prot_Ecto-sp13_S_contig6611.17462.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6611.17462.1
Unique Nameprot_Ecto-sp13_S_contig6611.17462.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length213
Homology
BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Match: A0A6H5KV73_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV73_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.050e-48
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0
Query:   68 MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQHAPVPSKYRDKSPPKSGAAGKAARE 155
            MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQH+PVPSKYRD   PKSGAAGKAARE
Sbjct:    1 MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQHSPVPSKYRDNPSPKSGAAGKAARE 88          
BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Match: A0A3B4TF43_SERDU (RING-type domain-containing protein n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4TF43_SERDU)

HSP 1 Score: 59.7 bits (143), Expect = 4.440e-8
Identity = 31/75 (41.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query:   54 LKCCICFSILEDPVMLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSL 128
            L C IC S  + PV  PC H  C+ C    +KE+QRCPQC TPIP    L+ +N  +  +V+    S N    SL
Sbjct:   18 LTCSICLSTFDCPVTTPCGHNFCQDCLLATWKETQRCPQCRTPIPTKPELK-KNTVLSAVVETFNLSSNKTEDSL 91          
BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Match: A0A0S7L9T8_9TELE (TRI47 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7L9T8_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 4.100e-5
Identity = 28/93 (30.11%), Postives = 46/93 (49.46%), Query Frame = 0
Query:   43 IEIVKETAGKHLKCCICFSILEDPVMLPCNHPLCRGCASQCFKESQR-----CPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQ 130
            I +  +T+  +  CC+C S+L DPV +PC H  C  C    + E+       CPQC        +L+  N  +  + +K+K S  +V +S +Q
Sbjct:   51 IMMADQTSPDYFSCCLCQSLLRDPVAIPCGHSFCMDCIDGYWNEADYTGIYICPQCKITFTQRPVLRP-NATLTMVAEKIKKSGLNVNLSASQ 142          
BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Match: A0A5A9P4U6_9TELE (Tripartite motif-containing protein 54 n=3 Tax=Cypriniformes TaxID=7952 RepID=A0A5A9P4U6_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 5.400e-5
Identity = 39/118 (33.05%), Postives = 53/118 (44.92%), Query Frame = 0
Query:   34 ESIGSVADFIEIVKETAGKHLKCCICFSILEDPVM-LPCNHPLCRGCASQCFKESQ---------RCPQCMTPIP----NLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQHAPVPSK 137
            ESI  V + +    E+  K L C IC  +   PV+ LPC H LCRGCAS  +             RCP C   +      +  LQ RN  + +++D  K      G S+TQ  P+  K
Sbjct:   98 ESILPVMEALRGSMESLEKQLSCPICLDMFTKPVVILPCQHNLCRGCASDLYDSRNPYRFSGGVFRCPTCRFEVVLDRHGVHGLQ-RNLLVENIIDIYKQQQEGGGGSVTQETPIKPK 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6611.17462.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KV73_9PHAE1.050e-4895.45BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A3B4TF43_SERDU4.440e-841.33RING-type domain-containing protein n=1 Tax=Seriol... [more]
A0A0S7L9T8_9TELE4.100e-530.11TRI47 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A5A9P4U6_9TELE5.400e-533.05Tripartite motif-containing protein 54 n=3 Tax=Cyp... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 56..93
e-value: 4.5E-5
score: 32.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 56..93
score: 11.073
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 54..98
e-value: 3.3E-8
score: 33.3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 47..114
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 39..135
e-value: 2.6E-16
score: 61.4
IPR031099BRCA1-associatedPANTHERPTHR13763BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1coord: 48..158
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 71..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6611contigEcto-sp13_S_contig6611:3991..6216 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6611.17462.1mRNA_Ecto-sp13_S_contig6611.17462.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6611 3991..6216 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6611.17462.1 ID=prot_Ecto-sp13_S_contig6611.17462.1|Name=mRNA_Ecto-sp13_S_contig6611.17462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MTYSRSGDSRKQAMVDVDGLAGPGAGKIARQAIESIGSVADFIEIVKETA
GKHLKCCICFSILEDPVMLPCNHPLCRGCASQCFKESQRCPQCMTPIPNL
RMLQGRNKWIVHMVDKLKNSINDVGVSLTQHAPVPSKYRDKSPPKSGAAG
KAARERARARARASTGQAGFSSASCGSGSGGSGGGSRGRGRPTGRANAGT
SRGGAAAAAAAAA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR031099BRCA1-associated
IPR017907Znf_RING_CS