mRNA_Ecto-sp13_S_contig6611.17462.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig6611.17462.1
Unique Name	mRNA_Ecto-sp13_S_contig6611.17462.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Match: A0A6H5KV73_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV73_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.050e-48
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1

Query:  202 MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQHAPVPSKYRDKSPPKSGAAGKAARE 465
            MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQH+PVPSKYRD   PKSGAAGKAARE
Sbjct:    1 MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQHSPVPSKYRDNPSPKSGAAGKAARE 88

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Match: A0A3B4TF43_SERDU (RING-type domain-containing protein n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4TF43_SERDU)

HSP 1 Score: 59.7 bits (143), Expect = 4.440e-8
Identity = 31/75 (41.33%), Postives = 40/75 (53.33%), Query Frame = 1

Query:  160 LKCCICFSILEDPVMLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSL 384
            L C IC S  + PV  PC H  C+ C    +KE+QRCPQC TPIP    L+ +N  +  +V+    S N    SL
Sbjct:   18 LTCSICLSTFDCPVTTPCGHNFCQDCLLATWKETQRCPQCRTPIPTKPELK-KNTVLSAVVETFNLSSNKTEDSL 91

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Match: A0A0S7L9T8_9TELE (TRI47 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7L9T8_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 4.100e-5
Identity = 28/93 (30.11%), Postives = 46/93 (49.46%), Query Frame = 1

Query:  127 IEIVKETAGKHLKCCICFSILEDPVMLPCNHPLCRGCASQCFKESQR-----CPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQ 390
            I +  +T+  +  CC+C S+L DPV +PC H  C  C    + E+       CPQC        +L+  N  +  + +K+K S  +V +S +Q
Sbjct:   51 IMMADQTSPDYFSCCLCQSLLRDPVAIPCGHSFCMDCIDGYWNEADYTGIYICPQCKITFTQRPVLRP-NATLTMVAEKIKKSGLNVNLSASQ 142

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Match: A0A5A9P4U6_9TELE (Tripartite motif-containing protein 54 n=3 Tax=Cypriniformes TaxID=7952 RepID=A0A5A9P4U6_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 5.400e-5
Identity = 39/118 (33.05%), Postives = 53/118 (44.92%), Query Frame = 1

Query:  100 ESIGSVADFIEIVKETAGKHLKCCICFSILEDPVM-LPCNHPLCRGCASQCFKESQ---------RCPQCMTPIP----NLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQHAPVPSK 411
            ESI  V + +    E+  K L C IC  +   PV+ LPC H LCRGCAS  +             RCP C   +      +  LQ RN  + +++D  K      G S+TQ  P+  K
Sbjct:   98 ESILPVMEALRGSMESLEKQLSCPICLDMFTKPVVILPCQHNLCRGCASDLYDSRNPYRFSGGVFRCPTCRFEVVLDRHGVHGLQ-RNLLVENIIDIYKQQQEGGGGSVTQETPIKPK 214

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A6H5KV73_9PHAE	1.050e-48	95.45	BRCT domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A3B4TF43_SERDU	4.440e-8	41.33	RING-type domain-containing protein n=1 Tax=Seriol...	[more]
A0A0S7L9T8_9TELE	4.100e-5	30.11	TRI47 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta...	[more]
A0A5A9P4U6_9TELE	5.400e-5	33.05	Tripartite motif-containing protein 54 n=3 Tax=Cyp...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6611	contig	Ecto-sp13_S_contig6611:3991..6216 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Stop	0
Start	1
Seed ortholog score	61.2
Seed ortholog evalue	6.6e-07
Seed eggNOG ortholog	38727.Pavir.J01478.1.p
Model size	639
KEGG ko	ko:K10683
KEGG Pathway	ko03440,map03440
Hectar predicted targeting category	other localisation
GOs	GO:0000151,GO:0000152,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010639,GO:0016020,GO:0016567,GO:0016740,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0031056,GO:0031057,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031436,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0035065,GO:0035066,GO:0035067,GO:0036211,GO:0042127,GO:0042304,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045717,GO:0045787,GO:0045833,GO:0045893,GO:0045922,GO:0045935,GO:0045944,GO:0046483,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051716,GO:0051726,GO:0060255,GO:0062012,GO:0062014,GO:0065007,GO:0070531,GO:0070647,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071944,GO:0080090,GO:0090068,GO:0090304,GO:0104004,GO:0140096,GO:1901360,GO:1901564,GO:1901983,GO:1901984,GO:1901985,GO:1902275,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905268,GO:1905269,GO:1990234,GO:2000112,GO:2000756,GO:2000757,GO:2000758,GO:2001141,GO:2001251,GO:2001252
Exons	3
EggNOG free text desc.	PHD-like zinc-binding domain
EggNOG OGs	37J3W@33090,3G75Y@35493,3I2TB@38820,3KV7M@4447,KOG4362@1,KOG4362@2759
Ec32 ortholog description	Zinc finger, RING/FYVE/PHD-type
Ec32 ortholog	Ec-06_004780.1
Cds size	639
COG Functional cat.	L
Best tax level	Poales
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03019,ko03036,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463911.0433428-CDS-Ecto-sp13_S_contig6611:3990..4229	1681463911.0433428-CDS-Ecto-sp13_S_contig6611:3990..4229	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6611 3991..4229 -
1681463911.0581944-CDS-Ecto-sp13_S_contig6611:4517..4735	1681463911.0581944-CDS-Ecto-sp13_S_contig6611:4517..4735	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6611 4518..4735 -
1681463911.0680683-CDS-Ecto-sp13_S_contig6611:6034..6216	1681463911.0680683-CDS-Ecto-sp13_S_contig6611:6034..6216	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6611 6035..6216 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6611.17462.1	prot_Ecto-sp13_S_contig6611.17462.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig6611 3991..6216 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig6611:3991..6216-
coding sequence from alignment at Ecto-sp13_S_contig6611:3991..6216-

protein sequence of mRNA_Ecto-sp13_S_contig6611.17462.1

>prot_Ecto-sp13_S_contig6611.17462.1 ID=prot_Ecto-sp13_S_contig6611.17462.1|Name=mRNA_Ecto-sp13_S_contig6611.17462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MTYSRSGDSRKQAMVDVDGLAGPGAGKIARQAIESIGSVADFIEIVKETA
GKHLKCCICFSILEDPVMLPCNHPLCRGCASQCFKESQRCPQCMTPIPNL
RMLQGRNKWIVHMVDKLKNSINDVGVSLTQHAPVPSKYRDKSPPKSGAAG
KAARERARARARASTGQAGFSSASCGSGSGGSGGGSRGRGRPTGRANAGT
SRGGAAAAAAAAA

mRNA from alignment at Ecto-sp13_S_contig6611:3991..6216-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig6611.17462.1 ID=mRNA_Ecto-sp13_S_contig6611.17462.1|Name=mRNA_Ecto-sp13_S_contig6611.17462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2226bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6611:3991..6216- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTACAGCCGGTCAGGTGACAGCAGAAAGCAGGCCATGGTCGATGT
GGATGGCCTTGCTGGGCCAGGCGCGGGGAAAATTGCGAGACAGGCGATCG
AGAGTATAGGCTCGGTTGCAGATTTCATCGAGATCGTGAAGGAAACGGCT
GGCAAGCACTTAAAGTGCTGCATTTGTTTCAGGTCAGTTGGCTCTTTCGC
TTCCCACACACTACTTGCCTCACCACGTGCTTTGAAAGATAACGCTCATT
GCCTCTCGCTCACACTGAACTGCGCATGGTTTAGCCAGGGCTAATTGCTC
ATTAATGCGAAAACAATACTCGATATTTCTGCAGTTGCAAGGCTGAAACA
CACTTTTGGTCTGGTTGTTTTGGTTTCACCCACTGCATCGATCGTAGCCT
GCAGCGCGGTGATACCCATTATCACTTGACAACGCCCAATGGAATACCAC
TGACCAAAGGAGCAGGGTAGCGCTAATGTCCTACTTTCATCCACAAAAGT
ACAACCCGGCAGCACGGCCAAACCTGTGTGCCTACGCCAAGACAGTGAGA
ACCCCCACGTGAACACCCCCACGTGAAAACCTCCACGTACATGTGAGATG
TTTCACGACGTAAGATACCATCCCCCCGGGGACCGATTTTCAAAACCCGA
CTTCTCTGCACTCTGCACCAAACCAGCAGCGATGTTGTCAAATGGTGGTG
TCGGAACCATCTCGTCGAGAACTTTCCAGGAACGGAAGATTTGATCTTCT
TTTCCTCGTCATGGCGGAGGAGTCGAGACTTGAAGTTCGTTCCAGGTGGT
GTGCACCTTCTGCGACCTACGGTCTACACGTAGACAGCTTGTAGATCGCC
TGCAGCAATGCTTGCGAAGCGGCAATGCTTGCAAAAGTTACCCACGGGGG
TGATATCGCTGTACGCTGCTCGGGAAACCGTTAAAACACAGGAAGCTTCC
GCTGACACTATGAATTCATTGCTAATCTATCGTCCTCTTATTTGTGGATA
GAGATGGATTTTGTTGTGTCATATCGACAAAAAAAAGATAGGATTGCACC
GAAGAGCGTGCGACTCACAGGTAGGGGTGATGCGGTAAAACTAGAAGTGC
GCCTCGCGCACACGGCGCGTATGGCAAAATGACACACACACACCAAGAGA
TGCAGAACCCAGTCCAACACTCTGGAGATCCACACACACATTCACATCAA
ATCCTTCCACCTCTGTGCACTTGGGTAAAACAAGTCGGCAGTAGAAGGAA
CAGCAGTAGAAGCAGTAGAGCACCAACGCAAGGCGGCCACGGCGGTATCT
TACAAGCTGCTTTTGTTCGGGTCTATGTTATGGTCGCCACAGGTGCGAGT
ACGCTTGTAACGACACCATGCACCACCGTCAACACACGGCACAGCAGCAG
CAGCAGAAGCTCTAACTGCCTGTTTGCCCTCGTTCGTTCGGACCTCTCCC
CGACGCCCCCCCCGGTTTCTCGAACACCCAGCATCCTGGAAGACCCCGTG
ATGCTGCCATGCAACCACCCCCTGTGCCGAGGCTGCGCTTCGCAGTGCTT
CAAGGAGAGCCAGCGGTGCCCTCAGTGCATGACCCCCATCCCCAACCTGC
GGATGCTCCAGGGGCGAAACAAGTGGATCGTGCACATGGTCGACAAGCTA
AAGAACTCTATCAACGACGTCGGGGTTAGCCTCACGCAGCACGCGCCAGG
TCAGTCTTTTCCGTCGTTATTTGCTGTTGGCGCGCGAGGTACGGCGGTGC
CCTGCGCTGCTACGGTGTCGTAGAGTTGTGAAGGAGATGCGGTTCGGATG
CAGTGGTCGTAGAGACTTGAAACGGGGTCCCGAACGCGTGACGACTGCTG
TTGGAGGTGGCTCGAAAACACGACGGACTTACATACAAACAATGCGAGTG
GTGGCTCTCTCATCATTTATGCCCGGGTCACATATGTTGGTCACCCAACC
CCCCCAAATCTCCCTCTTCCCCGTCGCCCCTTGCCAGTCCCATCCAAGTA
CCGGGACAAGTCGCCACCAAAGTCGGGGGCCGCGGGCAAGGCTGCGCGCG
AGCGAGCGCGGGCGCGGGCGCGGGCATCCACGGGACAAGCCGGTTTTTCT
TCGGCGAGCTGCGGGAGCGGAAGCGGCGGCAGCGGGGGCGGCAGCCGCGG
GCGAGGAAGGCCAACGGGAAGGGCCAACGCCGGCACGAGTAGAGGGGGGG
CGGCGGCGGCGGCGGCGGCGGCGGCG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6611:3991..6216-

>mRNA_Ecto-sp13_S_contig6611.17462.1 ID=mRNA_Ecto-sp13_S_contig6611.17462.1|Name=mRNA_Ecto-sp13_S_contig6611.17462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6611:3991..6216- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTACAGCCGGTCAGGTGACAGCAGAAAGCAGGCCATGGTCGATGT
GGATGGCCTTGCTGGGCCAGGCGCGGGGAAAATTGCGAGACAGGCGATCG
AGAGTATAGGCTCGGTTGCAGATTTCATCGAGATCGTGAAGGAAACGGCT
GGCAAGCACTTAAAGTGCTGCATTTGTTTCAGCATCCTGGAAGACCCCGT
GATGCTGCCATGCAACCACCCCCTGTGCCGAGGCTGCGCTTCGCAGTGCT
TCAAGGAGAGCCAGCGGTGCCCTCAGTGCATGACCCCCATCCCCAACCTG
CGGATGCTCCAGGGGCGAAACAAGTGGATCGTGCACATGGTCGACAAGCT
AAAGAACTCTATCAACGACGTCGGGGTTAGCCTCACGCAGCACGCGCCAG
TCCCATCCAAGTACCGGGACAAGTCGCCACCAAAGTCGGGGGCCGCGGGC
AAGGCTGCGCGCGAGCGAGCGCGGGCGCGGGCGCGGGCATCCACGGGACA
AGCCGGTTTTTCTTCGGCGAGCTGCGGGAGCGGAAGCGGCGGCAGCGGGG
GCGGCAGCCGCGGGCGAGGAAGGCCAACGGGAAGGGCCAACGCCGGCACG
AGTAGAGGGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCG