mRNA_Ecto-sp13_S_contig65900.17428.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65900.17428.1
Unique NamemRNA_Ecto-sp13_S_contig65900.17428.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65900.17428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65900contigEcto-sp13_S_contig65900:387..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.9424763-UTR-Ecto-sp13_S_contig65900:386..3941681463907.9424763-UTR-Ecto-sp13_S_contig65900:386..394Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65900 387..394 +
1681463907.9745452-UTR-Ecto-sp13_S_contig65900:700..7141681463907.9745452-UTR-Ecto-sp13_S_contig65900:700..714Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65900 701..714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.956286-CDS-Ecto-sp13_S_contig65900:394..7001681463907.956286-CDS-Ecto-sp13_S_contig65900:394..700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65900 395..700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65900.17428.1prot_Ecto-sp13_S_contig65900.17428.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65900 395..700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65900.17428.1

>prot_Ecto-sp13_S_contig65900.17428.1 ID=prot_Ecto-sp13_S_contig65900.17428.1|Name=mRNA_Ecto-sp13_S_contig65900.17428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MFPDIDTYMMRLNNIADIFLMECLLKDVVWSTLMQLWVVESIKTGKVFSS
EISDMMRKIVSFRLQKCQEKPVEIDNVNQFGRQKMFSNEYGYHAYNECMM
I*
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mRNA from alignment at Ecto-sp13_S_contig65900:387..714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65900.17428.1 ID=mRNA_Ecto-sp13_S_contig65900.17428.1|Name=mRNA_Ecto-sp13_S_contig65900.17428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=328bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65900:387..714+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAGCGGTATGTTTCCTGACATTGACACGTACATGATGCGGCTCAACAAC
ATAGCCGATATTTTTCTGATGGAATGCCTATTGAAGGACGTAGTATGGTC
TACTCTGATGCAACTCTGGGTAGTAGAGAGCATCAAGACCGGAAAGGTGT
TTAGTTCTGAAATCTCAGATATGATGAGGAAGATCGTTAGTTTCAGACTG
CAAAAATGCCAGGAGAAACCCGTCGAAATCGACAACGTTAATCAATTTGG
GCGCCAGAAAATGTTTTCGAATGAGTACGGATATCATGCATACAACGAGT
GCATGATGATTTGAGTCGAAGCATATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65900:387..714+

>mRNA_Ecto-sp13_S_contig65900.17428.1 ID=mRNA_Ecto-sp13_S_contig65900.17428.1|Name=mRNA_Ecto-sp13_S_contig65900.17428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65900:387..714+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCCTGACATTGACACGTACATGATGCGGCTCAACAACATAGCCGA
TATTTTTCTGATGGAATGCCTATTGAAGGACGTAGTATGGTCTACTCTGA
TGCAACTCTGGGTAGTAGAGAGCATCAAGACCGGAAAGGTGTTTAGTTCT
GAAATCTCAGATATGATGAGGAAGATCGTTAGTTTCAGACTGCAAAAATG
CCAGGAGAAACCCGTCGAAATCGACAACGTTAATCAATTTGGGCGCCAGA
AAATGTTTTCGAATGAGTACGGATATCATGCATACAACGAGTGCATGATG
ATTTGA
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