mRNA_Ecto-sp13_S_contig6611.17464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6611.17464.1
Unique NamemRNA_Ecto-sp13_S_contig6611.17464.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 9.860e-56
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1
Query:    4 GRTVMPDVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            GRTVMP VVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK
Sbjct:  235 GRTVMPKVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 331          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: D8LPM8_ECTSI (Similar to C18orf24 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM8_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.950e-55
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1
Query:   16 MPDVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            MP+VVPVELVTVGEL+GVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK
Sbjct:    1 MPEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 93          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A835YPY4_9STRA (C18orf24 protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.860e-14
Identity = 32/82 (39.02%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   34 VELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRA 279
            ++LVT  EL  +P++TRGRL ++ VNAA+T++Q  +  ++  L++P+ K++EK R R E+    E P H G  F+ E ++R+
Sbjct:    4 IQLVTSAELQALPKTTRGRLQLDHVNAAITELQAVLTTKYTLLARPKSKLNEKLRRRYEQYAAAEAPEHEGAHFLTESEMRS 85          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A7K6LCH4_9CORV (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Falcunculus frontatus TaxID=254539 RepID=A0A7K6LCH4_9CORV)

HSP 1 Score: 55.5 bits (132), Expect = 1.760e-7
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   40 LVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            L+T+ E   VP   +GRLT +Q+NA V ++ KA+  ++  + +P K MS   R   ++ + QE  A  G  FI E D++A    K
Sbjct:   31 LITMEEFESVPAYMKGRLTYDQINAVVQEMNKAVAAKYKIMYQPLKNMSIPDRNLYDKFMEQETNATRGLFFIVEADIKAFTQLK 115          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A7L1H037_9PICI (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Indicator maculatus TaxID=545262 RepID=A0A7L1H037_9PICI)

HSP 1 Score: 56.2 bits (134), Expect = 3.110e-7
Identity = 32/87 (36.78%), Postives = 44/87 (50.57%), Query Frame = 1
Query:   34 VELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            V L+TV E   VP   +GR+T EQ+N  V +I KA+ER++  L +P K M+   R        +E     G  FI E D+R     K
Sbjct:  134 VGLITVEEFKDVPAYMKGRITYEQINNTVNEINKAVERKYKILQQPLKSMNMATRNHYHRFKEEETKDTKGEFFIVEADMREFTQVK 220          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A7L4CMA9_9AVES (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Nyctiprogne leucopyga TaxID=382315 RepID=A0A7L4CMA9_9AVES)

HSP 1 Score: 55.8 bits (133), Expect = 4.270e-7
Identity = 32/87 (36.78%), Postives = 43/87 (49.43%), Query Frame = 1
Query:   34 VELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            + L+T  E   VP   +GRLT EQ+NA V DI KA+  ++  L +P K M+   R      L +E     G  FI E DL+     K
Sbjct:  133 ISLITAEEFESVPTYMKGRLTYEQINAVVKDINKAVVGKYKILHQPLKSMNAAVRNLYHRFLEEETKETKGEFFIVEADLKQFTELK 219          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A852N8Z8_9PASS (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Pteruthius melanotis TaxID=357074 RepID=A0A852N8Z8_9PASS)

HSP 1 Score: 54.3 bits (129), Expect = 4.880e-7
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1
Query:   40 LVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            L+T  E   VP   +GR+T +Q+NA V +I KA+  ++  L +P K +S + R   +  L +E     G+ FI E DL+A    K
Sbjct:   31 LITTEEFGSVPAYMKGRITCDQINAVVQEINKAVVAKYKILHQPLKSVSVQVRNLYDRFLEEETKDTRGQFFIVEADLKAFTQLK 115          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: UPI0014713D56 (spindle and kinetochore-associated protein 1 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014713D56)

HSP 1 Score: 55.5 bits (132), Expect = 5.720e-7
Identity = 28/87 (32.18%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   34 VELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            +E++TV E   +P+  +GR+T +Q+NAAV  I  A+  ++  L +P K +S   R   ++   QE     G+ F+ E D+R     K
Sbjct:  128 MEVITVQEFESIPQYMKGRVTYDQLNAAVQSINAAVMAKYKILHQPMKTLSSSSRKMYQQFKSQETEGTKGQYFVVEEDIREFTQMK 214          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A093CS66_TAUER (Spindle and kinetochore-associated protein 1 (Fragment) n=2 Tax=Tauraco erythrolophus TaxID=121530 RepID=A0A093CS66_TAUER)

HSP 1 Score: 55.5 bits (132), Expect = 5.900e-7
Identity = 33/90 (36.67%), Postives = 44/90 (48.89%), Query Frame = 1
Query:   25 VVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            V  V L+T+ E   VP   +GRLT  QVNA VTDI KA+  ++  L +P K M+   R      L  E     G  F+ E D+    + K
Sbjct:  130 VKKVPLITIEEFQSVPTYMKGRLTYNQVNAVVTDINKAVVGKYKILHQPLKSMNAAVRNLYHRFLKDETKDTKGEFFVVEADIEEFANLK 219          
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A7K7L7P6_9AVES (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Asarcornis scutulata TaxID=75869 RepID=A0A7K7L7P6_9AVES)

HSP 1 Score: 54.7 bits (130), Expect = 6.010e-7
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 1
Query:   40 LVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
            L+T  E   VP   +GRLT +Q+NA V D+ KA+  ++  L +P K M+   R      LG+E     G  F+ E D++     K
Sbjct:   67 LITTEEFESVPAYMKGRLTYDQINAVVQDLNKAVVGKYKILHQPLKSMNASVRNLYHRFLGEETKDTKGEFFVVEADIKEFTQLK 151          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVT8_9PHAE9.860e-5698.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPM8_ECTSI1.950e-5597.85Similar to C18orf24 protein n=1 Tax=Ectocarpus sil... [more]
A0A835YPY4_9STRA5.860e-1439.02C18orf24 protein-like protein n=1 Tax=Tribonema mi... [more]
A0A7K6LCH4_9CORV1.760e-735.29Spindle and kinetochore-associated protein 1 (Frag... [more]
A0A7L1H037_9PICI3.110e-736.78Spindle and kinetochore-associated protein 1 (Frag... [more]
A0A7L4CMA9_9AVES4.270e-736.78Spindle and kinetochore-associated protein 1 (Frag... [more]
A0A852N8Z8_9PASS4.880e-735.29Spindle and kinetochore-associated protein 1 (Frag... [more]
UPI0014713D565.720e-732.18spindle and kinetochore-associated protein 1 n=1 T... [more]
A0A093CS66_TAUER5.900e-736.67Spindle and kinetochore-associated protein 1 (Frag... [more]
A0A7K7L7P6_9AVES6.010e-734.12Spindle and kinetochore-associated protein 1 (Frag... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6611contigEcto-sp13_S_contig6611:7364..7867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score179.1
Seed ortholog evalue9.5e-43
Seed eggNOG ortholog2880.D8LPM8
Preferred nameSKA1
Model size294
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0000940,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0007049,GO:0007059,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0031110,GO:0032886,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051301,GO:0051493,GO:0065007,GO:0070507,GO:0072686,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513
Exons2
EggNOG free text desc.microtubule binding
EggNOG OGsKOG4832@1,KOG4832@2759
Ec32 ortholog descriptionProtein of unknown function DUF1395
Ec32 orthologEc-06_004800.1
Cds size279
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.1146953-UTR-Ecto-sp13_S_contig6611:7363..73781681463911.1146953-UTR-Ecto-sp13_S_contig6611:7363..7378Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6611 7364..7378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.140092-CDS-Ecto-sp13_S_contig6611:7378..75121681463911.140092-CDS-Ecto-sp13_S_contig6611:7378..7512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6611 7379..7512 +
1681463911.1500976-CDS-Ecto-sp13_S_contig6611:7722..78671681463911.1500976-CDS-Ecto-sp13_S_contig6611:7722..7867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6611 7723..7867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6611.17464.1prot_Ecto-sp13_S_contig6611.17464.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6611 7379..7867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6611.17464.1

>prot_Ecto-sp13_S_contig6611.17464.1 ID=prot_Ecto-sp13_S_contig6611.17464.1|Name=mRNA_Ecto-sp13_S_contig6611.17464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MPDVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLS
KPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK
back to top

mRNA from alignment at Ecto-sp13_S_contig6611:7364..7867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6611.17464.1 ID=mRNA_Ecto-sp13_S_contig6611.17464.1|Name=mRNA_Ecto-sp13_S_contig6611.17464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6611:7364..7867+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGGCGAACGGTGATGCCCGACGTTGTTCCGGTAGAGCTGGTGACGGT GGGGGAGCTGAACGGCGTGCCGAGGTCCACGCGGGGGCGGTTGACGATCG AGCAGGTTAACGCGGCGGTTACGGACATCCAGAAGGCGATAGAGAGAAGG TACATACTACAGGCGCAGAGACCGCTGACGACGCGGGCTATATGAGCCCT TCCATGCACGGCTGACAAGGTTGCGTACAGTGTAGATCCAGTACAACGAA CTTCAAGACGGCGCATGCATACATGCACTGGTGCTTGGAGATTGCCTGAG AGCTAAGGGCGCATGTCGGCCCCCTCCTCGCGCTCGCTCTACGTACCGTC CTCGTGCAGACATGCCTTTCTCTCCAAACCTCGGAAGAAAATGTCGGAGA AGCAGCGAGGTCGCCTGGAAGAGCTGCTGGGGCAGGAGGTGCCGGCGCAC GGAGGGCGGCCGTTCATCGCGGAGCCGGATCTGAGAGCGCTCCCGTCCTT CAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6611:7364..7867+

>mRNA_Ecto-sp13_S_contig6611.17464.1 ID=mRNA_Ecto-sp13_S_contig6611.17464.1|Name=mRNA_Ecto-sp13_S_contig6611.17464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6611:7364..7867+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGACGTTGTTCCGGTAGAGCTGGTGACGGTGGGGGAGCTGAACGG
CGTGCCGAGGTCCACGCGGGGGCGGTTGACGATCGAGCAGGTTAACGCGG
CGGTTACGGACATCCAGAAGGCGATAGAGAGAAGACATGCCTTTCTCTCC
AAACCTCGGAAGAAAATGTCGGAGAAGCAGCGAGGTCGCCTGGAAGAGCT
GCTGGGGCAGGAGGTGCCGGCGCACGGAGGGCGGCCGTTCATCGCGGAGC
CGGATCTGAGAGCGCTCCCGTCCTTCAAG
back to top