mRNA_Ecto-sp13_S_contig6625.17482.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6625.17482.1
Unique NamemRNA_Ecto-sp13_S_contig6625.17482.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6625.17482.1 vs. uniprot
Match: D7FTK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK2_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.170e-37
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 2 
Query:    2 ENVPNLVNEMGSGMKPAGSMGGLSKAKMEMMEMDAAGLLLPQVDVRDMRLTTTSPAGSVESDFWGDADGDDGIGNDGFDPME 247
            EN PNLVN+MGSG++P GS GGLS+AKMEMMEMDAA LLLPQVDVRDMRLTTTSPAGSVESDFWG+ +GDD + NDGFDPME
Sbjct:   11 ENNPNLVNDMGSGIRPTGSGGGLSEAKMEMMEMDAAALLLPQVDVRDMRLTTTSPAGSVESDFWGEGEGDDVMENDGFDPME 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6625.17482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTK2_ECTSI6.170e-3782.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6625contigEcto-sp13_S_contig6625:6265..7962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size249
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-13_004700.1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463912.451783-CDS-Ecto-sp13_S_contig6625:6264..63631681463912.451783-CDS-Ecto-sp13_S_contig6625:6264..6363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6625 6265..6363 -
1681463912.4632423-CDS-Ecto-sp13_S_contig6625:7814..79341681463912.4632423-CDS-Ecto-sp13_S_contig6625:7814..7934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6625 7815..7934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463912.4740634-UTR-Ecto-sp13_S_contig6625:7934..79621681463912.4740634-UTR-Ecto-sp13_S_contig6625:7934..7962Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6625 7935..7962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6625.17482.1prot_Ecto-sp13_S_contig6625.17482.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6625 6265..7934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6625.17482.1

>prot_Ecto-sp13_S_contig6625.17482.1 ID=prot_Ecto-sp13_S_contig6625.17482.1|Name=mRNA_Ecto-sp13_S_contig6625.17482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MGSGMKPAGSMGGLSKAKMEMMEMDAAGLLLPQVDVRDMRLTTTSPAGSV
ESDFWGDADGDDGIGNDGFDPME
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mRNA from alignment at Ecto-sp13_S_contig6625:6265..7962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6625.17482.1 ID=mRNA_Ecto-sp13_S_contig6625.17482.1|Name=mRNA_Ecto-sp13_S_contig6625.17482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1698bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6625:6265..7962- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAATGTTCCCAACCTCGTCAACGAAATGGGGTCGGGCATGAAGCCGG
CGGGGAGCATGGGTGGGTTGTCGAAGGCCAAGATGGAAATGATGGAGATG
GACGCGGCGGGGCTGCTGCTTCCACAGGTGGACGTCCGAGACATGAGGGT
GAGTGGGATGACGGACCAGTGTCAAATAGCCCACATAGACTTGTCGAAAC
TGTTCTTACCGTACGGCGAACACCTCTGGTGCGTATTTATGTTACTGTCA
TTTTAAAGTAGTTCGTGTAGGAAACATGAGGGTGAGTGGGATTCCGGATC
AGTGTCAAGTAGCCTCCCTCCCTGGGCTCGACGGGATGATTCTTACACCA
CATGGCGAACACCTCTGATGCTTGTCCGTGTTGATGACATTTTATGCTAC
GTGCATGGAAGATGAGGTTGAGTTGGATCGTGGATCAGTTGTATGAGACA
CAGGGGTGTATGGGATCACAGGTCAATGCCAAGTACAACCTCCTCCTGCT
GTGCCTTTTTGAACCGCACTTTTTTCACTGCGTCTAAGACTTCACTGTCG
CACTTATTAGTTTGGGGCAAACAACCTCACCGAATCAAGATTATGTGACG
ACATGACCACTATTACATCAGTTCTTCACCTGTCAAAACGGGGAGCATTT
TCAGCGCGTGGATGTGACTGCCCACATAATAATTGCACAGCAGGAGGGTG
CGGTGGGCAAGGGGCCTCAGGGAGAGAAACCCTTCCCTGTGTCACCCCGG
GTTGGAGTGAACGGCACGAATGCTGGAACCGCGCTGATGTTAGATTTGTA
CTCGAGGGGCTTTTTGGTTGTATATTTTTGATCGGTTTTGGTCATTATCC
TGAAAATCGATTCGAAGAAAAATATGCGCAGCCAAATCACGGAAAAATAG
CGTACAGATCGAGTACAAGCCTAGCTGATTTCAAGTGGCGACGAAAATAA
ATAAATAGATGAAACTCATTAAACGGAGTGAGTGAAGGCCGAAGCATTTT
TTATTTGCTTCGGCCTTTTTCGATGGGCACCAAACAAGGCGTTGCGCGCG
CTGGATCCATGTTCCGTGAGATGGCACACCTTCCGACGTGCTCCCGGAAA
GCACACCGGTAGCACACAAGATACCGTAGTTTGCATTCGGAAGATATTTC
ACCCTTTGGAGCCTACAACTTTTAAAAGCGGTGACGGTGCCGAAATTGGC
AGCATTGGAACTATCTCGTCGAGAGCTTTTCAACAGCATATCATTTGATT
TTAGAGTTCTCTTTGTCATGGGGTGTTTGAGCTTTGAAAATCGGCCTTGC
GTAACCTACCGTACTACTGGTTCATACCGTACCTGGCATGTATTTGTGAG
CGCCGACTATGAGCAAGCTGGATACCGTAGCTGTCAACATCGCGTGAGCA
ACACCAGAGTGAATTATCGAACTGCTGACGACACCGGATTGTGAATTGTG
CTGTCGCGGCAAAGTACACTGAAATAATGAACTCATGCATTAACGTATGT
ATCACTTGCTGACGACATCTATGTGTGTCTGTATGTGCCAACACGGATGG
TGATGATGATGATGATGATGATGATGATAATGATGATGACGAAATGCAGC
TCACGACTACATCGCCGGCGGGGTCGGTGGAATCGGACTTCTGGGGTGAT
GCCGATGGCGATGACGGCATCGGAAACGACGGCTTTGATCCAATGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6625:6265..7962-

>mRNA_Ecto-sp13_S_contig6625.17482.1 ID=mRNA_Ecto-sp13_S_contig6625.17482.1|Name=mRNA_Ecto-sp13_S_contig6625.17482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6625:6265..7962- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTCGGGCATGAAGCCGGCGGGGAGCATGGGTGGGTTGTCGAAGGC
CAAGATGGAAATGATGGAGATGGACGCGGCGGGGCTGCTGCTTCCACAGG
TGGACGTCCGAGACATGAGGCTCACGACTACATCGCCGGCGGGGTCGGTG
GAATCGGACTTCTGGGGTGATGCCGATGGCGATGACGGCATCGGAAACGA
CGGCTTTGATCCAATGGAG
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