mRNA_Ecto-sp13_S_contig6604.17449.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6604.17449.1
Unique NamemRNA_Ecto-sp13_S_contig6604.17449.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: A0A6H5L8J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8J4_9PHAE)

HSP 1 Score: 929 bits (2402), Expect = 0.000e+0
Identity = 554/721 (76.84%), Postives = 578/721 (80.17%), Query Frame = 3 
Query:  681 MGRDGGRRXXXXXXXXXXXXXXXXXXTATRPVSFNSRRQHQDPPQSHNTTANPSNPGTASHAKPSHVRGRGDHNSGXXXXXXXXXILSRLGSPPRSPRIGNQDRAHDNTNPNVHRRPGSPPPSPRNALSRTDDNTNRKHDRRGAHRSSSATLSRASDAAKGEARLGSNDARQPLPRPPAAATATTAKQGRKEH--EKQCGRAASXXXXXXXXXXXXXXXXXXSRVRGVVNNAVINAAKSRSGRQRDDGGRGDNNPVASRRGENGGSRVXXXXXXSGATAVPAHRTGEKSSGSGREGCRIDREGAQHS-MLQKQRQQKQDKYARGTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQRVADPKKAVKKYRRSAAGRDMHSPELL-RPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDEARINVFDRHLHTREMQGVFSSLAELFFQGARVELPSQILNHHQHHHLGVDEYLCLQAVHALATAISNGNSSSGGDTQLGDAAGEQGVGRLFTTTVSKLCGGSSFSLPRPTHHSDGDGGDAGIASVAVTDPVEGRIQPPPVSFRTAFPKMATAVRILAVVRDGNWSEFFRLLGNFTPKPNGDAIREGKTLLVGGENASSPFAVRLRCVCHGMLLPLRAHALRAMNKAYGKSEKVPL 2831
            M RDGGR XXXXXXXXXXXXXXXXXXTATRPVSFNSRRQHQDPPQS NT A+PS PGTASHAKPSHVRGRGD NSG         ILSRLGSPPRSPR+GNQDRA DNTNPNVH RPG PPPSPRNALSR DDNTNRKHDRRGAHRSS+ATLSR S+AAKGEARLGSNDA QPLP P AAA ATTAKQGR EH  +KQ G AAS                  SR  GVVNNAV NAAKSRSGRQRD+GGRGD+NPV SR+G    SRV      +GATAVP HRTGEKSSGSGREG RIDR  A+HS MLQKQ+QQ+QDKYARGTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQR+ADPKKAVKKYRRSAAGRDMH  +L  RP            QD F +  S                   L  +AYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVL+TTANFYILAG                      GVFSSLAELFFQGAR ELPSQILNHHQHHHLGVDEYLCLQAVHALATAISN NSSSGG TQLGDAAGEQGVGRLFTTTVSKL  GSSFSL  PT+  DG+G DAGI+S AVT+PVEGRI P PVSFRTAFPKMATAVRILAVVRDGNWSEFFRLLG+FTPKPN DAIREGKTLLVGGE+ASSPFAVRLRCVCHGMLLP+RAHALRAMNKAYGKSEKVPL
Sbjct:    1 MRRDGGRXXXXXXXXXXXXXXXXXXXTATRPVSFNSRRQHQDPPQSDNTRAHPSKPGTASHAKPSHVRGRGDCNSGSGGGKGGGGILSRLGSPPRSPRVGNQDRADDNTNPNVHGRPGCPPPSPRNALSRKDDNTNRKHDRRGAHRSSAATLSRTSEAAKGEARLGSNDAGQPLPHPLAAAKATTAKQGRTEHHRQKQPGNAASGANSRNGSGGSNPAFSPSSRSGGVVNNAVNNAAKSRSGRQRDEGGRGDSNPVGSRKGXXXXSRVSGGRPDAGATAVPVHRTGEKSSGSGREGFRIDRYCAEHSSMLQKQQQQQQDKYARGTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQRIADPKKAVKKYRRSAAGRDMHRSQLRSRPK-----------QDEFPLRGSECRVEL-------------LALEAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLQTTANFYILAGL---------------------GVFSSLAELFFQGARAELPSQILNHHQHHHLGVDEYLCLQAVHALATAISNRNSSSGGGTQLGDAAGEQGVGRLFTTTVSKLSSGSSFSLLSPTNPCDGEGEDAGISSTAVTNPVEGRILPAPVSFRTAFPKMATAVRILAVVRDGNWSEFFRLLGDFTPKPNDDAIREGKTLLVGGEHASSPFAVRLRCVCHGMLLPVRAHALRAMNKAYGKSEKVPL 676
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BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: D7FRI1_ECTSI (SAC3_GANP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI1_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 5.710e-114
Identity = 186/207 (89.86%), Postives = 191/207 (92.27%), Query Frame = 3 
Query: 2211 GARVELPSQILNHHQHHHLGVDEYLCLQAVHALATAISNGNSSSGGDTQLGDAAGEQGVGRLFTTTVSKLCGGSSFSLPRPTHHSDGDGGDAGIASVAVTDPVEGRIQPPPVSFRTAFPKMATAVRILAVVRDGNWSEFFRLLGNFTPKPNGDAIREGKTLLVGGENASSPFAVRLRCVCHGMLLPLRAHALRAMNKAYGKSEKVPL 2831
            GAR ELPSQILNHHQHHHLG DEYLCLQAVHALATAISNGN SSGGD QLGDAAGEQGVGRLFTTTVSKLCGGSSF LP P++ SDG+G DAGIAS AVT PVEGRI P P+SFRTAFPKMATAVRILAVVRDGNWSEFFRLLGNFTPKPN DAIREG  LLVGGENASSPFAVRLRCVCH MLLP+RAHALRAMNKAYGKSEKVPL
Sbjct:   19 GARAELPSQILNHHQHHHLGGDEYLCLQAVHALATAISNGNGSSGGDPQLGDAAGEQGVGRLFTTTVSKLCGGSSFYLPPPSNQSDGEGRDAGIASTAVTYPVEGRILPAPMSFRTAFPKMATAVRILAVVRDGNWSEFFRLLGNFTPKPN-DAIREGTKLLVGGENASSPFAVRLRCVCHVMLLPVRAHALRAMNKAYGKSEKVPL 224
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BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: A0A6P7ZGJ5_9AMPH (SAC3 domain-containing protein 1 n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7ZGJ5_9AMPH)

HSP 1 Score: 100 bits (250), Expect = 3.670e-19
Identity = 75/193 (38.86%), Postives = 102/193 (52.85%), Query Frame = 3 
Query: 1641 GTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQRVADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDE-ARINVFDRHLHTREMQGVFSSLAELFFQGA 2216
            GTC+SMCPE ER+ERE +  L  FE    T G+ +      ADP+K VK+Y R AAG++   P  LRP +VL  T QYLV++V     +S                     + Y FV DRLRAVRQD+ VQ   ++G T  A +L     F + A Y MS E ++   FD  LH+R ++  FS L + +  G+
Sbjct:   16 GTCLSMCPEQERKERELQHRLHRFEVLAGTEGSHLPQ----ADPRKTVKEYSRPAAGKNAPRPSDLRPPAVLLKTVQYLVEEVVPRTDASW-------------------GEIYTFVSDRLRAVRQDMIVQ--RVQGKTCTA-LLEPILAFLLCASYFMSHEDSKPYQFDSALHSRHVRECFSWLLQCYKDGS 182
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BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: UPI0011298129 (SAC3 domain-containing protein 1 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI0011298129)

HSP 1 Score: 99.0 bits (245), Expect = 1.620e-18
Identity = 73/192 (38.02%), Postives = 99/192 (51.56%), Query Frame = 3 
Query: 1641 GTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQRVADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDEA-RINVFDRHLHTREMQGVFSSLAELFFQG 2213
            GTC++MCPE ER ERE +  L  FE    T G     RQ  ADP K VK+Y R AAG+++  P  LRP +VL  T +YL+++V     +S                     + Y FV DRLR+VRQD+ VQ +  E       +L  T  F + AGY +S EA +++ FD  LH   M+  FS L + +  G
Sbjct:   16 GTCLTMCPEQERMERELQHRLHRFEMLAGTEG----HRQPQADPHKTVKEYSRPAAGKNVPQPTDLRPPAVLLKTVRYLMEEVVPRTDASWR-------------------ELYTFVSDRLRSVRQDMIVQRVHGED---CVTLLEPTLAFLLCAGYCVSQEASKLHHFDSTLHAGHMRECFSWLLQCYKAG 181
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BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: K7GAX4_PELSI (SAC3_GANP domain-containing protein n=2 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7GAX4_PELSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.240e-16
Identity = 70/193 (36.27%), Postives = 97/193 (50.26%), Query Frame = 3 
Query: 1626 DKYARGTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQRVADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDEARINVFDRHLHTREMQGVFSSLAELF 2204
            D++  GTC  MCP+SE  +RE +G L   E  E T         R  DP + VK+Y R AAG+++  P+ LRP  VL TT +YL+  V + A                       A+ Y FV DRLRAVRQD T+Q   L+G    A +L  +  + + AGY +  E   + FD HLH+ ++Q  FS L   +
Sbjct:   66 DEFLVGTCPRMCPQSELTQRERQGRLHRLELQEGT---------RQGDPDRVVKEYSRPAAGKELPRPQELRPAPVLLTTVRYLLGQVTSRADLPP-------------------AEVYAFVSDRLRAVRQDATLQ--RLQGAPCVA-LLERSLGYLLHAGYRLCQEPPAH-FDPHLHSTQLQECFSWLRRCY 226
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BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: A0A8C5Q3Z2_9ANUR (SAC3 domain containing 1 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5Q3Z2_9ANUR)

HSP 1 Score: 91.3 bits (225), Expect = 7.120e-16
Identity = 73/193 (37.82%), Postives = 103/193 (53.37%), Query Frame = 3 
Query: 1641 GTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQRV-----ADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDEARINVFDRHLHTREMQGVFSSLAELF 2204
            G C+ MCP  ER++R+  G L  FE     AG SVS   RV     ADP K VK+Y R AAG+++  P  LRP  VL  T +YL+ +V+  A  +                A  +A+AY FV DR+RAVRQDLTVQ   + G +GA  VL  +  F + + YL+ D   +  ++  LH  +++  F+ L E +
Sbjct:   10 GQCLDMCPAKERKQRQQLGRLHRFEMQ---AGCSVSKGCRVKSLPLADPAKTVKEYSRPAAGKELSLPCDLRPPPVLLKTVRYLLMEVWDRAIDTG---------------AGSLAEAYSFVFDRVRAVRQDLTVQ--RIRGRSGAL-VLEGSLGFLLCSPYLVRD-LPLETYNVVLHGNQVRESFAELMECY 180
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BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: UPI000854E9B1 (SAC3 domain-containing protein 1 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854E9B1)

HSP 1 Score: 90.1 bits (222), Expect = 1.580e-15
Identity = 75/198 (37.88%), Postives = 103/198 (52.02%), Query Frame = 3 
Query: 1641 GTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQR---VADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDEARINVFDRHLHTREMQGVFSSLAELFFQGARVE 2225
            G C+ MC E ERRERE    L   E          +FRQ     ADP + VK+Y R AAGR++ SP  LRP + L  T +YL+ +V+                     P SL + AY FV DRLRAVRQDLTVQ ++  GT GA+ VL  +  F + A YL+ D   +  +   LH+ +++  F+ L E + +G R +
Sbjct:    8 GLCLDMCSEQERRERERHRRLHPLEIQNGQFERR-NFRQGSHPFADPGRTVKEYSRPAAGRELSSPRDLRPPATLLRTVEYLLMEVWEQVNEQ--------------DPKSL-SLAYPFVFDRLRAVRQDLTVQRIS--GTEGAS-VLEGSLGFLLCAPYLVRD-LPLEDYCETLHSTQVRESFAELMECYSRGGRFQ 185
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BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: A0A2G9RT46_LITCT (SAC3_GANP domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RT46_LITCT)

HSP 1 Score: 90.1 bits (222), Expect = 2.560e-15
Identity = 70/196 (35.71%), Postives = 101/196 (51.53%), Query Frame = 3 
Query: 1641 GTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQR---VADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDEARINVFDRHLHTREMQGVFSSLAELFFQGAR 2219
            G C+ MC E ERRERE  G L   E           FR     +ADP + VK+Y R AAG+++ SP  LRP + L  T QYL+ +++                      ++ +A AY FV DRLRAVRQDLTVQ ++  GT GA  VL  +  F + A YL+ D   +  +   LH+ +++  F+ L + + +G +
Sbjct:   52 GLCLDMCSERERREREQHGLLHPLEMQNRHLQ-KRGFRHGGHPIADPGRTVKEYSRPAAGKELSSPRNLRPPATLLKTVQYLIMEIWEEV---------------NEQDSTSLALAYPFVFDRLRAVRQDLTVQRIS--GTEGAP-VLEGSLGFLLCAPYLVRD-LPLEDYSETLHSTQVRESFAELMQCYNRGGK 227
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: UPI001C91606B (SAC3 domain-containing protein 1-like isoform X1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C91606B)

HSP 1 Score: 88.6 bits (218), Expect = 4.410e-15
Identity = 78/209 (37.32%), Postives = 104/209 (49.76%), Query Frame = 3 
Query: 1641 GTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQRVADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDEARINVFDRHLHTREMQGVFSSLAELFFQGARVELPSQILNHHQHHHL 2267
            GTC+  CPESE + R+ E  +   EA EAT       R+  AD  + +K + RSAAGR +     LRP +VL  T  Y+   V   A S              G PA      Y F  DRLRAVRQDLTVQ  A      A  VLR  A F++ A Y  S +  ++VFDRH++TR++Q     L  L  Q A+ + P+++    +  HL
Sbjct:    8 GTCLMKCPESEVKWRQRERLIHLLEADEATVSGPAGRRR--ADRDRMIKSFERSAAGRPVSERRCLRPPAVLLETVGYVFHSVLPRAESV-------------GWPA-----VYAFCVDRLRAVRQDLTVQQAA---GPQALAVLRRCALFHLYADY-RSRDCPLDVFDRHINTRQLQECL--LGVLRLQQAQPDGPTELCERFEAVHL 190
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Match: A0A6I8PU88_XENTR (SAC3 domain containing 1 n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8PU88_XENTR)

HSP 1 Score: 88.2 bits (217), Expect = 8.140e-15
Identity = 70/198 (35.35%), Postives = 99/198 (50.00%), Query Frame = 3 
Query: 1641 GTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQR-----VADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQDVFAIACSSXXXXXXXXXXXQGGSPASLIAQAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLRTTANFYILAGYLMSDEARINVFDRHLHTREMQGVFSSLAELFFQGAR 2219
            G C  MCP  ER+ERE +G L  FE T+   G      +R      ADP K VK+Y R AAG+++ SP  +RP +VL  T +YL+  V+                         +++AY FV DRLRAVRQD+TVQ   + G  GA  VL  +  F + A YL+     +  +D  LH  +++  F+ L E + +  R
Sbjct:   10 GLCPDMCPRKERQERERQGLLHHFETTD---GQRARRGRRGKASMCADPAKTVKEYSRPAAGKELSSPYDIRPPAVLLKTVRYLLMKVWDSVNEMDSVN---------------LSEAYCFVFDRLRAVRQDMTVQ--RVRGQLGAV-VLEESLGFLLCAPYLVR-HLPVESYDEVLHATQVRESFAELMECYKEDVR 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6604.17449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8J4_9PHAE0.000e+076.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRI1_ECTSI5.710e-11489.86SAC3_GANP domain-containing protein n=1 Tax=Ectoca... [more]
A0A6P7ZGJ5_9AMPH3.670e-1938.86SAC3 domain-containing protein 1 n=1 Tax=Microcaec... [more]
UPI00112981291.620e-1838.02SAC3 domain-containing protein 1 n=1 Tax=Rhinatrem... [more]
K7GAX4_PELSI3.240e-1636.27SAC3_GANP domain-containing protein n=2 Tax=Pelodi... [more]
A0A8C5Q3Z2_9ANUR7.120e-1637.82SAC3 domain containing 1 n=1 Tax=Leptobrachium lei... [more]
UPI000854E9B11.580e-1537.88SAC3 domain-containing protein 1 n=1 Tax=Nanorana ... [more]
A0A2G9RT46_LITCT2.560e-1535.71SAC3_GANP domain-containing protein n=1 Tax=Lithob... [more]
UPI001C91606B4.410e-1537.32SAC3 domain-containing protein 1-like isoform X1 n... [more]
A0A6I8PU88_XENTR8.140e-1535.35SAC3 domain containing 1 n=1 Tax=Xenopus tropicali... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6604contigEcto-sp13_S_contig6604:3142..8106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start1
Seed ortholog score94.7
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog13735.ENSPSIP00000017435
Preferred nameSAC3D1
Model size2832
KEGG koko:K16734
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0002682,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007098,GO:0008150,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0022402,GO:0022607,GO:0023051,GO:0023057,GO:0031023,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0046425,GO:0046426,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050776,GO:0050789,GO:0050794,GO:0051225,GO:0051298,GO:0065007,GO:0070925,GO:0071840,GO:1902531,GO:1902532,GO:1904892,GO:1904893
Exons6
EggNOG free text desc.SAC3 domain-containing protein 1
EggNOG OGs39W3F@33154,3BMVB@33208,3D0HZ@33213,48BCW@7711,495YA@7742,4CBCW@8459,COG5079@1,KOG1860@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_000040.1
Cds size2595
COG Functional cat.DU
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6604.17449.1prot_Ecto-sp13_S_contig6604.17449.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6604 3378..8106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463909.855662-UTR-Ecto-sp13_S_contig6604:3141..33771681463909.855662-UTR-Ecto-sp13_S_contig6604:3141..3377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6604 3142..3377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463909.874049-CDS-Ecto-sp13_S_contig6604:3377..49661681463909.874049-CDS-Ecto-sp13_S_contig6604:3377..4966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6604 3378..4966 +
1681463909.887671-CDS-Ecto-sp13_S_contig6604:5537..58481681463909.887671-CDS-Ecto-sp13_S_contig6604:5537..5848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6604 5538..5848 +
1681463909.9078486-CDS-Ecto-sp13_S_contig6604:6322..63961681463909.9078486-CDS-Ecto-sp13_S_contig6604:6322..6396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6604 6323..6396 +
1681463909.919486-CDS-Ecto-sp13_S_contig6604:6671..68431681463909.919486-CDS-Ecto-sp13_S_contig6604:6671..6843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6604 6672..6843 +
1681463909.9301841-CDS-Ecto-sp13_S_contig6604:7288..74761681463909.9301841-CDS-Ecto-sp13_S_contig6604:7288..7476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6604 7289..7476 +
1681463909.9430168-CDS-Ecto-sp13_S_contig6604:7845..81061681463909.9430168-CDS-Ecto-sp13_S_contig6604:7845..8106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6604 7846..8106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6604.17449.1

>prot_Ecto-sp13_S_contig6604.17449.1 ID=prot_Ecto-sp13_S_contig6604.17449.1|Name=mRNA_Ecto-sp13_S_contig6604.17449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=865bp
MGDKGDTTAGPVTPAVPARRGYTISRVEAAPSAASKQPLNVAAANGGYDK
ASTDKKKAPHREGGAGRTGRGGDGGSKDGERGKKKRAGKGGNAVSLFAGR
GDTRVNNEPNGGFDRSKAIAPKGSAHQQQVRRGKDSGFAGVRSAITSTMG
RDGGRRQYHHEHDDRAEAPPAAAATATRPVSFNSRRQHQDPPQSHNTTAN
PSNPGTASHAKPSHVRGRGDHNSGGGGGQGGGGILSRLGSPPRSPRIGNQ
DRAHDNTNPNVHRRPGSPPPSPRNALSRTDDNTNRKHDRRGAHRSSSATL
SRASDAAKGEARLGSNDARQPLPRPPAAATATTAKQGRKEHEKQCGRAAS
GANSRNGSGGSNSSFSPFSRVRGVVNNAVINAAKSRSGRQRDDGGRGDNN
PVASRRGENGGSRVSGGRPDSGATAVPAHRTGEKSSGSGREGCRIDREGA
QHSMLQKQRQQKQDKYARGTCMSMCPESERREREAEGGLSSFEATEATAG
ASVSFRQRVADPKKAVKKYRRSAAGRDMHSPELLRPLSVLQTTTQYLVQD
VFAIACSSSSSVSSQRRREQGGSPASLIAQAYMFVEDRLRAVRQDLTVQG
LALEGTTGAAEVLRTTANFYILAGYLMSDEARINVFDRHLHTREMQGVFS
SLAELFFQGARVELPSQILNHHQHHHLGVDEYLCLQAVHALATAISNGNS
SSGGDTQLGDAAGEQGVGRLFTTTVSKLCGGSSFSLPRPTHHSDGDGGDA
GIASVAVTDPVEGRIQPPPVSFRTAFPKMATAVRILAVVRDGNWSEFFRL
LGNFTPKPNGDAIREGKTLLVGGENASSPFAVRLRCVCHGMLLPLRAHAL
RAMNKAYGKSEKVPL
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mRNA from alignment at Ecto-sp13_S_contig6604:3142..8106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6604.17449.1 ID=mRNA_Ecto-sp13_S_contig6604.17449.1|Name=mRNA_Ecto-sp13_S_contig6604.17449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6604:3142..8106+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCGACAAGGCTCCGCCAGCAGCACAGCAGTGTGTGAACGTGCGACTC
AGCAAAGTAATCTTGCGATTGGTTTGCACCGTCATCCAACCTGCAGCGCT
GCGATACTGCTTCCGCGGCGAATTTTGAAAGAAAGGGCTGTGTATCATCG
CACCTGCTCTGCGGCCGTGGCCTCTTTTCCCGCGACAAGCTGCGCGTGTG
ATCCAGACGGCAACAGGTGTGAACAACAACAACAACATGGGCGATAAAGG
GGATACCACGGCAGGACCGGTAACTCCTGCTGTTCCAGCCCGCCGTGGAT
ACACGATATCAAGAGTAGAAGCAGCCCCGAGTGCTGCGAGTAAGCAACCG
CTGAACGTCGCAGCTGCCAACGGCGGATACGACAAGGCTTCTACTGACAA
GAAGAAGGCCCCGCACCGCGAGGGTGGAGCAGGACGGACAGGGCGAGGTG
GTGACGGCGGTAGTAAAGATGGGGAGCGAGGGAAGAAGAAACGAGCGGGA
AAAGGTGGGAATGCTGTTTCCTTATTTGCTGGTCGGGGCGACACGCGAGT
GAACAACGAACCGAACGGTGGCTTTGATCGCAGCAAAGCAATCGCGCCCA
AAGGGTCCGCACACCAACAGCAAGTCCGCAGAGGGAAAGACAGCGGATTT
GCGGGGGTGCGTAGCGCCATCACATCAACGATGGGGAGGGATGGAGGTCG
TCGCCAGTACCACCACGAACACGATGATAGGGCAGAGGCGCCTCCTGCAG
CAGCAGCAACAGCCACAAGACCCGTCTCTTTCAACTCTCGACGCCAGCAT
CAAGATCCCCCTCAGTCCCACAACACCACAGCAAACCCATCGAATCCAGG
GACTGCCTCTCACGCCAAGCCCTCTCATGTCCGAGGGCGCGGGGACCACA
ACAGCGGTGGCGGCGGAGGCCAAGGCGGAGGGGGCATCTTGAGCAGGCTT
GGCTCCCCCCCACGCTCTCCTCGGATCGGCAACCAAGACCGCGCCCATGA
CAACACCAACCCCAATGTCCATCGAAGGCCCGGCTCTCCTCCACCGTCTC
CACGCAACGCCCTGTCGAGGACAGATGACAACACCAACCGGAAGCATGAC
CGACGGGGCGCTCACCGATCGAGTTCAGCCACTCTCTCGAGGGCTTCAGA
CGCAGCGAAAGGAGAAGCGCGGCTCGGGTCCAATGATGCTCGGCAACCAT
TGCCGCGCCCACCTGCTGCAGCTACCGCCACCACCGCCAAGCAGGGGCGG
AAAGAGCACGAAAAGCAGTGCGGCAGGGCGGCATCGGGTGCCAACTCGAG
AAACGGGAGCGGCGGGTCCAATTCCTCCTTCTCCCCTTTCTCTCGGGTTC
GCGGTGTTGTAAACAACGCCGTAATCAACGCCGCGAAATCGAGATCCGGT
CGCCAGCGAGACGATGGAGGTCGTGGCGACAACAACCCCGTCGCCTCGCG
GAGGGGAGAGAACGGGGGGTCAAGGGTGTCTGGAGGGCGGCCTGATAGTG
GTGCTACTGCTGTTCCCGCACATCGTACCGGAGAAAAGAGCAGCGGAAGT
GGCAGGGAGGGTTGCCGCATCGACCGTGAAGGTGCACAGCACAGTATGCT
GCAGAAGCAGCGCCAGCAGAAGCAGGATAAATACGCCCGAGGGACGTGCA
TGTCCATGTGTCCGGAGTCGGAGAGGAGGGAGAGGGAGGCGGAGGGGGGG
CTAAGCTCCTTCGAGGCCACGGAGGCCACTGCAGGAGCGTCTGTGTCCTT
TCGACAAAGGGTCGCGGACCCCAAGAAAGCGGTCAAGAAGTACCGTCGCT
CGGCCGCGGGGAGGGACATGCACAGGTGCCTTTTTAGCATTTCGTTGATG
TTGGATCAGCTTCGCTTTCCTTTTTTTCCGTCTACGCTAAGTTTGCGTCG
CTCCCAAGGTCGACCCACTTGCCGTTGGTCGCAACTCCGATCTCCTCCCA
AGCAAGACGAATTTCCTCTCCGAGGCTCCGAGTTTCGTGTCGAGTTGCTT
GCCTTGGGGGTATGACGCGTTTTTGGTCGAATCAAGCACAACGATGCCAA
TATCCTCTGCTGATAAAAAAAATGCATTAACATTCTAACTGGAGACTGCT
TGCCTTAATTGTTTGAGGGTTGGCGGACAGCGACGGGAACCACGAAGGAG
TGTACCCCCCTGTTGCCCCGCCAAACTTTACGTAGTCTCCCGCTTCGTGG
CGTTTTCCCTTTCCTCGCCCGAACGGCGGCGTAGGCAGGAGGCGTCATGC
TAGGCTTATGATATCCCTCAGAGCACAATAAGGTAACAGCCAACATCTGA
TAACGAAGATTTTTGTTTTATGCGTTGTTTTTACTCCGCTTGGTAAGCGT
TGTTGCTAACTCACTTGGCGCTCGCCCCCGCTCCCAACGTCGTCAGCCCC
GAGCTACTCCGGCCTCTCTCGGTCTTGCAGACCACGACGCAATACCTGGT
TCAAGATGTCTTCGCCATAGCCTGCAGCAGCAGTAGCAGCGTCAGCAGCC
AGCGGCGACGAGAGCAAGGAGGGAGTCCTGCGTCTCTCATCGCGCAGGCG
TACATGTTCGTGGAGGATAGGCTTCGAGCGGTGCGGCAGGACTTGACGGT
GCAAGGGCTGGCGTTGGAAGGGACAACAGGGGCGGCCGAAGTCCTCCGAA
CCACGGCTAACTTCTACATCTTGGCGGGGTACCTCATGTCTGACGAGGCA
AGGATAAGTTTTGCGCAAGACGTTTTGTGGGTGCGCTCGTAAGACATGGC
GGGGCTCAGTGTTTTATATCTGGGATCCTTTTGCTCCTGTGGGTCGTGAA
CGTAACACGCGCCAGGTTGGTAAATAGCTCACGACGAGCCATGTGGATGG
CCCCTCTGGATAGAGGAAAAATTGTGTGGCATTTAGCCAGCGGGAGGTTG
AACGCCAACTATAAAATCATATTCATAATTGTCCACCCCGTGCTCTTTTG
GAACGTGGCACGGACGTAGTGCTGGAGAGCGCTTTCTTTGAATTGCTGGG
AAAGTGCAACATCAACACACGAGAACAAATTGCAATACACGTGCTGCCGC
AACCAGTTCATTGTTCGCTGCAAGGGTGGGGTGTCTGTTTTTGGTGGGTT
TGTTGGTGCTGTCGCCGATGATGACATGCCATATGCCGTATGCCGTGTCG
TCTCTGTTCCGTTCGCTTTACCAGGCGACAGATGTCTTCGACCGACATCT
ACACACGCGAGAGATGCAGGGAGTCTTCTCTTCGTTGGCGGAGCTTTTCT
TCCAGGTGCGGGGGGGTTGTCATTGTGGTCGTAGGTCGTTGCTGGGGTCG
GCAGGGGGCACGGAGCCTTTTGGGGGATGACAAACGTCCTCGCAGCATTG
AGCTTACCCTACCCGGCCCGCGGTCGTCACGAGCGTGAACGTTGAAATGA
TTGAATCTAGTTCTACATTCTTCATCTCGCGGGTGGCGGATGGAGTGCCG
TTGTTGCTGGTTTAGCCGGTAGACGCGCGGAATCGCTTATCCCCCTTCCC
TCTCCCCATTGGCCTGCTTGCGGCATGCAGGGGGCGAGGGTGGAACTCCC
TTCTCAAATCTTGAATCACCACCAACATCACCACCTTGGGGTGGACGAGT
ACCTTTGCCTGCAAGCGGTGCACGCCTTGGCGACAGCCATCTCAAACGGG
AACAGCTCTAGCGGGGGAGACACACAGCTTGGGGACGCGGCCGGCGAGCA
AGGTGTGTGGAATTAATCACCTTCGCCAAGGAATGCCCAGTCGGAAGGCT
CGATTGTTTTTTTCTTGCATGTTTTCCCTACTCTTGGTGTGTTAAATGAA
GCTTTCAGTAGTACACAACCGTGTGTTTTTGTTCAGGGACATAGCCTCGT
ACACACGAAGAACATGATGCCATGACGTCCAAGGTGCCATCACATGAACC
CACGAGAATTCACGTTGGCCTTCAACGATGAGACTTGCAACAGCTTTGGG
TTGTTGCTGATAGCATGTTTCCTTCTGAGAACCCGGTCGCTTTTCCCACT
AGTTTCTCTCTTCTTAGGCCCTGTCCGCACCAGCACTACACGTACATATG
TATGGGGGACTCGTCGTGTTGGCGCCTCTTTGAGATGAACTGCCGGTAAA
CGTAACAGGCCCACTACGGAGCTTCCGTTGTGTACCAACCTACCCAGGTG
TCGGCAGGCTGTTCACCACCACGGTCTCAAAGCTGTGCGGCGGCTCGTCT
TTCTCCTTGCCGCGGCCAACCCACCATAGCGACGGAGACGGCGGAGATGC
GGGCATCGCTTCGGTTGCAGTGACAGACCCCGTCGAGGGTAGAATCCAAC
CACCCCCCGTGTCGTTCAGAACGGCCTTCCCGAAGGTGATGAAACTGTTT
CTTTCACCAGCCTGTGCCGAGCATGCCCACGTGTCCATCAGTTCCTCTCT
TACCTGAACCCCGAAGCGTACCTATGATTTCTTTTTCGCCTCTACTTCTC
CCGTGACCCCGATTGAGTAGTTCAAGAAGAACCGGCCGTTCGGCACACAT
TGGAATACCAACATACGGTTGTGCATCCCAAGAATGCCGTCGAAGTGTTT
TGGCGTTGCTCTTGTCGGATATCTGTTGGAACGGTTGTGACCCCGTCATG
GACCTCCCCGATGCTCTTGCAAAGCACACCTCCATCCCAATACCTATGGA
CTTCATTTCACCCCCGAACCTAACCCTACCCCCCTTTTTGCCTTGGTATG
ATAGATGGCGACGGCAGTTCGAATTCTGGCGGTGGTACGTGACGGGAATT
GGTCGGAATTCTTCCGGCTGCTCGGCAATTTCACGCCGAAACCTAACGGC
GACGCAATACGTGAGGGCAAGACGCTGCTGGTCGGGGGTGAGAACGCTTC
ATCCCCTTTTGCCGTTCGCCTTCGATGCGTATGTCACGGCATGCTTCTGC
CCCTGAGGGCCCACGCGCTGAGAGCTATGAACAAGGCGTACGGAAAGAGC
GAGAAGGTTCCGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6604:3142..8106+

>mRNA_Ecto-sp13_S_contig6604.17449.1 ID=mRNA_Ecto-sp13_S_contig6604.17449.1|Name=mRNA_Ecto-sp13_S_contig6604.17449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2595bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6604:3142..8106+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGATAAAGGGGATACCACGGCAGGACCGGTAACTCCTGCTGTTCC
AGCCCGCCGTGGATACACGATATCAAGAGTAGAAGCAGCCCCGAGTGCTG
CGAGTAAGCAACCGCTGAACGTCGCAGCTGCCAACGGCGGATACGACAAG
GCTTCTACTGACAAGAAGAAGGCCCCGCACCGCGAGGGTGGAGCAGGACG
GACAGGGCGAGGTGGTGACGGCGGTAGTAAAGATGGGGAGCGAGGGAAGA
AGAAACGAGCGGGAAAAGGTGGGAATGCTGTTTCCTTATTTGCTGGTCGG
GGCGACACGCGAGTGAACAACGAACCGAACGGTGGCTTTGATCGCAGCAA
AGCAATCGCGCCCAAAGGGTCCGCACACCAACAGCAAGTCCGCAGAGGGA
AAGACAGCGGATTTGCGGGGGTGCGTAGCGCCATCACATCAACGATGGGG
AGGGATGGAGGTCGTCGCCAGTACCACCACGAACACGATGATAGGGCAGA
GGCGCCTCCTGCAGCAGCAGCAACAGCCACAAGACCCGTCTCTTTCAACT
CTCGACGCCAGCATCAAGATCCCCCTCAGTCCCACAACACCACAGCAAAC
CCATCGAATCCAGGGACTGCCTCTCACGCCAAGCCCTCTCATGTCCGAGG
GCGCGGGGACCACAACAGCGGTGGCGGCGGAGGCCAAGGCGGAGGGGGCA
TCTTGAGCAGGCTTGGCTCCCCCCCACGCTCTCCTCGGATCGGCAACCAA
GACCGCGCCCATGACAACACCAACCCCAATGTCCATCGAAGGCCCGGCTC
TCCTCCACCGTCTCCACGCAACGCCCTGTCGAGGACAGATGACAACACCA
ACCGGAAGCATGACCGACGGGGCGCTCACCGATCGAGTTCAGCCACTCTC
TCGAGGGCTTCAGACGCAGCGAAAGGAGAAGCGCGGCTCGGGTCCAATGA
TGCTCGGCAACCATTGCCGCGCCCACCTGCTGCAGCTACCGCCACCACCG
CCAAGCAGGGGCGGAAAGAGCACGAAAAGCAGTGCGGCAGGGCGGCATCG
GGTGCCAACTCGAGAAACGGGAGCGGCGGGTCCAATTCCTCCTTCTCCCC
TTTCTCTCGGGTTCGCGGTGTTGTAAACAACGCCGTAATCAACGCCGCGA
AATCGAGATCCGGTCGCCAGCGAGACGATGGAGGTCGTGGCGACAACAAC
CCCGTCGCCTCGCGGAGGGGAGAGAACGGGGGGTCAAGGGTGTCTGGAGG
GCGGCCTGATAGTGGTGCTACTGCTGTTCCCGCACATCGTACCGGAGAAA
AGAGCAGCGGAAGTGGCAGGGAGGGTTGCCGCATCGACCGTGAAGGTGCA
CAGCACAGTATGCTGCAGAAGCAGCGCCAGCAGAAGCAGGATAAATACGC
CCGAGGGACGTGCATGTCCATGTGTCCGGAGTCGGAGAGGAGGGAGAGGG
AGGCGGAGGGGGGGCTAAGCTCCTTCGAGGCCACGGAGGCCACTGCAGGA
GCGTCTGTGTCCTTTCGACAAAGGGTCGCGGACCCCAAGAAAGCGGTCAA
GAAGTACCGTCGCTCGGCCGCGGGGAGGGACATGCACAGCCCCGAGCTAC
TCCGGCCTCTCTCGGTCTTGCAGACCACGACGCAATACCTGGTTCAAGAT
GTCTTCGCCATAGCCTGCAGCAGCAGTAGCAGCGTCAGCAGCCAGCGGCG
ACGAGAGCAAGGAGGGAGTCCTGCGTCTCTCATCGCGCAGGCGTACATGT
TCGTGGAGGATAGGCTTCGAGCGGTGCGGCAGGACTTGACGGTGCAAGGG
CTGGCGTTGGAAGGGACAACAGGGGCGGCCGAAGTCCTCCGAACCACGGC
TAACTTCTACATCTTGGCGGGGTACCTCATGTCTGACGAGGCAAGGATAA
ATGTCTTCGACCGACATCTACACACGCGAGAGATGCAGGGAGTCTTCTCT
TCGTTGGCGGAGCTTTTCTTCCAGGGGGCGAGGGTGGAACTCCCTTCTCA
AATCTTGAATCACCACCAACATCACCACCTTGGGGTGGACGAGTACCTTT
GCCTGCAAGCGGTGCACGCCTTGGCGACAGCCATCTCAAACGGGAACAGC
TCTAGCGGGGGAGACACACAGCTTGGGGACGCGGCCGGCGAGCAAGGTGT
CGGCAGGCTGTTCACCACCACGGTCTCAAAGCTGTGCGGCGGCTCGTCTT
TCTCCTTGCCGCGGCCAACCCACCATAGCGACGGAGACGGCGGAGATGCG
GGCATCGCTTCGGTTGCAGTGACAGACCCCGTCGAGGGTAGAATCCAACC
ACCCCCCGTGTCGTTCAGAACGGCCTTCCCGAAGATGGCGACGGCAGTTC
GAATTCTGGCGGTGGTACGTGACGGGAATTGGTCGGAATTCTTCCGGCTG
CTCGGCAATTTCACGCCGAAACCTAACGGCGACGCAATACGTGAGGGCAA
GACGCTGCTGGTCGGGGGTGAGAACGCTTCATCCCCTTTTGCCGTTCGCC
TTCGATGCGTATGTCACGGCATGCTTCTGCCCCTGAGGGCCCACGCGCTG
AGAGCTATGAACAAGGCGTACGGAAAGAGCGAGAAGGTTCCGTTG
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