mRNA_Ecto-sp13_S_contig65991.17443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65991.17443.1
Unique NamemRNA_Ecto-sp13_S_contig65991.17443.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: D7FSR0_ECTSI (DNL-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR0_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.650e-19
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   16 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG
Sbjct:   50 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 87
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: A0A6H5JD28_9PHAE (DNL-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD28_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.760e-18
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   16 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG
Sbjct:  215 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 252
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: A0A835YZV4_9STRA (DNL zinc finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZV4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-14
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   13 QVCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            +VCETR AK F+KL+YE+GVVL RCPGC+N+HL+ADRLG
Sbjct:   88 KVCETRAAKGFSKLAYEQGVVLVRCPGCNNLHLVADRLG 126
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: A0A2D4C279_PYTIN (DNL-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C279_PYTIN)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-13
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            VC TR+AKT +K +Y KGVVLARCPGC N+HLIADRLG
Sbjct:    7 VCNTRSAKTISKHAYYKGVVLARCPGCENLHLIADRLG 44
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: A0A7I8W5L9_9ANNE (DgyrCDS12153 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W5L9_9ANNE)

HSP 1 Score: 66.6 bits (161), Expect = 7.950e-13
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   13 QVCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            +VCE RT +TF+K+SYEKGVV+ +CPGC+N HLIAD LG
Sbjct:   63 KVCEQRTTRTFSKISYEKGVVIIKCPGCNNNHLIADNLG 101
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: A0A0P1A8C7_PLAHL (Zinc finger n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8C7_PLAHL)

HSP 1 Score: 67.4 bits (163), Expect = 8.070e-13
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            VCETR+AKT +K +Y KGVVL RCPGC N+HLIADRLG
Sbjct:   89 VCETRSAKTISKHAYYKGVVLVRCPGCENLHLIADRLG 126
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: A0A7S1X9S7_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X9S7_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 8.370e-13
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   16 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            VCETR AKT ++ SYEKGVVL RCPGC N+HLIADR G
Sbjct:  113 VCETRAAKTMSRQSYEKGVVLVRCPGCQNLHLIADRYG 150
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: H3GFR7_PHYRM (DNL-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFR7_PHYRM)

HSP 1 Score: 67.0 bits (162), Expect = 1.010e-12
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            VCETR+AKT +K +Y KGVVL RCPGC N+HL+ADRLG
Sbjct:   83 VCETRSAKTISKHAYYKGVVLVRCPGCENLHLVADRLG 120
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: A0A2P4Y2G7_9STRA (DNL-type domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2G7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-12
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 VCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            VCETR+AKT +K +Y KGVVL RCPGC N+HL+ADRLG
Sbjct:   86 VCETRSAKTISKHAYYKGVVLVRCPGCENLHLVADRLG 123
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BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Match: UPI00098E3171 (DNL-type zinc finger protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E3171)

HSP 1 Score: 67.0 bits (162), Expect = 1.250e-12
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   13 QVCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG 129
            +VCETR+ KT  + SYEKGVVLARC GC+N+HLIADRLG
Sbjct:   96 RVCETRSVKTVCRESYEKGVVLARCGGCNNVHLIADRLG 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65991.17443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSR0_ECTSI1.650e-19100.00DNL-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JD28_9PHAE2.760e-18100.00DNL-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YZV4_9STRA3.960e-1474.36DNL zinc finger-domain-containing protein n=1 Tax=... [more]
A0A2D4C279_PYTIN1.680e-1376.32DNL-type domain-containing protein n=1 Tax=Pythium... [more]
A0A7I8W5L9_9ANNE7.950e-1369.23DgyrCDS12153 n=1 Tax=Dimorphilus gyrociliatus TaxI... [more]
A0A0P1A8C7_PLAHL8.070e-1376.32Zinc finger n=1 Tax=Plasmopara halstedii TaxID=478... [more]
A0A7S1X9S7_9CHLO8.370e-1376.32Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
H3GFR7_PHYRM1.010e-1273.68DNL-type domain-containing protein n=1 Tax=Phytoph... [more]
A0A2P4Y2G7_9STRA1.070e-1273.68DNL-type domain-containing protein n=2 Tax=Phytoph... [more]
UPI00098E31711.250e-1274.36DNL-type zinc finger protein n=1 Tax=Asparagus off... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65991contigEcto-sp13_S_contig65991:65..196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score84.3
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D7FSR0
Preferred nameDNLZ
Model size132
KEGG koko:K02953,ko:K12794,ko:K17808
KEGG Pathwayko03010,ko04621,ko05152,map03010,map04621,map05152
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019866,GO:0030150,GO:0031090,GO:0031647,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035966,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:1990542
Exons1
EggNOG free text desc.protein import into mitochondrial matrix
EggNOG OGsKOG3277@1,KOG3277@2759
Cds size132
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463909.1299906-CDS-Ecto-sp13_S_contig65991:64..1961681463909.1299906-CDS-Ecto-sp13_S_contig65991:64..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65991 65..196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65991.17443.1prot_Ecto-sp13_S_contig65991.17443.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65991 65..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65991.17443.1

>prot_Ecto-sp13_S_contig65991.17443.1 ID=prot_Ecto-sp13_S_contig65991.17443.1|Name=mRNA_Ecto-sp13_S_contig65991.17443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MLPNQVCETRTAKTFAKLSYEKGVVLARCPGCHNIHLIADRLG*
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mRNA from alignment at Ecto-sp13_S_contig65991:65..196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65991.17443.1 ID=mRNA_Ecto-sp13_S_contig65991.17443.1|Name=mRNA_Ecto-sp13_S_contig65991.17443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65991:65..196- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCCAAATCAGGTGTGCGAGACGAGGACGGCCAAGACCTTCGCCAA
GCTGTCCTACGAGAAGGGGGTTGTCTTGGCCCGGTGCCCCGGCTGCCACA
ACATACACCTCATCGCCGACCGATTAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65991:65..196-

>mRNA_Ecto-sp13_S_contig65991.17443.1 ID=mRNA_Ecto-sp13_S_contig65991.17443.1|Name=mRNA_Ecto-sp13_S_contig65991.17443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65991:65..196- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCCAAATCAGGTGTGCGAGACGAGGACGGCCAAGACCTTCGCCAA
GCTGTCCTACGAGAAGGGGGTTGTCTTGGCCCGGTGCCCCGGCTGCCACA
ACATACACCTCATCGCCGACCGATTAGGGTGA
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