mRNA_Ecto-sp13_S_contig65916.17432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65916.17432.1
Unique NamemRNA_Ecto-sp13_S_contig65916.17432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65916.17432.1 vs. uniprot
Match: A0A6H5JHG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG2_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.090e-61
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:    1 VVRLLKKMSIDVAAIRASHEANQLNAQGPGGRDSAAPPGEPQNARSIGAAGNGTQEAGVQAPAPAGPPNARWFTWFTDPIGAAVNGMGGGLPGMGETAPHGTDAAVHDMEEAXXXXXXXX-------ALDDREEPQ 387
            VVRLLKKMSIDVAAIRASHEANQLNAQGPG R+SAAPPG PQNAR IGAAGNG QEAGVQAPAPAGP NARWFTW TDP+GAA NGMGGGLPGM ET  HGTDAAV+DMEE XXXXXXXX       ALDDREEPQ
Sbjct:   58 VVRLLKKMSIDVAAIRASHEANQLNAQGPGRRESAAPPGGPQNARPIGAAGNGMQEAGVQAPAPAGPQNARWFTWLTDPVGAAFNGMGGGLPGMEETPTHGTDAAVNDMEEXXXXXXXXXXXXXXXXALDDREEPQ 193
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BLAST of mRNA_Ecto-sp13_S_contig65916.17432.1 vs. uniprot
Match: D7FSQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ8_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.330e-42
Identity = 95/132 (71.97%), Postives = 96/132 (72.73%), Query Frame = 1 
Query:    1 VVRLLKKMSIDVAAIRASHEANQLNAQGPGGRDSAAPPGEP---QNARSIGAAGNGTQEAGVQAPAPAGPPNARWFTWFTDPIGAAVNGMGGGLPGMGETAPHGTDAAVHDMEEAXXXXXXXXALDDREEPQ 387
            VVRLLKKMSIDVAAIRASHEANQLNAQGPGG +SA PPG P   QNAR I                      A WFTW TDPIGAA NGMGGGLPGM ETAPHGTDAAV DMEE XXXXXXXX LDDREEPQ
Sbjct:   59 VVRLLKKMSIDVAAIRASHEANQLNAQGPGGMESAHPPGGPRGPQNARPIXXXXXXXXXXXXXXXXXXXXXXAGWFTWLTDPIGAAFNGMGGGLPGMEETAPHGTDAAVSDMEEXXXXXXXXXXLDDREEPQ 190
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BLAST of mRNA_Ecto-sp13_S_contig65916.17432.1 vs. uniprot
Match: A0A6H5JEM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.510e-7
Identity = 28/58 (48.28%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:  163 QEAGVQAPAPAGPPNARWFTWFTDPIGAAVNGMGGGLPGMGETAPHGTDAAVHDMEEA 336
            QEA  Q+PAPAGP  A WFTW TDP GAA N +G              +AA++DM +A
Sbjct:    2 QEAAAQSPAPAGPQYAPWFTWLTDPFGAAFNDLG--------------EAALYDMADA 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65916.17432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHG2_9PHAE1.090e-6184.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSQ8_ECTSI1.330e-4271.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEM0_9PHAE4.510e-748.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65916contigEcto-sp13_S_contig65916:299..688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_002880.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463908.1439638-UTR-Ecto-sp13_S_contig65916:298..3191681463908.1439638-UTR-Ecto-sp13_S_contig65916:298..319Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65916 299..319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463908.1551955-CDS-Ecto-sp13_S_contig65916:319..6881681463908.1551955-CDS-Ecto-sp13_S_contig65916:319..688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65916 320..688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65916.17432.1prot_Ecto-sp13_S_contig65916.17432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65916 320..688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65916.17432.1

>prot_Ecto-sp13_S_contig65916.17432.1 ID=prot_Ecto-sp13_S_contig65916.17432.1|Name=mRNA_Ecto-sp13_S_contig65916.17432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MSIDVAAIRASHEANQLNAQGPGGRDSAAPPGEPQNARSIGAAGNGTQEA
GVQAPAPAGPPNARWFTWFTDPIGAAVNGMGGGLPGMGETAPHGTDAAVH
DMEEAASHNVEEAALDDREEPQ*
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mRNA from alignment at Ecto-sp13_S_contig65916:299..688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65916.17432.1 ID=mRNA_Ecto-sp13_S_contig65916.17432.1|Name=mRNA_Ecto-sp13_S_contig65916.17432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65916:299..688+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGCGCCTCCTGAAGAAGATGTCGATCGATGTGGCTGCGATAAGGGC
CTCTCATGAGGCAAACCAGTTAAACGCACAAGGACCTGGTGGGAGGGACT
CGGCTGCCCCACCCGGCGAGCCCCAAAATGCTCGGTCCATCGGTGCTGCC
GGTAACGGCACGCAGGAGGCTGGCGTCCAAGCTCCCGCACCCGCTGGGCC
CCCAAACGCTCGGTGGTTCACCTGGTTCACCGACCCTATCGGTGCTGCTG
TCAACGGCATGGGGGGGGGACTACCCGGAATGGGGGAGACTGCCCCACAC
GGCACCGATGCTGCCGTTCACGACATGGAGGAAGCCGCCTCACACAACGT
GGAGGAGGCCGCCCTTGATGACAGGGAGGAGCCCCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65916:299..688+

>mRNA_Ecto-sp13_S_contig65916.17432.1 ID=mRNA_Ecto-sp13_S_contig65916.17432.1|Name=mRNA_Ecto-sp13_S_contig65916.17432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65916:299..688+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGATCGATGTGGCTGCGATAAGGGCCTCTCATGAGGCAAACCAGTT
AAACGCACAAGGACCTGGTGGGAGGGACTCGGCTGCCCCACCCGGCGAGC
CCCAAAATGCTCGGTCCATCGGTGCTGCCGGTAACGGCACGCAGGAGGCT
GGCGTCCAAGCTCCCGCACCCGCTGGGCCCCCAAACGCTCGGTGGTTCAC
CTGGTTCACCGACCCTATCGGTGCTGCTGTCAACGGCATGGGGGGGGGAC
TACCCGGAATGGGGGAGACTGCCCCACACGGCACCGATGCTGCCGTTCAC
GACATGGAGGAAGCCGCCTCACACAACGTGGAGGAGGCCGCCCTTGATGA
CAGGGAGGAGCCCCAGTAG
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