mRNA_Ecto-sp13_S_contig6611.17463.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6611.17463.1
Unique NamemRNA_Ecto-sp13_S_contig6611.17463.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6611.17463.1 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.780e-56
Identity = 140/172 (81.40%), Postives = 141/172 (81.98%), Query Frame = 3 
Query:  258 MDQSSVAAAGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKSXXXXXXXXTNSDKAVDGKENSSVNSTGSRDLASRKVFSERGNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSIVSEVERRAAALREAIDAHRRDNEARRAMSDATRQQTAQLAATLSALPEHLP 773
            MDQSSVAAAGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKS    XXXX  SDKAVDGKENSSVNST SRDLA RKV SE GN+  XXXXXXXXX                   SSIVSEVERRAAALREAIDAHRRDNEARRAMSDATRQQTAQLAATLSALPEHLP
Sbjct:    1 MDQSSVAAAGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKSSTSTXXXXX-SDKAVDGKENSSVNSTASRDLAGRKVLSESGNS--XXXXXXXXXGAGHTNHGDLEALRDLRNLSSIVSEVERRAAALREAIDAHRRDNEARRAMSDATRQQTAQLAATLSALPEHLP 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6611.17463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVT8_9PHAE2.780e-5681.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6611contigEcto-sp13_S_contig6611:6396..7168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size774
Hectar predicted targeting categoryother localisation
Exons1
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463910.9224837-UTR-Ecto-sp13_S_contig6611:6395..66521681463910.9224837-UTR-Ecto-sp13_S_contig6611:6395..6652Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6611 6396..6652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463910.9348416-CDS-Ecto-sp13_S_contig6611:6652..71681681463910.9348416-CDS-Ecto-sp13_S_contig6611:6652..7168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6611 6653..7168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6611.17463.1prot_Ecto-sp13_S_contig6611.17463.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6611 6653..7168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6611.17463.1

>prot_Ecto-sp13_S_contig6611.17463.1 ID=prot_Ecto-sp13_S_contig6611.17463.1|Name=mRNA_Ecto-sp13_S_contig6611.17463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MDQSSVAAAGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKSSSSSS
SSSTNSDKAVDGKENSSVNSTGSRDLASRKVFSERGNNNNDNNNSNTARG
AGHTNHGDLEALRDLRDLSSIVSEVERRAAALREAIDAHRRDNEARRAMS
DATRQQTAQLAATLSALPEHLP
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mRNA from alignment at Ecto-sp13_S_contig6611:6396..7168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6611.17463.1 ID=mRNA_Ecto-sp13_S_contig6611.17463.1|Name=mRNA_Ecto-sp13_S_contig6611.17463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=773bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6611:6396..7168+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGCGCATATTTCTAGTCGGCTCGTCAATTTTTGGGATTCTTTTCTG
ACAAGAGAAAGCGTTGTCTTCCTCTCTGCATGCAGGAAAAAGCCCAACCG
TCACTTATATCCTGGACTGTAGGAAGACAGCGCGAGCAGCGGAAAGAGCA
AGCCGTGATACACCGAGGGCAGAGGGCAGGAACTTGTTAGCAAGGAAGGG
GCGCACGCGCGCGAGGGAGAGGAGCCCCAAAGGAGAGGTGGTTTGGCTCG
GTCCAAGATGGACCAGTCTTCCGTGGCTGCAGCGGGTGCAGCCCTGGTGG
CGTCGGTCGGGAACATGACGACGTCCGCGACGAACAAGCTGCAGGATGTC
TCCCGGAAGGTCGCGCTGGCAAGGTTGCTGGACGACAAGAGCAGCAGCAG
CAGCAGCAGCAGCAGCACCAATAGCGACAAAGCCGTCGACGGCAAGGAAA
ACAGCAGCGTAAACAGCACTGGAAGCCGAGATCTCGCGAGCAGGAAAGTG
TTCTCGGAACGCGGCAACAACAACAACGACAACAACAACAGCAACACCGC
CAGAGGAGCAGGCCACACGAATCACGGCGACCTCGAGGCCTTGCGAGACC
TGCGCGACCTCAGCTCCATCGTGTCCGAAGTCGAGCGGAGGGCGGCGGCG
TTACGCGAAGCCATCGACGCCCACCGTCGAGACAACGAGGCTCGTCGCGC
CATGTCCGACGCGACTCGGCAGCAGACCGCGCAGCTAGCCGCCACCTTAT
CGGCGCTCCCAGAACACCTCCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6611:6396..7168+

>mRNA_Ecto-sp13_S_contig6611.17463.1 ID=mRNA_Ecto-sp13_S_contig6611.17463.1|Name=mRNA_Ecto-sp13_S_contig6611.17463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6611:6396..7168+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCAGTCTTCCGTGGCTGCAGCGGGTGCAGCCCTGGTGGCGTCGGT
CGGGAACATGACGACGTCCGCGACGAACAAGCTGCAGGATGTCTCCCGGA
AGGTCGCGCTGGCAAGGTTGCTGGACGACAAGAGCAGCAGCAGCAGCAGC
AGCAGCAGCACCAATAGCGACAAAGCCGTCGACGGCAAGGAAAACAGCAG
CGTAAACAGCACTGGAAGCCGAGATCTCGCGAGCAGGAAAGTGTTCTCGG
AACGCGGCAACAACAACAACGACAACAACAACAGCAACACCGCCAGAGGA
GCAGGCCACACGAATCACGGCGACCTCGAGGCCTTGCGAGACCTGCGCGA
CCTCAGCTCCATCGTGTCCGAAGTCGAGCGGAGGGCGGCGGCGTTACGCG
AAGCCATCGACGCCCACCGTCGAGACAACGAGGCTCGTCGCGCCATGTCC
GACGCGACTCGGCAGCAGACCGCGCAGCTAGCCGCCACCTTATCGGCGCT
CCCAGAACACCTCCCG
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