGCGGTAAGGACCGTCAAGAATCCGGGATGTCGATGGT
GGGCGCGTCGCTCGTGTTCACTTGCCTTTCTTGGCCGTTGGCCACAAATC
CGCACCCTGTTTCCTCGAGTTTGGTTCAAACAGCATTCCATCCCTACCCG
CGATTTGCAGGTCCGGTGCCATCTGCGATTGAGCTGAGGATGCTTCGCGA
TTCTCTGTTTCTCCCGGGTGACGACGACGAAGGTTTGTGGCGCATTCGGG
TCTACCCTCCTGAGACGAGAAGGGTAGTCGTGTCCGCGTACAAGTGAAAT
GTGTACGATCCGATTGAGCCTCAAGGACGCCTATTGCTTTGTTCCGCTCT
CTTTGGGCGACGCCGTCGCAGCTTGGTCCGACGAAATGGTCAAGAAACAG
CGCTTCAAGAGTCTCAAGAGCGCGAAGTCCTCAATCAGGTCCTCCGTCAC
AAGTATTGTGTCGGCATGCTCGACCGATATGTCTGCAACCTCGGGCACGA
CGTCTTCACCCACGAGCTCGGCGTCTACATCAACTAAACGTGAGACTTCC
CGAACTCGGGTACATGTAATTTCTTCCCTTCTGACGATGTGTATCATCAG
CTATCCTTCTTGTTGGTAGTTTTGTGCCATCAGCTTTGGACCAAATGCAA
TGTGACGCTTCGAGGGAAATGTGTGCTTTGCCAATGCACCTTTCCGCCCA
ATCCGACCACCGCGTAGAAGAAGAGGTGGTCGCATCCAGCACGGTGAAGC
AAAACAAGCCACCGCGCATACCCCAAGCAAGGGCGACTGTGGACCATCCG
GACAAAGACTCGGACGCACTGATCGACGCGCGGATGGCATCCATTTCAGG
TACGTCGTTGCGGGACATCCCACGCACGCCATCGCTCCGTAAGCGAGGTT
GAGATGTGGCTCACTTGTAACAGTAGTGGTCCCAGGGTAGTGCCGGTACG
ACCCAGCCGATTCCTCCAGCGTTATAGCTGCCAACTTGAGATTTACCTTT
CTCTGGTACCAAGTAAAGGTCCCTGAAAAGTGGTGAATAGCTGTTCTCCA
GCGGAGGTATTTCGCTCTTGCTGTAAAGTGGCCAGGAAATGCCAAGCGTG
GCTGACTTTGGTTAGCCTTGCTACTGTAGGTTGAAAGGGGAGAGTGAGCC
TCAGAGGCACGCTTTCATCCTCCAGGTGGTCACAGGAGATGGGGAATCTT
TCTTTATAAACATCTTCAGACCCCGAGAACATTGTTCATAGGGTCTCGGA
TCTCCACGGTTGTATGTGCGTCACTACCACCACTGCTGTAGGAAGATACC
TAATTCCTGGTTTCCATAAACCCGCATCAGAATGTGAAACAATTTTGAAG
ATTCCATCCGTGCCAGGCTATTTCAACGGCATTTTACCGGCACTATTCCG
GATCACTACTGTACTGACCTTTGGTGCTCTCGTGTACTTCGCAGATTTCG
AGGGTGAAGTGGTGGCATGGTCTTTTGGAGATGGTCCGGATGTGCTTCGC
AATCATGATTTAGATTTTGAGCTCGAGGTGCCCGACCTGGGGAGAAACGT
CCCTGCCCTGATTGGCCTGTGCTCAAGCTCAGCTGAAGTGGTGGACGGGA
AGCAATGCCTTCTTCATCCCGTCGTGAGATGCCTCGCCCGGAACGGGGAA
AGCTTCGACCCCAATCTCCGTCTGCGGTTTCCCCTGGGAGACGAGGCCTC
CATGGAATCGGGTTCCGACGGTACCAGTGATGACGATGATGATGGCGTTG
CGTACCGCGCTTACCTTGCGTCCAAGTTTACTGTGGTGACGCGAGAAGAC
GCCAGTTCAGAGTGGGTCCCGATTGACGGAACTATCAAACAAGCGGAGGG
GGGGGTGTTTGTTTTGGAAGTAGCTGTGCCTCACTTTTGTGATTTCGCTC
GTTTGCAAGACATCAGTGTTCCTCCCGGCTGCATGGAAATCGTCCCACTG
CCACAGCTAAAAGGGAAACCCAGGCGGTCGCACTTCCACTTCGTGAATCT
AGGCGAGGAGAACCTTGTTGCTCACTGTTGGGGTGCTGTTAAGAAGACGG
GCTTTTGGAACTTTTTCAGGATCAACCTCGGAGCGGGTGCAACGTCGGGG
AACGCCGAGTTCGAGGGACACCGACAGCCCGAAGACACTGGTAACGGTAC
GGTTTACTCGGTGCAGGTGCCTCGTAGCGATCCTACGAATCCGAAGAAGA
CCGAGGTTTGTTGGGTTTCCCTTGGCACGGAGTCAGTGACGGTGGCATGG
ACATCGCAACGACGCCCTCAAAATGCTAGACACCGGATAGCGCAAGTGTG
GGGCTCCAGCCCCATGCAGCATAAACACGTCATGGTGTTCGGCCCCTTGT
TGGATATCGACACGTGTCAGGTGGCAAACCTGAGGGTAGATGACAACGAA
TCCTTCGGAAAACTTGTGAAGTCAAAGGTGGAATGAAACGCGCGCAAGGA
CAGAACGCATATGTCGGTCGCCCATCAATGAGAGGCAACCTGTCCCCCCC
ATGGAGGATACACTGCCTTTTCAATCCCAAGAAGCGCGGTAATATGGAAG
TACAAACCAACTATTCGATGCGGGTGAGTTGTCCCAGCGGTAGCTGTGGC
CTTGGAGGATCCGAATGTATTGGGAAAATGTAGGAGTGTGCATGGGTTTG
GCAGGTAGTGACTGCTTGGCGAGACAGAATATGTCAGCTCCGGAGTACAA
TATACCCGATGACAGTCGCTAAAACGTAAGCCGTCACGAGTAACATGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6626:2..8099+

>mRNA_Ecto-sp13_S_contig6626.17485.1 ID=mRNA_Ecto-sp13_S_contig6626.17485.1|Name=mRNA_Ecto-sp13_S_contig6626.17485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2115bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6626:2..8099+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCAACGGACCGTGACGCACTGAATGACCTGTTTGAGGCGACCAG
CGGGGCTAGTTGGGTGACCAATCTCAACTGGGGCACCGACGCTCCACTTT
CGGAATGGCATGGGGTTGAGGTGAACGAGGAGGGCCGCGTGGTAAAGCTT
GTTCTGGACAGCAACGGCCTTGAAGGGGTCACCCCGGAGTCACCTGCAGC
TCTCAGCGAGCTGGAGGCGCTTCGGCTCATCGACAACAAGCTCACGGGGC
AAATTCCAGCGGCTTTGTGTGCCCTCAGGGAGCTGAAGGTTCTTGTGCTG
TACAAAAACCAGATCAGCGGGTGCATCCCAGCGGAGCTAGGAAAACTTTC
TAATCTGGAGCATCTTAACCTTTCGGACAACAGCCTTACCGGGTCCATCC
CCATGGAGCTAAGAGCTCTAAGTGAGCTGCATACGCTTCAGCTCTACTGC
AACATGCTTACGGGAAGCATTCCGAAGGAGCTATTTACCTGTAGCAAGCT
GGAGACACTTTGGCTCAACCGCAACAAACTAACCGGTTCCATTCCGCTCG
AGATAGGAAAGGCCACAGCTTTGACATCCGTCAAACTCCACAGAAACGAG
CTCAGCGGACATATCCCCAATGAGCTGGCGGCTCTGATAAAGCTGGAAGA
GCTCTTGCTAGCCAACAATCGGCTTAGTGGGTTCGTGCCGGCACAGGTGG
TGAAGCTCCAAAGCATTTCGTCTCTGGACCTCGATAACAATCCGCTCAGC
GGTCCGGTGCCATCTGCGATTGAGCTGAGGATGCTTCGCGATTCTCTGTT
TCTCCCGGGTGACGACGACGAAGCTTGGTCCGACGAAATGGTCAAGAAAC
AGCGCTTCAAGAGTCTCAAGAGCGCGAAGTCCTCAATCAGGTCCTCCGTC
ACAAGTATTGTGTCGGCATGCTCGACCGATATGTCTGCAACCTCGGGCAC
GACGTCTTCACCCACGAGCTCGGCGTCTACATCAACTAAACAAGAAGAGG
TGGTCGCATCCAGCACGGTGAAGCAAAACAAGCCACCGCGCATACCCCAA
GCAAGGGCGACTGTGGACCATCCGGACAAAGACTCGGACGCACTGATCGA
CGCGCGGATGGCATCCATTTCAGATTTCGAGGGTGAAGTGGTGGCATGGT
CTTTTGGAGATGGTCCGGATGTGCTTCGCAATCATGATTTAGATTTTGAG
CTCGAGGTGCCCGACCTGGGGAGAAACGTCCCTGCCCTGATTGGCCTGTG
CTCAAGCTCAGCTGAAGTGGTGGACGGGAAGCAATGCCTTCTTCATCCCG
TCGTGAGATGCCTCGCCCGGAACGGGGAAAGCTTCGACCCCAATCTCCGT
CTGCGGTTTCCCCTGGGAGACGAGGCCTCCATGGAATCGGGTTCCGACGG
TACCAGTGATGACGATGATGATGGCGTTGCGTACCGCGCTTACCTTGCGT
CCAAGTTTACTGTGGTGACGCGAGAAGACGCCAGTTCAGAGTGGGTCCCG
ATTGACGGAACTATCAAACAAGCGGAGGGGGGGGTGTTTGTTTTGGAAGT
AGCTGTGCCTCACTTTTGTGATTTCGCTCGTTTGCAAGACATCAGTGTTC
CTCCCGGCTGCATGGAAATCGTCCCACTGCCACAGCTAAAAGGGAAACCC
AGGCGGTCGCACTTCCACTTCGTGAATCTAGGCGAGGAGAACCTTGTTGC
TCACTGTTGGGGTGCTGTTAAGAAGACGGGCTTTTGGAACTTTTTCAGGA
TCAACCTCGGAGCGGGTGCAACGTCGGGGAACGCCGAGTTCGAGGGACAC
CGACAGCCCGAAGACACTGGTAACGGTACGGTTTACTCGGTGCAGGTGCC
TCGTAGCGATCCTACGAATCCGAAGAAGACCGAGGTTTGTTGGGTTTCCC
TTGGCACGGAGTCAGTGACGGTGGCATGGACATCGCAACGACGCCCTCAA
AATGCTAGACACCGGATAGCGCAAGTGTGGGGCTCCAGCCCCATGCAGCA
TAAACACGTCATGGTGTTCGGCCCCTTGTTGGATATCGACACGTGTCAGG
TGGCAAACCTGAGGGTAGATGACAACGAATCCTTCGGAAAACTTGTGAAG
TCAAAGGTGGAATGA
back to top