prot_Ecto-sp13_S_contig6609.17456.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6609.17456.1
Unique Nameprot_Ecto-sp13_S_contig6609.17456.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length275
Homology
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: D7FJJ9_ECTSI (Ribosomal RNA-processing protein 43 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ9_ECTSI)

HSP 1 Score: 518 bits (1334), Expect = 2.930e-185
Identity = 265/274 (96.72%), Postives = 270/274 (98.54%), Query Frame = 0
Query:    1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVRIQS 274
            MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQA VLSTFV+NSIVESGALVLTDLAIDDG+FAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPT LVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVT VST+EGKVCGVHKPGGSCASG+QLNECLQLCQQHAKQ+TQTL AAVRIQS
Sbjct:    1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTQLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTVVSTSEGKVCGVHKPGGSCASGKQLNECLQLCQQHAKQLTQTLAAAVRIQS 274          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A836C8N5_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N5_9STRA)

HSP 1 Score: 257 bits (656), Expect = 7.700e-82
Identity = 143/281 (50.89%), Postives = 182/281 (64.77%), Query Frame = 0
Query:    1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDD-EIFVTEDTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAV-STAEGK----------VCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAA 269
            MEVEAFQ+LDP+ FYR+F+  GVRPDGR L+ VR ++V  GVL+   V ASALV LG TKV+ GI+LQVG PS+  P CG ++V V LTPL SS FS GRPSEQAQ L   +R+ +  S      DL I+   FAW+LC+D+ CLS++GN ADA L++    L+RL+LP T    D E+ V E   TPL V  VP+PLT GVF+G ++ADPSLLEE+L+   +T V S  EGK          VC VHK GG+C +   L   L L + HA++V   L  A
Sbjct:    1 MEVEAFQKLDPQTFYRKFLSEGVRPDGRGLQEVRDVAVSCGVLTAPHVAASALVTLGDTKVVTGITLQVGQPSQAEPGCGDVEVSVHLTPLCSSMFSVGRPSEQAQALEALIRDVLTASRPFRREDLLIEARRFAWRLCIDMYCLSYEGNAADAALLSVAACLLRLRLPPTVITPDGEVLVAEGEGTPLPVSHVPLPLTFGVFEGALVADPSLLEEDLVAAALTVVQSLDEGKGGSGGGGAARVCAVHKAGGACVAPALLARALALGRSHAQRVLPVLRGA 281          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI00074FE3AF (exosome complex component RRP43 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FE3AF)

HSP 1 Score: 186 bits (473), Expect = 1.620e-54
Identity = 109/274 (39.78%), Postives = 155/274 (56.57%), Query Frame = 0
Query:    1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 271
            M    F+ ++P  +YRRF+K   RPDGREL   R  +V+VG ++      SALV LG+  V+ GI  +   P  ++   G +   V L PL SS+F  G P E+AQ  S F+ + I  S  +   DL I DG  AW L  DI+CL +DGNL DA + A + AL  +QLP  R I++E  + E      T L VR+ PV  +  +FD ++I DP+  EE+L T  VT V+  EGK+C VHKPGGS   G +L +C+   +   K+V + L+  ++
Sbjct:    1 MAAGGFRTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSITT--ADGSALVKLGNMTVICGIKAEFAAPPVDSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFMADLIENSQVVRKEDLCIVDGKLAWVLYCDIICLDYDGNLLDACVCALLAALKNVQLPAVR-INEETGLAEVNLKEKTALTVRKEPVAASFVLFDSLVIVDPTAEEEDLATGTVTIVTDEEGKLCSVHKPGGSALMGAKLQDCIGRAKTRHKEVKKLLDTLIK 271          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A803TXF1_ANOCA (Ribosomal RNA-processing protein 43 n=2 Tax=Iguania TaxID=8511 RepID=A0A803TXF1_ANOCA)

HSP 1 Score: 184 bits (467), Expect = 1.330e-53
Identity = 103/270 (38.15%), Postives = 155/270 (57.41%), Query Frame = 0
Query:    5 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 271
             F+ ++P  +YRRF+K   RPDGR+L   R  ++++G ++      SALV LG+T V+ GI  +   P  ++   G +   V L PL SS+F  G P E+AQ  S FV + I  S  ++  DL I DG  AW L  DI+CL +DGNL DA + A + AL  +QLP    I++E  + E       PL +R+ PV  +  +FD ++I DP+  EE+L T  +T V+  EGK+C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    6 GFRTVEPVEYYRRFLKENCRPDGRDLGEFRTTTINIGSITT--ADGSALVKLGNTTVVCGIKAEFAAPLADSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFVADVIENSQVVMKEDLCIVDGKIAWVLYCDIICLDYDGNLLDACMCAFLAALRNVQLPAVT-INEETGLAEVNLKEKIPLTIRKEPVATSFILFDTVMIVDPTAEEEDLATGMLTIVTDEEGKLCSVHKPGGSALTGAKLQDCISRATARYKEVKKLIDKVIK 272          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI00115C7504 (LOW QUALITY PROTEIN: exosome complex component RRP43 n=2 Tax=Pipridae TaxID=114313 RepID=UPI00115C7504)

HSP 1 Score: 184 bits (466), Expect = 1.820e-53
Identity = 103/271 (38.01%), Postives = 161/271 (59.41%), Query Frame = 0
Query:    5 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 271
            AF+ ++P  +Y+RF+K   +PDGREL   R  +V++G ++      SALV LGST V+ G+  ++  P+ ++   G +   V+L  L S +F SG P E+AQ  S F+ + I  S  +V  DL I +G  AW L  DI CL +DGNL DA++ A + AL  +QLP    I++E  ++E      TPL++R+ PV  +  VFD  ++I DP+  +E+L T  VT V+  EG++C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 AFKTVEPLEYYKRFLKENCQPDGRELGEFRATTVNIGSITT--ADGSALVKLGSTTVICGVKSELAAPAADSANKGYIVPNVELPSLCSERFRSGPPGEEAQAASQFIADMIENSQMIVKEDLCIANGKLAWVLYCDIXCLDYDGNLLDASVFALLAALKNVQLPSVI-INEETGLSEVNLKQKTPLIIRKHPVATSFAVFDNTVLIVDPTAKKEDLATGTVTTVTDEEGRLCSVHKPGGSLLTGAKLQDCITRAITRHKEVKKLIDKVIK 271          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI0009E32917 (exosome complex component RRP43-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E32917)

HSP 1 Score: 182 bits (463), Expect = 4.990e-53
Identity = 110/261 (42.15%), Postives = 153/261 (58.62%), Query Frame = 0
Query:    6 FQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFV---TEDTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQV 262
            F+   P  +YR+F+K  VRPDGR L   R   ++VG +S    + SALV LG+T V+ G+  +   PS+  P  G +   V L PL SS+F  G PSEQAQVLS FV + I     + L +L I +G  +W L +D++CLS+DGN+ DA L+A+M AL   QL   + ID+E      +E+   PL +++ PV  T GVFD  ++ ADP+  EE LLT  VT V T + K+  VHKPGGS     +L EC +   +  K+V
Sbjct:    5 FKTAQPLEYYRQFLKEDVRPDGRALLEFRKTILNVGSIST--AEGSALVKLGNTTVVCGVKAEFAVPSQENPKHGFIVPNVDLPPLCSSRFRPGPPSEQAQVLSQFVADVISNCEPINLEELCIVEGKLSWVLYVDMMCLSYDGNITDACLVASMAALQNTQLYSVK-IDEETQTPVPSEEREVPLNLKKHPVSATFGVFDDTVLFADPTDEEENLLTGVVTVVVTDDDKIAAVHKPGGSPLPDDKLQECFKKAVRRGKEV 262          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI000522B703 (exosome complex component RRP43 n=1 Tax=Opisthocomus hoazin TaxID=30419 RepID=UPI000522B703)

HSP 1 Score: 183 bits (464), Expect = 9.430e-53
Identity = 103/273 (37.73%), Postives = 160/273 (58.61%), Query Frame = 0
Query:    3 VEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 271
            VE  + ++P  +YRRF+K   RPDGREL   R  +V++G ++      SALV LG+T V+ G+  ++  P+ ++   G +   V+L  L S++F SG P E+AQ  S F+ + I  S  +   DL I DG  AW L  DI+CL +DGN+ DA+  A + AL  +QLP    I++E  ++E       PL++R+ PV  +  +FD  ++I DP+  EE+L T  VT V+  EGK+C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:   36 VEGKRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITT--ADGSALVKLGNTTVICGVKAELAAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLIIRKHPVATSFAIFDDTLLIVDPTAEEEDLATGTVTVVTDEEGKLCSVHKPGGSPLTGAKLQDCITRAITRHKEVKKLIDKVIK 305          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A8C4XQU8_FALTI (Ribosomal RNA-processing protein 43 n=2 Tax=Falco TaxID=8952 RepID=A0A8C4XQU8_FALTI)

HSP 1 Score: 182 bits (461), Expect = 1.020e-52
Identity = 102/271 (37.64%), Postives = 160/271 (59.04%), Query Frame = 0
Query:    5 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 271
            AF+ ++P  +YRRF+K   RPDGREL   R  +V++G ++      SALV LG+T V+ G+  ++  P+ ++   G +   V+L  L S+KF SG P E+AQ  S F+ + I  S  +   DL I +G  AW L  DI+CL +DGN+ DA+  A + AL  +QLP    I++E  ++E       PLV+R+ PV  +  +FD  ++I DP+  EE+L +  VT V+  EG++C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 AFKMVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITT--ADGSALVKLGNTTVVCGVKAELAAPAVDSANKGYIVPNVELPSLCSTKFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIANGKLAWVLYCDIICLDYDGNILDASAFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLVIRKHPVATSFAIFDDTLLIVDPTAEEEDLASGTVTVVTDEEGRLCSVHKPGGSPLTGDKLQDCITRAITRHKEVKKLIDKVIK 271          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A7L0ZDC2_9PASS (Ribosomal RNA-processing protein 43 (Fragment) n=9 Tax=Neognathae TaxID=8825 RepID=A0A7L0ZDC2_9PASS)

HSP 1 Score: 182 bits (461), Expect = 1.120e-52
Identity = 104/272 (38.24%), Postives = 158/272 (58.09%), Query Frame = 0
Query:    5 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVL-SEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 271
             F+ ++P  +YRRF+K   RPDGREL   R  +V++G   S      SALV LG+T V+ G+  ++  P+ ++   G +   V+L  L S +F SG P E+AQ  S F+ + I  S  +V  DL I +G  AW L  DI+CL +DGNL DA++ A + AL  +QLP    I +E  ++E      TPL +R+ PV  +  +FD  ++I DP+  EE+L T  VT V+  EG++C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 CFRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGNTGSITTADGSALVKLGNTTVICGVKAELAAPAADSSNKGYIVPNVELPSLCSERFRSGPPGEEAQAASQFIADVIENSQMIVKEDLCIANGKLAWVLYCDIICLDYDGNLLDASVFALLAALKNVQLPSVI-ISEETGLSEVNLKQKTPLTIRKHPVATSLAIFDDTLLIVDPTAEEEDLATGTVTIVTDEEGRLCSVHKPGGSPLTGAKLQDCINRAITRHKEVKKLIDKVIK 274          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A7K4YTZ7_BUCAB (Ribosomal RNA-processing protein 43 (Fragment) n=53 Tax=Neognathae TaxID=8825 RepID=A0A7K4YTZ7_BUCAB)

HSP 1 Score: 181 bits (460), Expect = 1.530e-52
Identity = 101/271 (37.27%), Postives = 157/271 (57.93%), Query Frame = 0
Query:    5 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 271
             F+ ++P  +YRRF+K   RPDGREL   R  +V++G  S      SALV LG+T V+ G+  ++  P+ ++   G +   V+L  L S++F SG P E+AQ  S F+ + I  S  +   DL I +G  AW L  DI+CL +DGN+ DA+  A + AL  +QLP    I++E  ++E       PL +R+ PV  +  +FD  ++I DP+  EE+L T  VT V+  EG++C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 CFRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGKCSITTADGSALVKLGNTTVICGVKAELAAPAVDSADKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIANGKLAWVLYCDIICLDYDGNILDASAFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLTIRKHPVATSFAIFDDTLLIVDPTAEEEDLATGTVTIVTDDEGRLCSVHKPGGSPLTGAKLQDCITRAITRHKEVKKLIDKVIK 273          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJJ9_ECTSI2.930e-18596.72Ribosomal RNA-processing protein 43 n=2 Tax=Ectoca... [more]
A0A836C8N5_9STRA7.700e-8250.89Ribosomal RNA-processing protein 43 n=1 Tax=Tribon... [more]
UPI00074FE3AF1.620e-5439.78exosome complex component RRP43 n=1 Tax=Gekko japo... [more]
A0A803TXF1_ANOCA1.330e-5338.15Ribosomal RNA-processing protein 43 n=2 Tax=Iguani... [more]
UPI00115C75041.820e-5338.01LOW QUALITY PROTEIN: exosome complex component RRP... [more]
UPI0009E329174.990e-5342.15exosome complex component RRP43-like n=1 Tax=Orbic... [more]
UPI000522B7039.430e-5337.73exosome complex component RRP43 n=1 Tax=Opisthocom... [more]
A0A8C4XQU8_FALTI1.020e-5237.64Ribosomal RNA-processing protein 43 n=2 Tax=Falco ... [more]
A0A7L0ZDC2_9PASS1.120e-5238.24Ribosomal RNA-processing protein 43 (Fragment) n=9... [more]
A0A7K4YTZ7_BUCAB1.530e-5237.27Ribosomal RNA-processing protein 43 (Fragment) n=5... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 33..169
e-value: 6.9E-20
score: 71.9
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 194..254
e-value: 5.0E-7
score: 29.7
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 2..272
e-value: 1.5E-75
score: 256.2
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 1..269
IPR033196Exosome complex component Rrp43PANTHERPTHR11097:SF9EXOSOME COMPLEX COMPONENT RRP43coord: 1..269
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 4..216
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 190..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6609contigEcto-sp13_S_contig6609:4..1617 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6609.17456.1mRNA_Ecto-sp13_S_contig6609.17456.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6609 1..2186 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6609.17456.1 ID=prot_Ecto-sp13_S_contig6609.17456.1|Name=mRNA_Ecto-sp13_S_contig6609.17456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQA
SALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGR
PSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGN
LADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTPLVVREVPVPLTCG
VFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNE
CLQLCQQHAKQVTQTLEAAVRIQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR015847ExoRNase_PH_dom2
IPR027408PNPase/RNase_PH_dom_sf
IPR033196Rrp43
IPR020568Ribosomal_S5_D2-typ_fold
IPR036345ExoRNase_PH_dom2_sf