prot_Ecto-sp13_S_contig6616.17468.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6616.17468.1
Unique Nameprot_Ecto-sp13_S_contig6616.17468.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length194
Homology
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: D8LMP4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP4_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 6.390e-76
Identity = 120/135 (88.89%), Postives = 123/135 (91.11%), Query Frame = 0
Query:    1 MVAGGECPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRVKVRSITKTLSLREIEQFNVRTPRDPNQVRTKAQMKRARAKRFNCRKP---------IPFTVTKAVRVKLRTQTKEMNRLLADAPHPQ 126
            MVAGGECPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRV+VRSITKTLSLREIEQFNVRTP DP+QVRTKAQ+KRARAKRF CRKP         IPFTVTKAVRVKLRTQ KEMNRLLADAPHPQ
Sbjct:   35 MVAGGECPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPHDPSQVRTKAQIKRARAKRFKCRKPASVVFDDIYIPFTVTKAVRVKLRTQMKEMNRLLADAPHPQ 169          
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: D8LMP5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP5_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.810e-18
Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 0
Query:    7 CPICQGLLPDEERGILRCNHVFCFKCIHKWTKTE-SACPVCRVKVRSITKTLSLREIEQFNVRTPRDPNQVRTKAQMKRARAKRFNCRK-PIPFTVTKAVRVKLRTQTKEMNRLLADAPHPQAEMG 130
            CPICQ LLP+E RGI++C HVFC KC+ +W K + ++CP CR KV  I KTLSL E  + N    R P    TKAQ+KR + K    +  P P   T+ +RV  +  ++E  R  A APHPQA  G
Sbjct:   57 CPICQDLLPEENRGIVKCGHVFCLKCVLQWVKKQQNSCPTCRAKVCHIKKTLSLAEALEKNAN--RKPL---TKAQLKRTKRKSTIGKPFPKPDITTEKIRVHKKV-SREQIRQNAMAPHPQAPGG 176          
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.510e-18
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = 0
Query:    7 CPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRVKVRSITKTLSLREIEQFNVRTPRDPNQVR-----TKAQMKRARAKRFNCRKPIPFTVTKAVRVKLRTQTKEMNRLLADAPHPQAEMG 130
            C IC   LP+ ERG+L C HVFCF CIH+WTK  S CP CRV+++ ITKTLS  +  +    T +     R      + Q+KRAR +    + P    VTK VRV+ ++      +  A APHPQA  G
Sbjct:  176 CAICCDKLPNLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKKPRKQLKRARHRDSRAKNPASGFVTKTVRVRPKSLKMTPAQQRA-APHPQARGG 303          
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: A0A6H5JQU9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.820e-16
Identity = 57/141 (40.43%), Postives = 78/141 (55.32%), Query Frame = 0
Query:    4 GGECPICQGLLPDEERGILRCNHVFCFKCIHKWTKTE-SACPVCRVKVRSITKTLSLREIEQFNVRTPRDPNQVRTKAQMKRARAK-------------RFNCRKPIPFTVTKAVRVKLRTQTKEMNRLLADAPHPQAEMG 130
            G  CPICQ LLP+E RGIL+C HVFC KC+ +W K + ++CP CR +V  I +TLS  E  + N    R P +   KAQ+KRA+ K               +  +  P   T+ +RV+ +  ++E  R  A APHPQA  G
Sbjct:   78 GDRCPICQDLLPEENRGILKCGHVFCLKCVLQWVKKQQNSCPTCRAEVCHIKRTLSSAEALEKNA--DRKPPR---KAQLKRAKRKSAVGKPSPGDRYSESDVLQQKPDITTEKIRVRKKV-SREQIRQNATAPHPQAPGG 212          
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.220e-14
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    7 CPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRVKVRSITKTLS 58
            C IC   LPD ERG+L C HVFCF CIH+WTK  S CP CRV+++ ITKTLS
Sbjct:   80 CAICCDKLPDLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLS 131          
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: A0A6H5JR52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR52_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 8.770e-14
Identity = 45/81 (55.56%), Postives = 49/81 (60.49%), Query Frame = 0
Query:    1 MVAGGECPICQGLLPDEERGILRC------------NHVFCFKCIHKWTKTESACPVCRVKVRSITKTLSLREIEQFNVRT 69
            MVAGGEC ICQGLLPDEERGILRC                    +       S+C    +KVRSITKTLSLREIEQFNVR+
Sbjct:   40 MVAGGECVICQGLLPDEERGILRCLSAVAELNIAAIAEFLLLLVVFSCCSGSSSC----LKVRSITKTLSLREIEQFNVRS 116          
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: UPI000B932F00 (pre-mRNA-splicing factor CWC24-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B932F00)

HSP 1 Score: 58.9 bits (141), Expect = 9.340e-8
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0
Query:    7 CPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCR 47
            C IC  +   E+  +L+CNHVFCFKCIH W +T  +CP+CR
Sbjct:   43 CSICFDIF--EKPSVLKCNHVFCFKCIHNWMRTNKSCPICR 81          
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: A0A1R2AZW0_9CILI (RING-type domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AZW0_9CILI)

HSP 1 Score: 50.8 bits (120), Expect = 5.360e-5
Identity = 25/73 (34.25%), Postives = 42/73 (57.53%), Query Frame = 0
Query:    7 CPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRVKVRSITKTLSLREIEQFN--VRTPRDPNQVR 77
            C IC   +  + + I  C+H+FCFKCI KW+  E++CP+C+ +   IT+    +E ++    ++  R  NQ R
Sbjct:   12 CGICFDEIEFQGK-INSCSHLFCFKCIKKWSDNENSCPICKSRFEKITRIARRKEYKKSRSIIKLVRTKNQER 83          
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Match: A0A2E5JAS0_9FLAO (RING-type domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E5JAS0_9FLAO)

HSP 1 Score: 51.2 bits (121), Expect = 7.480e-5
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 0
Query:    6 ECPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRVKVRSIT 54
            EC IC   + ++ + +  C+H FC KCI +WTKT + CP+CR  +  IT
Sbjct:    3 ECCICFEKIKNKAK-LDSCDHEFCVKCIKRWTKTNTTCPLCRTNITKIT 50          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6616.17468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LMP4_ECTSI6.390e-7688.89RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP5_ECTSI1.810e-1846.83RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGV7_ECTSI4.510e-1842.64Similar to PHD finger family protein, partial n=1 ... [more]
A0A6H5JQU9_9PHAE1.820e-1640.43RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2A7_9PHAE1.220e-1465.38RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JR52_9PHAE8.770e-1455.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000B932F009.340e-853.66pre-mRNA-splicing factor CWC24-like n=1 Tax=Myzus ... [more]
A0A1R2AZW0_9CILI5.360e-534.25RING-type domain-containing protein n=1 Tax=Stento... [more]
A0A2E5JAS0_9FLAO7.480e-542.86RING-type domain-containing protein n=1 Tax=Flavob... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 7..46
e-value: 6.7E-6
score: 35.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 6..47
e-value: 5.1E-11
score: 42.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 7..47
score: 13.212
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 3..66
e-value: 4.3E-15
score: 56.8
NoneNo IPR availablePANTHERPTHR46077:SF1TOP1 BINDING ARGININE/SERINE RICH PROTEINcoord: 6..143
NoneNo IPR availablePANTHERPTHR46077FAMILY NOT NAMEDcoord: 6..143
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 6..58
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 24..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6616contigEcto-sp13_S_contig6616:988..3863 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6616.17468.1mRNA_Ecto-sp13_S_contig6616.17468.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6616 66..4846 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6616.17468.1 ID=prot_Ecto-sp13_S_contig6616.17468.1|Name=mRNA_Ecto-sp13_S_contig6616.17468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MVAGGECPICQGLLPDEERGILRCNHVFCFKCIHKWTKTESACPVCRVKV
RSITKTLSLREIEQFNVRTPRDPNQVRTKAQMKRARAKRFNCRKPIPFTV
TKAVRVKLRTQTKEMNRLLADAPHPQAEMGPADAESVRNLRVVPFGGHAQ
VPVEEARSAAAASGSTSSSGLPGARPSATAATGGGAAGGVARR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS