mRNA_Ecto-sp13_S_contig6611.17464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE) HSP 1 Score: 185 bits (469), Expect = 9.860e-56 Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1
Query: 4 GRTVMPDVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
GRTVMP VVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK
Sbjct: 235 GRTVMPKVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 331
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: D8LPM8_ECTSI (Similar to C18orf24 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM8_ECTSI) HSP 1 Score: 176 bits (447), Expect = 1.950e-55 Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1
Query: 16 MPDVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
MP+VVPVELVTVGEL+GVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK
Sbjct: 1 MPEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 93
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A835YPY4_9STRA (C18orf24 protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY4_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 5.860e-14 Identity = 32/82 (39.02%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 34 VELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRA 279
++LVT EL +P++TRGRL ++ VNAA+T++Q + ++ L++P+ K++EK R R E+ E P H G F+ E ++R+
Sbjct: 4 IQLVTSAELQALPKTTRGRLQLDHVNAAITELQAVLTTKYTLLARPKSKLNEKLRRRYEQYAAAEAPEHEGAHFLTESEMRS 85
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A7K6LCH4_9CORV (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Falcunculus frontatus TaxID=254539 RepID=A0A7K6LCH4_9CORV) HSP 1 Score: 55.5 bits (132), Expect = 1.760e-7 Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 40 LVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
L+T+ E VP +GRLT +Q+NA V ++ KA+ ++ + +P K MS R ++ + QE A G FI E D++A K
Sbjct: 31 LITMEEFESVPAYMKGRLTYDQINAVVQEMNKAVAAKYKIMYQPLKNMSIPDRNLYDKFMEQETNATRGLFFIVEADIKAFTQLK 115
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A7L1H037_9PICI (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Indicator maculatus TaxID=545262 RepID=A0A7L1H037_9PICI) HSP 1 Score: 56.2 bits (134), Expect = 3.110e-7 Identity = 32/87 (36.78%), Postives = 44/87 (50.57%), Query Frame = 1
Query: 34 VELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
V L+TV E VP +GR+T EQ+N V +I KA+ER++ L +P K M+ R +E G FI E D+R K
Sbjct: 134 VGLITVEEFKDVPAYMKGRITYEQINNTVNEINKAVERKYKILQQPLKSMNMATRNHYHRFKEEETKDTKGEFFIVEADMREFTQVK 220
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A7L4CMA9_9AVES (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Nyctiprogne leucopyga TaxID=382315 RepID=A0A7L4CMA9_9AVES) HSP 1 Score: 55.8 bits (133), Expect = 4.270e-7 Identity = 32/87 (36.78%), Postives = 43/87 (49.43%), Query Frame = 1
Query: 34 VELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
+ L+T E VP +GRLT EQ+NA V DI KA+ ++ L +P K M+ R L +E G FI E DL+ K
Sbjct: 133 ISLITAEEFESVPTYMKGRLTYEQINAVVKDINKAVVGKYKILHQPLKSMNAAVRNLYHRFLEEETKETKGEFFIVEADLKQFTELK 219
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A852N8Z8_9PASS (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Pteruthius melanotis TaxID=357074 RepID=A0A852N8Z8_9PASS) HSP 1 Score: 54.3 bits (129), Expect = 4.880e-7 Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1
Query: 40 LVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
L+T E VP +GR+T +Q+NA V +I KA+ ++ L +P K +S + R + L +E G+ FI E DL+A K
Sbjct: 31 LITTEEFGSVPAYMKGRITCDQINAVVQEINKAVVAKYKILHQPLKSVSVQVRNLYDRFLEEETKDTRGQFFIVEADLKAFTQLK 115
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: UPI0014713D56 (spindle and kinetochore-associated protein 1 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014713D56) HSP 1 Score: 55.5 bits (132), Expect = 5.720e-7 Identity = 28/87 (32.18%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 34 VELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
+E++TV E +P+ +GR+T +Q+NAAV I A+ ++ L +P K +S R ++ QE G+ F+ E D+R K
Sbjct: 128 MEVITVQEFESIPQYMKGRVTYDQLNAAVQSINAAVMAKYKILHQPMKTLSSSSRKMYQQFKSQETEGTKGQYFVVEEDIREFTQMK 214
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A093CS66_TAUER (Spindle and kinetochore-associated protein 1 (Fragment) n=2 Tax=Tauraco erythrolophus TaxID=121530 RepID=A0A093CS66_TAUER) HSP 1 Score: 55.5 bits (132), Expect = 5.900e-7 Identity = 33/90 (36.67%), Postives = 44/90 (48.89%), Query Frame = 1
Query: 25 VVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
V V L+T+ E VP +GRLT QVNA VTDI KA+ ++ L +P K M+ R L E G F+ E D+ + K
Sbjct: 130 VKKVPLITIEEFQSVPTYMKGRLTYNQVNAVVTDINKAVVGKYKILHQPLKSMNAAVRNLYHRFLKDETKDTKGEFFVVEADIEEFANLK 219
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Match: A0A7K7L7P6_9AVES (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Asarcornis scutulata TaxID=75869 RepID=A0A7K7L7P6_9AVES) HSP 1 Score: 54.7 bits (130), Expect = 6.010e-7 Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 1
Query: 40 LVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFK 294
L+T E VP +GRLT +Q+NA V D+ KA+ ++ L +P K M+ R LG+E G F+ E D++ K
Sbjct: 67 LITTEEFESVPAYMKGRLTYDQINAVVQDLNKAVVGKYKILHQPLKSMNASVRNLYHRFLGEETKDTKGEFFVVEADIKEFTQLK 151 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6611.17464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6611.17464.1 >prot_Ecto-sp13_S_contig6611.17464.1 ID=prot_Ecto-sp13_S_contig6611.17464.1|Name=mRNA_Ecto-sp13_S_contig6611.17464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp MPDVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSback to top mRNA from alignment at Ecto-sp13_S_contig6611:7364..7867+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6611.17464.1 ID=mRNA_Ecto-sp13_S_contig6611.17464.1|Name=mRNA_Ecto-sp13_S_contig6611.17464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6611:7364..7867+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6611:7364..7867+ >mRNA_Ecto-sp13_S_contig6611.17464.1 ID=mRNA_Ecto-sp13_S_contig6611.17464.1|Name=mRNA_Ecto-sp13_S_contig6611.17464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6611:7364..7867+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |