mRNA_Ecto-sp13_S_contig662.17477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig662.17477.1
Unique NamemRNA_Ecto-sp13_S_contig662.17477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig662.17477.1 vs. uniprot
Match: D7FIP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP0_ECTSI)

HSP 1 Score: 615 bits (1587), Expect = 8.070e-218
Identity = 315/351 (89.74%), Postives = 321/351 (91.45%), Query Frame = 2 
Query:   47 MADTTSQENDCSSWSDFETRGGGEADLASLPAAVRAIVAECRAKSMNPPPPEQHAREVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPSQVLPPTMIGLPPELQRDLQCSNDGFCQWASDDVPEDHLFQLGEKVTEAFSGEPGGSRRGEGLAADVIAEVASLSHTDWSVCLERYVDFRRCDPAAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKASTSSETGTKDSXXXXXXXXXXXXXXXXXGQRNTAALLAICRLAASVAASWRGDADPVAFRDKVSGSELRKLGTLGKEAEVALAEAFFYGEGAGAAF 1099
            MADTTSQEN+CSSWSDFETRGGGEADL+SLPAAVRAIV ECRAKS NPPPPEQ A EVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDP+QVLPPTMIGLPPELQRDLQ SNDGFCQWASDD+PEDHLF+LGEK+TEAFSGEPGGSRR EGL  DVIAEVASLS TDWSVCLERYVDFRRCDP AIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKA TSSETGTKDS                 GQRNTAALLAICRLAASVAAS RGDADPVAFRDKVSGSELRKLG LGKEAEVALAEAFFYGEGAGAAF
Sbjct:    1 MADTTSQENECSSWSDFETRGGGEADLSSLPAAVRAIVEECRAKSANPPPPEQQAGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGFCQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRRAEGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDPTAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTSSETGTKDSSASGRNGGEQAATSAGNGQRNTAALLAICRLAASVAASVRGDADPVAFRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGAAF 351
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig662.17477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIP0_ECTSI8.070e-21889.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig662contigEcto-sp13_S_contig662:17194..19927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1674
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000480.1
Cds size1056
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig662.17477.1prot_Ecto-sp13_S_contig662.17477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig662 17766..19881 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.991581-UTR-Ecto-sp13_S_contig662:17193..177651681463911.991581-UTR-Ecto-sp13_S_contig662:17193..17765Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig662 17194..17765 -
1681463912.0764585-UTR-Ecto-sp13_S_contig662:19881..199271681463912.0764585-UTR-Ecto-sp13_S_contig662:19881..19927Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig662 19882..19927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463912.0033178-CDS-Ecto-sp13_S_contig662:17765..181831681463912.0033178-CDS-Ecto-sp13_S_contig662:17765..18183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 17766..18183 -
1681463912.0141857-CDS-Ecto-sp13_S_contig662:18448..186151681463912.0141857-CDS-Ecto-sp13_S_contig662:18448..18615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 18449..18615 -
1681463912.0248144-CDS-Ecto-sp13_S_contig662:18770..188691681463912.0248144-CDS-Ecto-sp13_S_contig662:18770..18869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 18771..18869 -
1681463912.0442507-CDS-Ecto-sp13_S_contig662:19339..194561681463912.0442507-CDS-Ecto-sp13_S_contig662:19339..19456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 19340..19456 -
1681463912.0595376-CDS-Ecto-sp13_S_contig662:19626..198811681463912.0595376-CDS-Ecto-sp13_S_contig662:19626..19881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 19627..19881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig662.17477.1

>prot_Ecto-sp13_S_contig662.17477.1 ID=prot_Ecto-sp13_S_contig662.17477.1|Name=mRNA_Ecto-sp13_S_contig662.17477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp
MADTTSQENDCSSWSDFETRGGGEADLASLPAAVRAIVAECRAKSMNPPP
PEQHAREVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASL
DGEHDCGPDSGLVLPAVYSMDPSQVLPPTMIGLPPELQRDLQCSNDGFCQ
WASDDVPEDHLFQLGEKVTEAFSGEPGGSRRGEGLAADVIAEVASLSHTD
WSVCLERYVDFRRCDPAAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLS
AAAKASTSSETGTKDSSVSGQNGGEEATTSAGNGQRNTAALLAICRLAAS
VAASWRGDADPVAFRDKVSGSELRKLGTLGKEAEVALAEAFFYGEGAGAA
F*
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mRNA from alignment at Ecto-sp13_S_contig662:17194..19927-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig662.17477.1 ID=mRNA_Ecto-sp13_S_contig662.17477.1|Name=mRNA_Ecto-sp13_S_contig662.17477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:17194..19927- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCACGCACCGGCAGTGCCAGAGTACGGGTGCACGAATAGAAAAGCATGG
CAGACACCACCTCTCAGGAAAATGATTGTTCTTCATGGTCGGACTTTGAA
ACTAGAGGTGGGGGTGAAGCAGATCTGGCATCGCTGCCGGCGGCTGTGAG
GGCGATCGTTGCGGAGTGCAGGGCAAAGTCAATGAACCCGCCGCCCCCTG
AACAGCATGCTCGGGAGGTCCTGCCGTACCCGTGTCGCATGTACGAGGAA
AGCATTCCTGGCGAGGAAGGCATGCTTCAGCTACAGTGGATGAGACTCGA
TGTGAGTACGTAAGTTGATCATTTGCGATCAATGACGGGCGGACTGCAGA
TCAACACCGACTGCGTTTTAGGGAATTTTCAAATTCAAATTTAAACTTTT
GACGTTGTTGATAATCTGTGTGTGCGTGTGACTTTGGTCCCATCGGTCCA
TCTGCTGCGTTCCGTACACAGATGTCAAACATGGACAGCGAACGCTGCTG
GGGAGAGGCGAGTTTGGACGGAGAGCACGATTGCGGCCCAGATTCCGGCT
TGGTACTCCCCGCGGTGTATAGCATGGATCCATCTCAGGTGCGCCTCACG
ATGCAACCTCGATGTCCACACCAATCCCCTCCTCACCACAGCTTTTGGTG
TCGGGGGAAGGAGGTTTTTCCGTATCTATGCATAGTTCGGAAGCAGCGGA
ATTGAGAACAACAGAAATACCTTGTTTCTCAGAGTCCTCTAAGATACAAT
GCTCAAATTCGATTCATACGAATTTCGAAAATTATGTACGGCTTCGATGA
CAACTGCTGTAAAGTAGTTGTGGACCTTTTCATTAGAGAAAGTCAATGTG
CACCAGTTGTGGACTAGTTGTGAAGTTTTCTACTTTGAATTCCAGCGAGT
TATTTTCAGGCATTGCGATGTCTTCCTCCTGTAGACGAACGGTGGTTGTG
TCGTCTGTTTCACCCTCGGGTCTTTGAGTAACATTTTTGCATCCACACCA
CCCAGAACCTAATCCCTCGCTTGCAACGTGTCACTGGTTGTCGGATACGC
TGCTACAGGTTTTGCCCCCAACGATGATCGGACTCCCGCCAGAGCTACAG
CGTGACTTACAATGCAGCAACGACGGGTTTTGCCAATGGGCTTCGGATGA
TGTCCCGGTTAGGACGGCGTCCGCGTGGTTGCGTGGTTGTGATCATCGTT
GTCGCGCGTTTCATGTCCTTGATGCGCAGCAGTCAACTAGCGTTGGCACC
CGTCTCACGACGTTCATGAGTCATGCTCATTGTTTCTTGACCTCTCGACG
CACGCCCAACAGGAGGACCATCTCTTTCAGCTTGGTGAAAAAGTCACGGA
GGCGTTTTCCGGCGAACCGGGCGGTAGCAGGCGAGGGGAGGGCTTGGCCG
CAGACGTCATTGCGGAAGTGGCATCGTTGTCCCACACTGATTGGTCCGTC
TGCCTCGAGCGCTACGTTGACTTCCGAAGGTGGGCGAGCGAAGTGCAAAC
GCCAGTAGCGCGTCTCACCCTCCTAAACACTTTGTGTAGACATTGCTCAC
ATACAACTGTCGCTTCTGATGCGAGCGCGACCCCCACGTCGTTACCACGA
CTGCTTCACCTCGTACGCTAGGGCACCACACACCACGACTTGCGCCAAAC
GAAAAGATGGAACATGCGAAGACCGAAGAACCCTCGGGTTGCCTCATTGT
TTTCTCATCCTCTCGACACCCCACTCACACACACACGCACACAGGTGCGA
TCCCGCGGCGATCGCACAAGTCCTCTTGGCCGCTTCTCCCCCTACCCTCG
ACTGCCTCCTGGGCACCGTACTGCCGGGGCTTGTCACCAAGATTTCATCC
CTCAGCGCCGCTGCGAAGGCATCCACTTCCTCGGAGACAGGAACCAAAGA
CAGCAGCGTAAGCGGTCAGAATGGTGGAGAAGAAGCCACGACAAGTGCAG
GCAATGGTCAAAGGAACACCGCTGCTTTGCTCGCAATCTGTCGGCTGGCG
GCCTCTGTCGCGGCCTCCTGGAGGGGGGATGCAGATCCCGTGGCGTTTCG
GGATAAAGTGTCGGGTAGCGAGCTGCGAAAGCTGGGGACGCTCGGGAAGG
AGGCGGAGGTCGCGCTTGCGGAGGCGTTTTTCTACGGGGAGGGAGCGGGA
GCGGCGTTTTAGAGCCCCCTTTGAAGGTCATGTCCCTGGATAAATGCTAA
TGCGTTTTTCATGGGCCATGATTCGAGTCGGGGAAACTTCAACTTTCCTC
GGTCAGCGTGGTCGGGGAGCGACTCAGAGGATCACACATGATGGTGTCGT
TCCTAGTCGGCACCTCCCACCTGGGGGAGTCGAGCAGACCTGCGTTTAGC
TAGTATAGCGACGCTGTGGCTTCATATCAGAGCTGTCACTGTCTGACAGT
GCAAATTGGACCGTCCCATCTGAATGACGTCGTCGCCTCAATCTCTCTCC
CCGACCGCGGAGACCCTCGGGAGCTTTCGCTGACGCAAAAAGCGGACTTC
GGCGTGAAAAGACCCACAGCCGGTGTATTACGCGTGTCGTTGTTGCGAAT
CCTTTCTGCGGTCAAGTGTTCCTGCGCAGAGGGGGTTTTGCACCGCTGTC
AGTCTACTACACCTGAAGGGAATGGTCATGTGATATATCCACGTCGGTTC
TACTTCCGTTTGGAGCCATTGTTGTGTGTAGACCTCTTGTCGCTGCTTTG
AAAGTTGCAAGTCATTACTGCACAAGCTCCCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig662:17194..19927-

>mRNA_Ecto-sp13_S_contig662.17477.1 ID=mRNA_Ecto-sp13_S_contig662.17477.1|Name=mRNA_Ecto-sp13_S_contig662.17477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:17194..19927- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGACACCACCTCTCAGGAAAATGATTGTTCTTCATGGTCGGACTT
TGAAACTAGAGGTGGGGGTGAAGCAGATCTGGCATCGCTGCCGGCGGCTG
TGAGGGCGATCGTTGCGGAGTGCAGGGCAAAGTCAATGAACCCGCCGCCC
CCTGAACAGCATGCTCGGGAGGTCCTGCCGTACCCGTGTCGCATGTACGA
GGAAAGCATTCCTGGCGAGGAAGGCATGCTTCAGCTACAGTGGATGAGAC
TCGATATGTCAAACATGGACAGCGAACGCTGCTGGGGAGAGGCGAGTTTG
GACGGAGAGCACGATTGCGGCCCAGATTCCGGCTTGGTACTCCCCGCGGT
GTATAGCATGGATCCATCTCAGGTTTTGCCCCCAACGATGATCGGACTCC
CGCCAGAGCTACAGCGTGACTTACAATGCAGCAACGACGGGTTTTGCCAA
TGGGCTTCGGATGATGTCCCGGAGGACCATCTCTTTCAGCTTGGTGAAAA
AGTCACGGAGGCGTTTTCCGGCGAACCGGGCGGTAGCAGGCGAGGGGAGG
GCTTGGCCGCAGACGTCATTGCGGAAGTGGCATCGTTGTCCCACACTGAT
TGGTCCGTCTGCCTCGAGCGCTACGTTGACTTCCGAAGGTGCGATCCCGC
GGCGATCGCACAAGTCCTCTTGGCCGCTTCTCCCCCTACCCTCGACTGCC
TCCTGGGCACCGTACTGCCGGGGCTTGTCACCAAGATTTCATCCCTCAGC
GCCGCTGCGAAGGCATCCACTTCCTCGGAGACAGGAACCAAAGACAGCAG
CGTAAGCGGTCAGAATGGTGGAGAAGAAGCCACGACAAGTGCAGGCAATG
GTCAAAGGAACACCGCTGCTTTGCTCGCAATCTGTCGGCTGGCGGCCTCT
GTCGCGGCCTCCTGGAGGGGGGATGCAGATCCCGTGGCGTTTCGGGATAA
AGTGTCGGGTAGCGAGCTGCGAAAGCTGGGGACGCTCGGGAAGGAGGCGG
AGGTCGCGCTTGCGGAGGCGTTTTTCTACGGGGAGGGAGCGGGAGCGGCG
TTTTAG
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