mRNA_Ecto-sp13_S_contig12044.1746.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12044.1746.1
Unique NamemRNA_Ecto-sp13_S_contig12044.1746.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12044.1746.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 553 bits (1424), Expect = 1.640e-178
Identity = 282/302 (93.38%), Postives = 285/302 (94.37%), Query Frame = 1 
Query:    4 RMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHAPPPMKDPLQRRDPLSLQDHEERGHQEEGGGWGDAKWTERERSYGDVGDQRLELVLQAVFIECRSMLLYANVTTAGGPCQASLLLACLLNMECSWCGGQDGMGCVPLEDRPVKRGGRRGDAASSCQTGSCCPLGCNGVGECDFFSATCSCPWLYAGSSCADVSTKGAVALSLSLSALLLVMLSLACGRSSQRKQVEAVMGTLQELKRGLLSDTDGSIGDDDVNLSPFGGKGNRMAFSIGGRGQLPTGR 909
            RMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHAPPPM DPLQ RDPLSLQDHEERG      GWGDAKWTERERSYGDVGDQRLELVLQAVFIECRSMLLYANVTTAGGPCQA     CLLNMECSWCG QDGMGCVP+E+RPVKRGGRRGDAA SCQTGSCCPLGCNGVGECDFFSATCSC WLYAGSSCADVSTKGAVALSLSLSALLLVMLSLACGRSSQRKQVEAVMGTLQELKRGLLSDTDGSIGDDDVNL+PFGGK NRMAFSIGGRGQLPTGR
Sbjct: 1410 RMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHAPPPMPDPLQPRDPLSLQDHEERG------GWGDAKWTERERSYGDVGDQRLELVLQAVFIECRSMLLYANVTTAGGPCQA-----CLLNMECSWCGDQDGMGCVPVEERPVKRGGRRGDAALSCQTGSCCPLGCNGVGECDFFSATCSCRWLYAGSSCADVSTKGAVALSLSLSALLLVMLSLACGRSSQRKQVEAVMGTLQELKRGLLSDTDGSIGDDDVNLAPFGGKSNRMAFSIGGRGQLPTGR 1700
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BLAST of mRNA_Ecto-sp13_S_contig12044.1746.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 7.360e-64
Identity = 118/138 (85.51%), Postives = 121/138 (87.68%), Query Frame = 1 
Query:    1 DRMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHAPPPMKDPLQRRDPLSLQDHEERGHQEEGGGWGDAKWTERERSYGDVGDQRLELVLQAVFIECRSMLLYANVTTAGGPCQASL 414
            +RMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWH PPPM  PLQ RDP SLQD EE      G G GDAKWTERE  YGD+GDQRLEL LQAVFIECRSMLLYANVTTAGGPCQAS+
Sbjct:  889 ERMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHDPPPMPAPLQPRDPPSLQDDEEH-LLFAGSGQGDAKWTERELRYGDLGDQRLELFLQAVFIECRSMLLYANVTTAGGPCQASM 1025
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12044.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTH4_ECTSI1.640e-17893.38Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K5Q8_9PHAE7.360e-6485.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12044contigEcto-sp13_S_contig12044:230..4952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score553.9
Seed ortholog evalue4.7e-155
Seed eggNOG ortholog2880.D7FTH4
Model size921
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Cds size915
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12044.1746.1prot_Ecto-sp13_S_contig12044.1746.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12044 230..4946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462639.8530095-CDS-Ecto-sp13_S_contig12044:229..3411681462639.8530095-CDS-Ecto-sp13_S_contig12044:229..341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12044 230..341 -
1681462639.8671095-CDS-Ecto-sp13_S_contig12044:701..7761681462639.8671095-CDS-Ecto-sp13_S_contig12044:701..776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12044 702..776 -
1681462639.8753223-CDS-Ecto-sp13_S_contig12044:1460..15631681462639.8753223-CDS-Ecto-sp13_S_contig12044:1460..1563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12044 1461..1563 -
1681462639.8834057-CDS-Ecto-sp13_S_contig12044:2043..21311681462639.8834057-CDS-Ecto-sp13_S_contig12044:2043..2131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12044 2044..2131 -
1681462639.8926759-CDS-Ecto-sp13_S_contig12044:3149..32721681462639.8926759-CDS-Ecto-sp13_S_contig12044:3149..3272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12044 3150..3272 -
1681462639.9082994-CDS-Ecto-sp13_S_contig12044:4039..42091681462639.9082994-CDS-Ecto-sp13_S_contig12044:4039..4209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12044 4040..4209 -
1681462639.9198217-CDS-Ecto-sp13_S_contig12044:4702..49461681462639.9198217-CDS-Ecto-sp13_S_contig12044:4702..4946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12044 4703..4946 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462639.9296489-UTR-Ecto-sp13_S_contig12044:4946..49521681462639.9296489-UTR-Ecto-sp13_S_contig12044:4946..4952Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12044 4947..4952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12044.1746.1

>prot_Ecto-sp13_S_contig12044.1746.1 ID=prot_Ecto-sp13_S_contig12044.1746.1|Name=mRNA_Ecto-sp13_S_contig12044.1746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
MKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGG
GWHAPPPMKDPLQRRDPLSLQDHEERGHQEEGGGWGDAKWTERERSYGDV
GDQRLELVLQAVFIECRSMLLYANVTTAGGPCQASLLLACLLNMECSWCG
GQDGMGCVPLEDRPVKRGGRRGDAASSCQTGSCCPLGCNGVGECDFFSAT
CSCPWLYAGSSCADVSTKGAVALSLSLSALLLVMLSLACGRSSQRKQVEA
VMGTLQELKRGLLSDTDGSIGDDDVNLSPFGGKGNRMAFSIGGRGQLPTG
REGGG
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mRNA from alignment at Ecto-sp13_S_contig12044:230..4952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12044.1746.1 ID=mRNA_Ecto-sp13_S_contig12044.1746.1|Name=mRNA_Ecto-sp13_S_contig12044.1746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12044:230..4952- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGGATGAAGATGAACCGAAAGTGGGCGATCGTCCGCTTCGGCACCCT
AGACGCCGCCCGGAACGTCGACACGGGGTCCCTCTCGGTGCGCGGCCCTC
CCGGGGTGTCTATGGCGCTAGCGATGCAGAACGTCACTCTGAAAGGAGGA
GGCGGGGGATGGCACGCCCCCCCGCCGATGAAGGACCCCCTGCAGCGACG
GGACCCCCTCAGTCTGCAGGATCACGAAGAACGTGGGCATCAAGAAGAAG
GTGCAAGGGGGTCGTGATGGGATATGGTCGACGTTTGTTTACGTTTGAGA
GAAAGATCTTGACGAGATACTCTCCACAAGCCATCGGCGTTGACGCTGTT
TGGCCTTTTTGACTGTGGAGCAATCGAGCGTTGATGGTCGGTGTCGGGGT
TGTGCAAAGACTCCCAATGATCGTGCTTTATAACCGTATTTTTATATTGA
ACGTTTCCGGGCTTGGCAACCGTGTGGTTGAGGGGGGACTCGACCTATGC
CTACGGAGGTGGGCTCTAGGATGTGTAACTGGCAATCTTTGGGCACGTGA
AGCTGCTGACATCGAATAGCCTGCCCGTCGGTTGGCATCCGACGAAACAG
AGACAAATTAAAGTGATCTGTAACCTTATTACAAAGGACTATCTCGGGTT
ATGTAGCTTGGACACGCCGGACCCCCCCCTCCCTCTAGTCTGACGTCTGT
GCCCATCTCCGTGCCTCGAACTGCAAAGACTTGATGTTCACAGGCGGTGG
GTGGGGTGACGCGAAATGGACGGAGAGGGAACGGAGTTATGGCGACGTCG
GTGATCAGCGGTTGGAGTTGGTTCTCCAAGCGGTGTTCATCGAGTGCCGG
AGCATGCTGCTTTACGCTAACGTCACCACAGCGGGAGGGCCCTGCCAGGC
GAGTCTTCTTCTTGTTCTTTGTTTCATGTGCTTCTTCAGTTGTTCTGAAT
CTCTCATGGTGGTATGCACCATGGGTCAGGTATGTACAGCCCTTACTAGG
TGTTTCAGCCCTAGAAGAGATGGAAACCGTTTTGATGTCAAGCGTACCAA
AAACCACAACAAACGCCAGCACCAGCAACTCTGCCATGTATCGTCGTGGC
AAGGGGATCCCTCCTCGTTTTTGTGCTGGTAGCAGCTTTAAGCCGGGGGT
GGTGGCGTAAAAAACATTCTTAGCCTTGACGACCCCCCCCCCAGCTTAGC
CGTAGCGGCTATCGATATCCGGGCTTTTTCGTCGTGCAATGCCAAACTTC
TAGATTTTTTTATTCTATGGGTGGACAGGTGCGCACGCCCTGTCTTTGTC
TGACAGCGGTGGGTGGGCCATCACGTCATGAATTGCATGTGGCGGGGAAA
CAGCTCGCTGTCGGCGGTGGCGGCGTTTGTGTTGACGCTGGCGAGGCTGA
CCATGTTGTGGTTGTTGCCGTGGTTGTTGTTGTTGTTGTTGTTGGCTACC
ATGCTGAGTGCTCCACTCACTCACCTGTCGTGCCCGCTTTTTATCGCCTT
TTTATCGCCTCTCCACAGCGCGTTTTGAAAAGGGACTTCCAGGCCTACAG
AGTTTTTTTTTGAACAGTTTTTTTAGGGTTAGACATACCCCCATTGCCTC
CAACATCGCATACGGGAGTTCATGGTCTTGTCCAACTCCTTCCGTCCTCG
ACCTGTGACGTCGTCCCCCCCCCCCCCCAGGCATGCCTTTTGAACATGGA
GTGCTCCTGGTGTGGAGGCCAAGACGGCATGGGGTGTGTGCCGTTGGAAG
ACCGACCCGTAAAGCGGGGCGGGCGGAGGGGCGACGCTGCATCGTCTTGT
CAGGTGGGAGACGATGTGCAGTCTATCCGATGCTACACGAACGCTGCAGA
GGTGCCATTACGATGACGTCCAAGAGGACGTTTTGTTCGCCAGAGGCTAG
TTTGTTTTGTTTCTCTTGTTTTCCTCTGTGGCTTATCCCCAACAGGGACT
TTGTGGATATAACTGGGTGGTATTCTAAAATCCAGTACCAGGATTTAGGT
CAAATAAAACAAAGTAGTTTCGGTTGTTGAGCCTAGGTTCCATGGCTCCC
AGGATCTTCAGGTGGTGGCACGTCCTGTGTGATGGCTGGTTTTCCCCCTA
GGGGCGTTGACTTTTCTTGACGACGCAACGTGCGAACGGTCACGCTTTCA
ACGACGAAGTCGATGCCCATGAACTTGTTGTGAACCTTTGTACATCGGAA
GTTGTCGTGAACCTTGTTTTGGGAACAAGTTGATTGTGAGCCGAGCGCTA
CTGTATGACACCGAGGGCCTCGCTTCCGATCAGCGTATATGTTTGTTGGG
GCACTAGTGGTGGCATCACGGTGAAAACGACGTCTCCCGGCTGCAGGCGC
TCTTCTAGATAGAAATGGCGGCTTCGATTAAGTGGGGGTTGAGCCCCGTC
CGGAGCGGTGTCATCACGAGCTGGAATAATGCTGTTGTACGAGGTGCACA
ACACTCTTGCGCACCTTGTTGTCTGTCCATGGTTCTCACAGAAGATCATT
CGAGTTCATCTCACTCCGTACGTTGCATGAAGTCCACGATGATTGTCTGG
AGTGGTTCGCAACAAAATTGGCACGAGCTACGAGTGTTTGTTGCCATCCT
CGTGGAACTGTGGATAACAGGCTCAACGGTTCGGTTAGGTGGCCGTGTCG
TGTGCCTGATTACATCCTCTCCAGGACACTTCACAGCACGAAACAATAGC
CACCACTCTTCGAGATTGTTTGCCGTTCGAAGGGATGTGTTGAAATATTT
TCAGCTGCCCGTAATTTAATCTTATCGATATCTTTGTTTCTCGGCCATTT
TGTTCGTTGTGTTTTCGTCAGACGGGTAGCTGTTGCCCGCTTGGCTGCAA
CGGCGTCGGCGAGTGCGATTTCTTTTCCGCGACTTGCTCTTGCCCCTGGC
TCTACGCAGGTGCGTTCTCCCCGTTGCATTCATAAGAGCTTTCGGGCACG
TCTTCGGTGCGGCGGTAATCGTCTTGTATTATGTAGAAGCACGTAGTAAG
GCTGTCGCCATGCAGGTCGCATGGGTTTCCTGGTAAACGTACTATGTGTA
GTCGCAGCGGGTTGTGGGGGTTTTGCCCCTCTTCTCCTCTCTTATGCTCT
TTCTGGTTCTGAAGTGAAGAGATTAACAATTCTGCGGTGGGAAGGGAGGA
AGGCACAGCACATGCTGAAGCAGGATCAGGATAAGACGTCGAGTGCTTCC
GTTGCTGTTGTTGTTGTTGTTGTGTCGTCCTACCGCCAAATTTGGTGGTG
TTGGGCCGTCGTCGTGGTTTCAATTGCAAACCCTCACCTAATGCCCTACT
TCGTGCTTCATTACCCTACGGGTGGTGGTTTTTTCTGCCCGCGGCGCGTT
TCTATTCTCTGTCGGTTGCTCTCGGTTGCCGTCCACCAGGTTCCTCCTGC
GCCGACGTCAGCACCAAGGGAGCCGTAGCGCTATCGCTATCGCTTTCCGC
CCTCTTGCTGGTGATGCTCTCGCTCGCCTGCGGTCGCTCAAGGTGCGCTC
TTTTTCCGGTCTCCTTGCCTCCGCTCTTCGTTAGTCGCGCTTGTGTGATG
TGGGCTACTCTACCCGTGAACGCACGAAGTTGTCGTTGCGTCAAGTGGGT
TCGGTCGGCTGCTTGTTCTGATGTGTTTTCTTTCGTACACGAACACATCA
AATTCATTTCAAGATTTCGGCATATATTAGAAATTAATTCACGCAAGATC
TTGTTGTATGATTACCTTGATTTCCACGGTTTGCATCGTCTCGCTCTCTT
GACCGTGCGCGTTCGCTTGTCAGTGGTTGTTAATATTCTGTCGTTGTTGT
TGCTGTCTTTTTACTTTTCCTGTCCACCCTCCTCACGATCATGTTGAGGA
CGCTCTCCTGTAGTCCATACCTCATGCAAATATCGTGATCGCATCGTATT
CCAAGTTCGTATGAGTGGGGTTCGTGTCTCCCTCTCACCGTCTTTCGTCG
TATACGTATGGTCCGCGTCTGCAAAACCAAGATTGAAGTACCATCCAAAC
TTCTACAATACCTTCACCGGGCGTTACAGACAACCAAGAGCTGGAACGTT
AGTGACGTCGATGACGTTGATATCCTACAAGCCAACACGCTCGTCCTACA
TCGTTGCCTCGACGGAATGTTTTTTGCTGGCGGTGCTAACCGGGCGCATG
ATTATTATCGTTCCGCTTTGCCACAGCCAGCGGAAGCAGGTGGAGGCGGT
GATGGGCACGCTGCAGGAGCTCAAGCGAGGCCTGCTCTCCGACACTGACG
GGTGAGAGTTATACCACTCATTTTCGGACGTCTGTCCAACTAACCAGCCC
TACAACCTCGACGGCAGTTCCCGCAATGTGGTTTGAACCGTCCCGCCTTC
CGGGATGGCGGCGCCCTTCAGCGATTCTCCTTGCTGCCTCAGCGGTGCCC
CCGGCCCACCCAGCCATCCACCGTCCTCCTCTTTTTGCCCGCACAACCCC
CCATCACCTTTCGTCGTATGCATTGGTGTTTGGACTTTCGGGCTTCCTGC
CCCTCACCGCTCTGCCCTGTGTACATGTAATGGCATCCTCCCAGAGGAAA
ACACCCGTCCCCTCAGTGTGCAATGAAATCTGTGATTCGTCAACAACCCC
GCCGTGGGCAGGTCTATCGGAGATGACGACGTCAACTTGTCGCCTTTCGG
GGGAAAAGGCAACAGGATGGCGTTTTCGATCGGGGGACGGGGACAGCTTC
CGACAGGAAGGGAGGGGGGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12044:230..4952-

>mRNA_Ecto-sp13_S_contig12044.1746.1 ID=mRNA_Ecto-sp13_S_contig12044.1746.1|Name=mRNA_Ecto-sp13_S_contig12044.1746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12044:230..4952- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATGAACCGAAAGTGGGCGATCGTCCGCTTCGGCACCCTAGACGC
CGCCCGGAACGTCGACACGGGGTCCCTCTCGGTGCGCGGCCCTCCCGGGG
TGTCTATGGCGCTAGCGATGCAGAACGTCACTCTGAAAGGAGGAGGCGGG
GGATGGCACGCCCCCCCGCCGATGAAGGACCCCCTGCAGCGACGGGACCC
CCTCAGTCTGCAGGATCACGAAGAACGTGGGCATCAAGAAGAAGGCGGTG
GGTGGGGTGACGCGAAATGGACGGAGAGGGAACGGAGTTATGGCGACGTC
GGTGATCAGCGGTTGGAGTTGGTTCTCCAAGCGGTGTTCATCGAGTGCCG
GAGCATGCTGCTTTACGCTAACGTCACCACAGCGGGAGGGCCCTGCCAGG
CGAGTCTTCTTCTTGCATGCCTTTTGAACATGGAGTGCTCCTGGTGTGGA
GGCCAAGACGGCATGGGGTGTGTGCCGTTGGAAGACCGACCCGTAAAGCG
GGGCGGGCGGAGGGGCGACGCTGCATCGTCTTGTCAGACGGGTAGCTGTT
GCCCGCTTGGCTGCAACGGCGTCGGCGAGTGCGATTTCTTTTCCGCGACT
TGCTCTTGCCCCTGGCTCTACGCAGGTTCCTCCTGCGCCGACGTCAGCAC
CAAGGGAGCCGTAGCGCTATCGCTATCGCTTTCCGCCCTCTTGCTGGTGA
TGCTCTCGCTCGCCTGCGGTCGCTCAAGCCAGCGGAAGCAGGTGGAGGCG
GTGATGGGCACGCTGCAGGAGCTCAAGCGAGGCCTGCTCTCCGACACTGA
CGGGTCTATCGGAGATGACGACGTCAACTTGTCGCCTTTCGGGGGAAAAG
GCAACAGGATGGCGTTTTCGATCGGGGGACGGGGACAGCTTCCGACAGGA
AGGGAGGGGGGAGGC
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