mRNA_Ecto-sp13_S_contig659.17426.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig659.17426.1
Unique NamemRNA_Ecto-sp13_S_contig659.17426.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: D7G3E1_ECTSI (Similar to camp and camp-inhibited cgmp 3,5-cyclic phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E1_ECTSI)

HSP 1 Score: 894 bits (2309), Expect = 0.000e+0
Identity = 530/549 (96.54%), Postives = 542/549 (98.72%), Query Frame = 1 
Query:  145 MFLRGCREPMEQYRECLMKNLKDWHGRGLVRQKLSAVKIHQLGQMNITRFDHQKLIMDRIRHLSDIPSMARYSVGKANVAEVEAAVHVAPRRKGSSSNSGSSSNINRVLSGESVSSGSLGENATQSDASMSEETGDGGKKSKGHHRRRSTRHGLGIKGGRRGSLAIDKTWEAINKSRAEADGGVKQKQLDTIRRRISNVGTQPPELKPFNPAEFAREQNQASSNDFSLVGSKESSETNGASKGPGRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMINKKDGEDFSEQDAGVMEMCAVKVALALDTSFAALVSAENEWAKAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGSLGGRRGSATLSGLEDGGLQEVPQISNRRGSGTSKADVQKLKRRTEYGKE 1791
            MFLRGCREP+EQYRECLMKNLKDWHGRGLVRQKLSAVKIHQLGQMNITRFDHQKLIMDRIRHLSDIPSMARYSVGKANVAEVEAAVHVAPRRKGSSSN+GSS+N+NRVLSG+SVSSGSL ENA+QSDASMSE+TG+GGKKSKGHHRRRSTRHGLG+KGGRRGSLAIDKTWEAINKSRAEADGGVKQKQLDTIRRRISNVGTQPPELKPFNPAEFAREQNQASSND SLVGSKESS+TNGASKG GRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNE FNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQM+NKKDGEDFSE DAGVMEMCAVKVALALDTSFAALVSAENEWAKAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGSLGGRRGSATLSGL D GLQEVPQISNRRGSGTSKADV+KLKRRTEYGKE
Sbjct:    1 MFLRGCREPLEQYRECLMKNLKDWHGRGLVRQKLSAVKIHQLGQMNITRFDHQKLIMDRIRHLSDIPSMARYSVGKANVAEVEAAVHVAPRRKGSSSNTGSSNNVNRVLSGDSVSSGSLAENASQSDASMSEDTGEGGKKSKGHHRRRSTRHGLGVKGGRRGSLAIDKTWEAINKSRAEADGGVKQKQLDTIRRRISNVGTQPPELKPFNPAEFAREQNQASSNDSSLVGSKESSDTNGASKGAGRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNERFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGEDFSEHDAGVMEMCAVKVALALDTSFAALVSAENEWAKAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGSLGGRRGSATLSGLGDDGLQEVPQISNRRGSGTSKADVEKLKRRTEYGKE 549
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: A0A835ZCA7_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA7_9STRA)

HSP 1 Score: 264 bits (674), Expect = 4.660e-76
Identity = 180/453 (39.74%), Postives = 256/453 (56.51%), Query Frame = 1 
Query:  127 DLVDAGMFLRGCREPMEQYRECLMKNLKDWHGRGLVRQKLSAVKIHQLGQMNITRFDHQKLIMDRIRHLSDIPSMARYSVGKANV-AEVEAAVHVAPRRKGSSSNSGSSSNINRVLSGESVSSGSLGENATQSDASMSEETGDGGKKSKGHHRRRSTRHGLGIKGGRRGSLAIDKTWEAINKSRAEADGGVKQKQLDTIRRRISNVGTQPPELKPFNPAEFAREQNQASSNDFSLVGSKESSET--NGASKGPGRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMINKKDGEDFSEQDAGVMEMCAVKVALALDTSFAALVSAENEWAKAAGRR 1476
            DL+D   FL+     +EQYREC M NL    GRGL R+KL+ V++H L  MNITR DHQK+IM R++ L  IP++      +++V A    + HVA   + +SS +          +G S + G   + A Q+    S                  + +G G +  +  S+   +TW AI  +R + D   K K+LD +R R S +              F    N A+S   +  G++ S  T  + A +G G R S+      +A    +D A   RQRA EYGN ALK+ T E QLK+LK+ +L     T+ C++AT+MF+D   + LFF+DG+  I FP+ KG+AG+ A TG  L+VNDPY++  FN+ +DK +GFVTRNILCEPI+SR GG ++AVLQMINK+ GE F+EQD+ VMEM  + V+ AL+  F AL+S ++EWA    RR
Sbjct:    4 DLIDVRTFLKPTG--LEQYRECFMTNLWGGDGRGLSRRKLAQVQMHHLPDMNITRHDHQKIIMARLKELDRIPAVGDEMTPESDVPATGYHSSHVALLARANSSVT--------PQTGSSRAPGKGADGARQTLLRRSSSN--------------DSANGAGRRSRKGSSIDATQTWAAIQTARQQLDKDNKTKRLDQMRSRQSTLIRIDLTKAASRRGTFI---NPATSTPRNATGTEPSVSTAESRAQQGAGHRLSV------RAISMPVDAAAEARQRAQEYGNKALKSNTLENQLKELKRTLLQQLCDTMSCEKATIMFLDQHNEVLFFYDGDTCIRFPMSKGVAGYCATTGERLLVNDPYSDPRFNQAIDKQTGFVTRNILCEPIRSRMGGALLAVLQMINKRGGEGFTEQDSEVMEMAVLNVSEALENRFRALISHQSEWAGTKARR 423
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: A0A6H5JRH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH4_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 7.260e-69
Identity = 126/152 (82.89%), Postives = 126/152 (82.89%), Query Frame = 1 
Query:  859 GASKGPGRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQ-------------------------ILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQV 1239
            GASKG GRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQ                         ILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQV
Sbjct:    2 GASKGAGRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQVGQQQTLHGDSICCRSWNARSCVFVILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQV 153
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: A0A7S4D805_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D805_HETAK)

HSP 1 Score: 142 bits (357), Expect = 1.260e-34
Identity = 76/180 (42.22%), Postives = 115/180 (63.89%), Query Frame = 1 
Query:  922 QARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQILADFVSTIGCDRATLMFVDTPAQELFFFD-GNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMINKKDGEDFSEQDAGVMEMCAVKVALALDTSFAALVSAENEWA 1458
            Q  + EA+  RQ+A +YG++AL+    +  L  +++++L  F   I C+RA+LMFVD   +E+FFFD  + +  FP   GIAGHV +TG  L + D Y++  FNR++DK +GF TRNILC PI++  G  +VAV+QM+NK+D + FS  D G++E C   VA  L   +  L+ A  ++A
Sbjct:   24 QGELTEAQKARQKARDYGDAALRQERVKKDLLAIRQRVLGRFQQIINCERASLMFVDDRRKEIFFFDESDHQRRFPSSAGIAGHVVSTGERLNIPDAYSDPRFNREMDKLTGFHTRNILCAPIRTYTG-QIVAVVQMLNKRDEDHFSHNDEGIIEACGTDVAEVLAPKYRDLLEAMEDFA 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: A0A6H5JRT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT3_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.350e-31
Identity = 99/143 (69.23%), Postives = 102/143 (71.33%), Query Frame = 1 
Query: 1378 MEMCAVKVALALDTSFAALVSAENEWAKAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGSLGGRRGSATLSGLEDGGLQEV----PQISNRRGSGTSKADVQKLKRRTEYGKEV 1794
            MEMCAVKVALALDTSFAALV+AENEWAKAAGRR                    XXXXXXXXXXXXXXXX                RRGSLGGRRGSATLSGL DGGLQEV    PQISNRRGSGTSKADV+KLKRRTEYGKE+
Sbjct:    1 MEMCAVKVALALDTSFAALVAAENEWAKAAGRRRSSGSGSIDDSEPVLTAAEAXXXXXXXXXXXXXXXXSDGADATAGGG-----RRGSLGGRRGSATLSGLGDGGLQEVGARVPQISNRRGSGTSKADVEKLKRRTEYGKEL 138
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: A0A7S2LDR6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDR6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.030e-30
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 1 
Query:  952 RQRALEYGNSALKATTREGQLKDLKKQILADFVSTIGCDRATLMFVDTPAQELFFFDGNM-RIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMINKKDGEDFSEQDAGVMEMCAVKVALALD 1416
            R+ AL YG SA +    E  L  L K+ +  F  TI C+R +++F D    ELFFFD  + R +  L  GIAG+VA  G    V+D Y +  FN+ +D+ +GF T+++LC PIK+R G  ++AV+QM+NKK GE F++ D  +M  C+ KVA AL+
Sbjct:   41 RELALHYGESAQRTACAELNLNKLGKRAMNSFKKTIACERCSILFCDRDKNELFFFDDKLVRFSLSLELGIAGYVAKHGEIANVSDVYVDSRFNKNLDEQTGFRTKSLLCAPIKNRSGDCIIAVIQMLNKKGGESFTDHDEDLMRNCSFKVAEALE 196
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: A0A1G3ITC9_9PROT (Guanylate cyclase n=1 Tax=Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15 TaxID=1802023 RepID=A0A1G3ITC9_9PROT)

HSP 1 Score: 104 bits (259), Expect = 2.250e-19
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1 
Query: 1057 IGCDRATLMFVDTPAQELF--FFDGNMR--IAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMINKKDGEDFSEQDAGVMEMCAVKVALALDTS 1422
            +G +R TL   D    EL+  F  G  R  I F   +GIAGHV  TG  L+V+DPYNN HFNRQVD+ +GF TRNI+  P+K+ KG  ++ V Q +NKK+G  F E+D  V+E    +  +AL +S
Sbjct:   30 LGAERTTLFLNDPQTGELYSRFAQGTFRREIRFLNTQGIAGHVFQTGESLLVDDPYNNPHFNRQVDQQTGFTTRNIIAVPVKTVKG-EIIGVAQCLNKKEGA-FGEEDLRVLEAMTSQATVALQSS 153
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: A0A6H5JUX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.310e-18
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:  106 VKKDAGTDLVDAGMFLRGCREPMEQYRECLMKNLKDWHGR 225
            +KKDAGTDLVDAGMFLRGCREPMEQYRECLMKNLKDWHGR
Sbjct:    1 MKKDAGTDLVDAGMFLRGCREPMEQYRECLMKNLKDWHGR 40
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: A0A2V9K0E4_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9K0E4_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 4.110e-18
Identity = 58/141 (41.13%), Postives = 84/141 (59.57%), Query Frame = 1 
Query: 1012 LKDLKKQILADFVSTIGCDRATLMFVDTPAQELFFFDGN----MRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMINKKDGEDFSEQDAGVMEMCAVKVALALDTS 1422
            L +L  +IL    S +  +R TL  VD    E++           I  PL KGIAGHVA TG  + ++D Y +  FN +VDK +GF TRNI C PI+S K G ++AVL+++NKK G  F+++DA  + + +  VALAL+ +
Sbjct:  183 LSELLARILDVAKSQVEAERGTLFLVDEKKSEMWSLIAQGLEKQEIRLPLGKGIAGHVAETGEIVNISDAYADSRFNTEVDKQTGFRTRNIFCMPIRS-KSGKIIAVLELLNKKKGS-FTDEDADFLLVLSGHVALALENA 321
[Close]
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Match: UPI0014259ED2 (probable 3',5'-cyclic phosphodiesterase pde-5 isoform X2 n=4 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259ED2)

HSP 1 Score: 98.2 bits (243), Expect = 1.430e-17
Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = 1 
Query: 1057 IGCDRATLMFVDTPAQELF--FFD------------GNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMINKKDGEDFSEQDAGVMEMCAVKVALAL 1413
            +  DRA+L  VD  +QEL+   FD                I FP+ KG+AGHVA +G  L + D Y +E FN+QVD  +G+VT+++LC PIK R  G+++ V+QM+NKK+G  F++ D    E  AV   LAL
Sbjct:   53 VSADRASLFLVDNKSQELYARIFDVGDGQGSQVVTKDQKEIRFPIGKGVAGHVATSGENLNIPDAYLDERFNKQVDIQTGYVTKSLLCMPIKIR--GHIIGVVQMVNKKNGA-FTQADEHAFETFAVYCGLAL 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig659.17426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E1_ECTSI0.000e+096.54Similar to camp and camp-inhibited cgmp 3,5-cyclic... [more]
A0A835ZCA7_9STRA4.660e-7639.74SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JRH4_9PHAE7.260e-6982.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4D805_HETAK1.260e-3442.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5JRT3_9PHAE1.350e-3169.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2LDR6_9STRA1.030e-3042.95Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1G3ITC9_9PROT2.250e-1946.03Guanylate cyclase n=1 Tax=Rhodospirillales bacteri... [more]
A0A6H5JUX4_9PHAE1.310e-1897.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V9K0E4_9BACT4.110e-1841.13Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
UPI0014259ED21.430e-1742.11probable 3',5'-cyclic phosphodiesterase pde-5 isof... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig659contigEcto-sp13_S_contig659:5155..21675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score905.2
Seed ortholog evalue1.6e-260
Seed eggNOG ortholog2880.D7G3E1
Model size2226
KEGG rclassRC00296
KEGG koko:K13293
KEGG ReactionR00191
KEGG Pathwayko00230,ko04024,ko05032,map00230,map04024,map05032
Hectar predicted targeting categoryother localisation
Exons17
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
Ec32 ortholog descriptionGAF domain
Ec32 orthologEc-09_001160.1
EC3.1.4.53
Cds size1758
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.5850637-UTR-Ecto-sp13_S_contig659:5154..52171681463907.5850637-UTR-Ecto-sp13_S_contig659:5154..5217Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig659 5155..5217 +
1681463907.7620425-UTR-Ecto-sp13_S_contig659:21227..214221681463907.7620425-UTR-Ecto-sp13_S_contig659:21227..21422Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig659 21228..21422 +
1681463907.778204-UTR-Ecto-sp13_S_contig659:21465..216751681463907.778204-UTR-Ecto-sp13_S_contig659:21465..21675Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig659 21466..21675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.596429-CDS-Ecto-sp13_S_contig659:5217..52341681463907.596429-CDS-Ecto-sp13_S_contig659:5217..5234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 5218..5234 +
1681463907.605427-CDS-Ecto-sp13_S_contig659:5956..61001681463907.605427-CDS-Ecto-sp13_S_contig659:5956..6100Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 5957..6100 +
1681463907.6141653-CDS-Ecto-sp13_S_contig659:8017..80991681463907.6141653-CDS-Ecto-sp13_S_contig659:8017..8099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 8018..8099 +
1681463907.6245182-CDS-Ecto-sp13_S_contig659:9213..94451681463907.6245182-CDS-Ecto-sp13_S_contig659:9213..9445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 9214..9445 +
1681463907.633284-CDS-Ecto-sp13_S_contig659:9887..100181681463907.633284-CDS-Ecto-sp13_S_contig659:9887..10018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 9888..10018 +
1681463907.642069-CDS-Ecto-sp13_S_contig659:10664..107691681463907.642069-CDS-Ecto-sp13_S_contig659:10664..10769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 10665..10769 +
1681463907.650737-CDS-Ecto-sp13_S_contig659:12013..120971681463907.650737-CDS-Ecto-sp13_S_contig659:12013..12097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 12014..12097 +
1681463907.6599147-CDS-Ecto-sp13_S_contig659:12715..128891681463907.6599147-CDS-Ecto-sp13_S_contig659:12715..12889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 12716..12889 +
1681463907.6690524-CDS-Ecto-sp13_S_contig659:14443..145151681463907.6690524-CDS-Ecto-sp13_S_contig659:14443..14515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 14444..14515 +
1681463907.6802392-CDS-Ecto-sp13_S_contig659:15348..154801681463907.6802392-CDS-Ecto-sp13_S_contig659:15348..15480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 15349..15480 +
1681463907.6892743-CDS-Ecto-sp13_S_contig659:16566..166201681463907.6892743-CDS-Ecto-sp13_S_contig659:16566..16620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 16567..16620 +
1681463907.7017617-CDS-Ecto-sp13_S_contig659:17637..177121681463907.7017617-CDS-Ecto-sp13_S_contig659:17637..17712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 17638..17712 +
1681463907.7150953-CDS-Ecto-sp13_S_contig659:19040..191711681463907.7150953-CDS-Ecto-sp13_S_contig659:19040..19171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 19041..19171 +
1681463907.7309494-CDS-Ecto-sp13_S_contig659:19711..199191681463907.7309494-CDS-Ecto-sp13_S_contig659:19711..19919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 19712..19919 +
1681463907.7405615-CDS-Ecto-sp13_S_contig659:20372..204591681463907.7405615-CDS-Ecto-sp13_S_contig659:20372..20459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 20373..20459 +
1681463907.7511928-CDS-Ecto-sp13_S_contig659:21197..212271681463907.7511928-CDS-Ecto-sp13_S_contig659:21197..21227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig659 21198..21227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig659.17426.1prot_Ecto-sp13_S_contig659.17426.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig659 5218..21227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig659.17426.1

>prot_Ecto-sp13_S_contig659.17426.1 ID=prot_Ecto-sp13_S_contig659.17426.1|Name=mRNA_Ecto-sp13_S_contig659.17426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=586bp
MLINHSESSRQESSVKKDAGTDLVDAGMFLRGCREPMEQYRECLMKNLKD
WHGRGLVRQKLSAVKIHQLGQMNITRFDHQKLIMDRIRHLSDIPSMARYS
VGKANVAEVEAAVHVAPRRKGSSSNSGSSSNINRVLSGESVSSGSLGENA
TQSDASMSEETGDGGKKSKGHHRRRSTRHGLGIKGGRRGSLAIDKTWEAI
NKSRAEADGGVKQKQLDTIRRRISNVGTQPPELKPFNPAEFAREQNQASS
NDFSLVGSKESSETNGASKGPGRRESLSPNVHDKARQARIDEAKAKRQRA
LEYGNSALKATTREGQLKDLKKQILADFVSTIGCDRATLMFVDTPAQELF
FFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQVDKDSGFVT
RNILCEPIKSRKGGNVVAVLQMINKKDGEDFSEQDAGVMEMCAVKVALAL
DTSFAALVSAENEWAKAAGRRRSSGSGSRRDSSVDDREPVLTAVEAAAAA
ASATAAVAAQRKSDDADATAGGGRRGSLGGRRGSATLSGLEDGGLQEVPQ
ISNRRGSGTSKADVQKLKRRTEYGKEVRDSSVGLL*
back to top

mRNA from alignment at Ecto-sp13_S_contig659:5155..21675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig659.17426.1 ID=mRNA_Ecto-sp13_S_contig659.17426.1|Name=mRNA_Ecto-sp13_S_contig659.17426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=16521bp|location=Sequence derived from alignment at Ecto-sp13_S_contig659:5155..21675+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTAGCAAGTAGCATTTCTTACCGCCGTGGAACAGAGGGCCAAGCATCA
GTATTGCTTGAAGATGCTCATCAACCACAGGTTGGTGCTGCTTCCTGCCG
ATTCCCTTTCCTGCGAGACCTCAGATGTGCGTATTCAGTCTGGACTACGG
TAGAGATCTATGTAGACTACAGCAGAATCATGCGTTTTTCCCGCCGTACA
GCAGCATTTATGTACGTACAGCCTTCCTGCTGTTGCAATAATGTCTCCGT
GTGTAGATTAGTGCGAACAAAGTGGTCTGCACTGAGGGATATGGGTAGTC
TTTCTGTGCGTGTATTTATTTCTCCTTCAATACCCCCAATGATCTACCTG
CGTTGCATCGACGGTTCTATCTTTTTCAGCCAAAATAAATGCTCTGAGAT
GGTCGGGTCTGTAAGATAAAGACTTAGACTATTCACAATGCTACTCAGTC
AGCGCTGACTGAGTACCGGTGCCACCCTTTTGCGGCTTGCGAAATCGGCA
ACTCTGGCACTCGTTGCCCAGTTTTCTGGTGCGGAGGAGACACGATGCGC
TTGTTGCTTGTTTCTCGGATGATGCGGAAGAGCGTAATACTACACAAGCT
GGCGTTAAATGCAGCTTGGCTGGCGAAGGGGACGGTGTGCTTCGTATTGG
AACTAAGCGGGGTCGTGGTCGCGTGCTCACTTGTTCATCTTAATCCACTG
CTGCGGTAGTCTACACACTAATGTCTGCATTAGGCTGTCACATAATTCAC
GTGGTACCGAACAAGAGATTTCCTTGGCTCCCCATATATGTACATCCCAC
AGCGAAAGCAGCAGGCAAGAATCGAGCGTGAAGAAAGATGCTGGGACAGA
CCTTGTTGACGCCGGTATGTTTCTGAGGGGATGCAGGGAACCCATGGAGC
AGTACCGCGAGTGCCTCATGAAGAACCTGAAGGATTGGCACGGAAGGTAC
AGCAGTACTACGGGCATTTTCCCGTCCCATGCGCGATGTCTGTACATGTA
TCATGAGTTTTACGATGTACAGTATGTACCCCCTGAGTAGTTGCAGCCTC
GATTCGTCCACAACAACAGTAGCAGACGGCTGTACATGTAGTGGGCACAC
ATTCACAGGGGGAATCAGTCATCACCGCACAGGGCCGCGTTCGGCACGTT
TCGCCTGTAGCTCCCGGGGATGTAGTGTTTGATCCAGCCATCCTCTTCAC
GGTGGAGGTACAGTATCAGACCGAACGCACCATGCTACTCGGCTGCACCG
GGTCTCCACACTTTCTATAGTTTTCTCAAACGGCCCATGGGTGCCCTATG
GGTGCCTCATGGGGCACTCATGGGTGCCCCATTGGTGCCCCATAGGCTGC
CCATGGGTGCCCCATGAGGCACACATGGGGCACCTATGACCCATATGGGT
AGCCCATGGGCATGCCCAAAATGCCCATGACGGGCGGCCCATGGGCATGG
GGGGCTGCCCATGAGCGGCCCACCATGGGCAACCCACCGTGGGCAGCCCA
TGGGCAGCTACAATGGGCAGCTCATCGTGGGAGCCTTGGTCACACATTGA
TAGCAACTCTTTAGGACTAACCGATGTTGAACGTAGCAAGGCTAGGTTCT
TCACGTGAGCAAGGCTAGGTTCTTCACGCGAGCAAGGCTCGGTTGCTCAG
CGACGTGCTCGGAATGCGGGACGGGGAGAGGGCGCTGGAGAGGAATCGGC
CGCCAGAACAAATCTGTCAAAAAATTCACTGAAGAATCGGCCGCCAGTTT
TGTCAAAATCATGGGCTGCCCATAGGCGGCCCATTGCCATGGCAGCCCAT
GATGAGCATGCTCATGGGCAGCTCATGATGGGCACTTCATAGCCTGCCCA
TGGGGCACTTGACAAAACTGTCGGTAGTGTGGGAGATTGGCTGCACCTGG
CCGAACAGCGTGGAAATTTACCACCCGAAGGACTGCCAATAACCAGGCAC
AAAAGTTTTCTGGCCAGTGACGTCGGTATATTCGTTCGAGTCTGTATCCC
GATTGTGGACTTCTTCAGTTTCAAAGTATCCTACCCTCCGCGGCAGAGCC
CCTGCCTAGGGTTCGCCTTTCTGCCCAAAGCCTGTTGGGATGTAACCTTT
GTGATAGGTGTATCCCTTGATGTGGCAAACACTGTGTAGTGACAGCGTGT
AGAGGCTCACAGAGTGACTGTAAAATATACTTGTGCGTATGGTTTGAATT
GGCGCTTGGTTGGCCGAAAGGTAAGAAATGGAGAGTAGAGGAATGGAGGA
GAGGAGTGATCAAGAGGGGGCGGGCACCATGGAGGTGAGCCATCCATCTC
ATCCCGGAAAGGAAACACACACGGACTATCGCAACGTGCCGGTCACGGAA
ACAGTCGGTTAATCCATCCTATGGCAACAGTATAAGAATATCCTACTGGA
CAATGGTCCGACAGACCACACTCCTATGGTTCAATGGGTGACTCGAAGGT
GTGTACAACGATCCGATTACTGAATCAACGTACCGGTAACGATTCCAGTA
ACACTCCTAAGGTGAATACCTACGTACTGTTGTTTACAGCAGCACAAACA
CTAATGACTGACATTGAATATTCTAACGAAGAATTCCTCTCGACAAAGCA
GCACCTGTGGAGATGGATATCGAGAGAGCCGTGGTCACTCTTGTACTTCA
TTCCAAACATTTATTGTCTTGTGTCACCGCGATGGTGCTGACATCAACGA
CAGGCACGGTTGGCACACAAACGTAGAGTTTGATCTCTTTCCCCTTTGAA
CAAAAACTCCGAGAGAGACACGTGGCTAATGCGCAACACGATTATAGACG
ACACGGTTCCGCTCCCTGCGCGACTTCCAACTGCACTCAAGCCCCTGTGC
CTCATGGCCCCAGGGGACTCGTCCGCCAAAAGCTATCGGCTGTGAAGATC
CACCAGCTGGGGCAGATGAACATCACACGGTTCGACCACCAGAAGGTACG
ACAGACAAGTTTTTTTGTTTGTTGACTGATTGATTCAAATGCTACAAACT
CCATCAAGGTGCTGTGTCTAACGGGGTGGCATGTACGGCCAAGGGGTAGT
TGGCACACAACTGCAGATGTTTCAGGCAAATCTGCGGACGGGAGGGCCCC
ACCTCGCCCTGTGAGGGGGTGCCGAAAGAGGCGGAGACATGGCGCCCCCC
CTAGACCGATTTTTCACAACTTGGTTGCTTCACAACCCAGTTTGTGCCAA
CACAGATGAGGTGGTTTCGGAAACTTCTCGCTGAGGGCTGTCGGTAGAGT
GATCGGGCTCTTTTTTCCGCAGCCCCTTAGTTGTGGAGCAATCGAGCTTT
GAAAGTCGGTCTTCCGACTGTCACTGAAAAGCACGGTACGGTATACGGTA
TGGTACAGACAATCTTGGTTGTGGAGCAATGGAGGTTTGAAAGTCGGTCT
AGGGGTGGTGCCATCTCTCCGACTCTTAAAGTATACGGCTCCGCAGGCAC
GAGACCCATCGCCCTCTTTGTGCCGTACTGCTCGGAAGGGTTCCCCCCGG
CAGGCACGGATTGACTGGCGTCACACCCGTTCTCTCTTACCCGCACCTGC
TTCATTCCGACTGTACTTTGCATGGATGCAATTACCCCGGTTGTTTAGCG
ACTACGGCATGTACGACCATGAGTAACCTCCCCCCGTTCCCTGCCGCAAA
GAAATACGCGGGCTCGACTGGGAACGCCGATCAACACTGTTTTTGTTCCA
TCGAATTAGAAGCCAAACCAGACAGAGTACTTAGAGAGGGAGGTTTACCA
ATGACCAAGACAACGAATTTACTGCAGCCCGTCGGTAAAAAGTGCTACGA
AGTACTGTGCTTGCTACCGTGTTTCATGCGTGTCCTCATCGTCGCCACGG
TAGTACTCGAGCTCGCACGCCAACGCTGAAGCCGAGGTTCAACGGCACCT
CCCCCCTCCCACGCTAAGAGGGCACACCTCTCCTCACACGCGTACACACG
CTCACCCTTGCGCGATGAATACTCATGACAACTAGGAACACAAGAATTTC
GCTGCTGCAATCCCCGATACCATGACACGACGCATGCACGAACCCCCCCG
TCGGCGCAGCTCATCATGGACCGAATCCGACACTTGTCGGACATCCCCTC
GATGGCGAGGTACTCCGTCGGCAAGGCCAACGTCGCGGAGGTAGAGGCGG
CCGTGCACGTGGCACCCCGGCGGAAAGGGAGCAGCAGCAACTCCGGCAGC
AGTAGCAACATAAACAGGGTGCTTTCCGGCGAGTCCGTCTCCTCCGGCTC
GTTGGGGGAAAACGCCACCCAATCGGACGCGTCCATGTCAGGTAAATTCT
GCGTTGCGCGAAGCGTGTGGCTGGGGTTTGTGGGGGTTCTGCAATGCTTG
CATGGGTTTGGATTGCCAGTCGCCTTGTGCTACCCTCGTAGGAGCACCCG
TCGAGAGCGAAGCGCTCGACAGGACGAGTGGTTGGGTTTCAACGAAAACG
CCGTGCGTGCACATTTATGGAAATAGCAGCAGCGTGCCTGTGCCATCCCT
GTTTCTCTTTTTGGGGCGGCGTTCCTACACCTTTCGGCAGCACGTGTTTG
GAAGCACCCACCCCTGGGTGACATGCGTTGCAGAATAGACGGGAAAACGC
TAAGAAATCCGGCCCTTCGGAAGAGGATGAATCAGAACGCGAAATACCCG
CTTTTCCGCGGCCCCTCTTTCGTTTTCCCCTCCATCGCGCCCCCCCCCCC
TGATAAAATCGGTCTTGGGAATCCAACAAAAAGAGGAAACGGGCGATGGA
GGAAAAAAGAGCAAGGGTCATCACAGGCGGAGGTCGACGCGGCACGGTCT
TGGGATCAAAGGAGGCCGGCGCGGAAGCTTGGCGATCGACAAGACCTGGG
AGGCCATCAACAAGGTGCTGCAAGAGGGTATCAAGTGTCGCTTTCTTTTC
TTGTGGTACATTTGTTCAATAGAAGGTAGGGTATGGCTGGCAACGCTTCA
TACACACACCGCGAAGGTCATGAGATGGATGGTGACGTGCCTTGTGGAGC
CACAAGACGTTAGCCATGCGCCTACTACTGCTGCGCTTGACAGGATTTGG
TTTACTGTCCTGTTTGCGAGGCCGCAAAACAACTCTGATCGCAATGACCA
CTTAGCTATTGCCAACGAGAATCCAAGTTTTCGATGCGGCTTCGGCAACA
CCACTAATTCGAGAACGATAGTAATAAATGCTTGTATGAAATACATGCAA
TCACAGAAAGACTGCCCGTTCCAGAATATGACCCAATCGAAAAAATTCAT
GAGTCTTTGCACTGAGTGCTTCCAGCGCAAATTTGAGTAAGGTAGGCATT
AGCTTGTTGTAGCACCAGCACAACGCCCACCACCATCTGGTTGGTCAAGA
TTGTCGCAGATCTCAGTGATTCGCTAGATTATTCTACGGCGGGAGAAGCC
ACCCCACCATCGCCGACAAGAGGGAGAGCCTCAACCACGGTTGTGGCATA
GTCTAGCCTTGCAGCACGTCTCCTGAATGATGTGATTGGATGCGGGGCGA
TTGTTAACAGTCCCGGGCAGAGGCCGACGGCGGCGTGAAGCAGAAGCAGC
TCGATACCATCCGTCGCAGAATCTCCAACGTCGGGACGCAACCGCCGGAG
CTCAAGCCATTCAACGTAAGTTTTGCCGTTGCTGTCGAAGGCATTGTTCA
CACCTTAAACCGAACCGACGGCATTGCCTGAGCCGTTTCATCCGACCTAC
CGAACGAAACGGCCAGCGATATCCAAAGATCTCTGCTACAACATGAAGCT
CTATCAACAGAGCAAACTACAAGGACGGCAAAGTCCAGCGTTTGACGTGG
TAGTACCGAACATTTTCTAGGGAACCAAGTACTGCGCCCAATCGACGAAA
CGTCCCAAATGTTCCTCCTCAGACCCCTCACCGCTAGTACTCATTCAGTT
TTTGTTTCGGAGGGTGATCATCCTCCTGTTTCTTTTCGGAGTTGGAACGG
CGGTGTCCACAATCTCGAAAGCGAGTGTTTTGTTCAAATGATCGAGACAA
CGATGTAACCGACCGAATAAGCCCCCCCGCCCTGCCCCACCTACCTCTTG
GTTCCTCCCTGACCCCGTTTCTATATGAGCCTGGAGAGTCGGTGGTGCAG
CCGGATACCAGTAGCCTTCGCAGGGTTTTCGTATTTTGGAAACATGATGG
AAAAAGCATACAATCGAGGAAGTTGGGTTAGAGTTAGGGGTGGGGAATAG
GATCTGCGTACTCTCTACCTGCTCTAATTCCTTACAATACTTCATTTCCC
GTGAAGGCGTTCCTCCAATAACAGCACGGCAAACATGCGCCAATGGAGAA
AAATCCGAGCAAGTCAGCGGCTTGGCAAGGCGCCGCCAATGACAAAATCT
CCTATTCTATGTTGCATGCTTTACATATAAAAGTGTTGGTAGGAAGCCCG
TCCGTTACAAGGCGCTCGCCGGCGTCATGAAAACTCTGCGTTTGTCGGCC
TGTTTTACATAGTATTTTTCGTGATTTTAGGCTTGTTGTCCACGACGAAC
CCAAGCCTCTCTCGTCTTCTTCTCCATGCATGAAAGACGCCACAAAATCT
CCTATTCTATGTTGCATGCTTTACATATAAAAGTGTTGGTAGGAAGCCCG
TCCGTTACAAGGCGCTCGCCGGCGTCATGAAAACTCTGCGTTTGTCGGCC
TGTTTTACATAGTATTTTTCGTGATTTTAGGCTTGTTGTCCACGACGAAC
CCAAGCCTCTCTCGTCTTCTTCTCCATGCATGAAAGACGTCTGTGGCTCG
TGGTGCTCACGTACCCTAGGGCGTAGTCTCTCCGACTCAAAACTTCAAAT
CCACGTTTTCTCTTGTTCTCTATTTTCTCATCTGCACGTGCGTGCAAACT
TGCACGCAGCCCGCGGAGTTTGCTAGGGAGCAGAACCAGGCTTCCAGCAA
CGACTTTTCGCTAGTAGGAAGCAAGGAGAGCTCGGAAACAAATGTGAGAG
GCGGAACGACCTAAGTGCTGCGTCCTTGGGTTCCACCCCCCCCCACGGGC
TTGTAGGAAACGTCTTTCCGTGGGGCCGGCAAGGCAACCTTCTTTTCTGG
CCTGGTCTGAAACGTGGGGGTGGGGTTCAATGATTCAGAGGCTTCTGAGT
CACGCCACGAGAACTGTTCATGGATCTACGATCTCCTTAAAACGGAAAAA
AAGCGGGTGGACAATGGCCCCCGTTTCAAACCGGGACGGCGGAAATGGTC
CAATGCAATCGAGAGATAAGTAATAAAGGGACCGGGGGGCGGTAGAATCG
AGATCGTTTTGTCGCCGTCTTAGGGGCCGTGTAGGGATAGGAGTTGTCCC
CAACGCTTCCACCCTCCTTTGTTGTGCAGCGCATTCGATGTTTCCAAGTC
TCGGGCCAAGTTTTCCCGTTTCGAATCAGCGGAGTCCATGCGGCACGCGA
AGCGCTCAAGCCTGAGAGTCAAGATCACATCATGCGGACCTATGAAAAGC
GTCCCGTTTTATTACAAAGCTTCGAACGTCGCCGTATTGTAGGTGGCGGG
CTGATGGCCGTTGTTCATTCCCTCTGGCATGTCTTGCTTGATTCCATCCT
GTTTTCGGTAGGGAGCCTCCAAGGGACCAGGACGGAGGGAGTCGCTCTCG
CCCAACGTACACGACAAGGCTCGGCAGGCCAGGATCGACGAGGCCAAGGC
GAAGAGACAGCGCGCGTTGGAGTACGGGAACAGCGCCCTTAAGGCCACCA
CGCGCGAGGGCCAGCTGAAGGACCTGAAGAAGCAGGTGGGGCAGCAGCTA
GGCGACAGCATCTGTTGCACGTCGTGGAACGCGCGTTCTTGTGTGTTTGC
TGCGTACGATGAGACCCACAGTTGTAGCGTTATTGAATACCATAAACGTC
GGAGTTCCCCCCCCCACGTTAAGAAAACAACCACCCACATGCCGATCGCA
ACAGCGCCCAACGATCTAGACAAGCACCAGGACCTATTTAGCCCGGGGGT
TGTTCGTCGTTTTTGCCCAGAAAAAGAAAGATCCCCCAGTTCAATTTCCC
CCTGGGGTACAAGATTTCCCACGAGTTCCTCCTGGGGGGGATGTATTTCC
CTTACTTTCTGAGTGCATTTTGTTGCATCGCGGAGCACAAAAGGCACGAT
ATGGGACTGAAATTTCATTTGCAGATCTGCGCTTTGAGCGAGATTTAGGT
GTGCCCTTTGTCACTAGAAGGCGGGTCCTTCTTCTTCTTGAAATCACTCG
CGGGACGAGACAAACTCCCCCAGCTGCTGTCCTCCTTGCTGTCTTTTTTT
CTCTTCGCCTTCGTTGCTCTTACGTTCCTCCTCCCTCTGGTTGTCGAACG
CTTGCCCGTAAACCTTATCCATCTAACGTTCGCCACTCTGTGTGTGTGTG
GTGTGTGGACCATCAGTTTTTTGCACAACCCCCCGGGGGAGGGCTTCCCC
ACGGGGTAGCGTCTGAAAAAAAAAATTACCCCCCCGGTACGTCAATTTTT
CCCCGGGGGTCTTGGATTCAGAAAAAAAAAATGATCCTCTCCCTGGGGGG
AAAAGTCCGACGTTTCAGTAGATGGTCTTGACTGAAACGGACTTCAGCAG
AGAAAAACAACGTATCACGACAAATGGAACGATACATCATATTTGAAACG
TTTTTACACGAGCAGCATGGAACGCCGACGGCACGAAGCGAATTATGAAC
AAAAAACATAAGAAAGCTGCATGGTAGCCTCGGAAACTAACGCGGACACA
TAACTACTGCAAATAGCTAGCGACTTCGGGTCTACAGGCCATCTAGATGC
CAGATAGACGAAAACTATGTTGCATGCGAGTGAAGACGATCTTCCTCTCT
TTCTACTGCAATTTCCTGCCTCTCGTGATCGCGGACGACCTTCATTCTGT
GTATGCCCACTGGTTGAATCGTTGTTGAATCCACCTCGAAACTTGGTCGA
ACGTTTTCGTGTGCCCCACTCGCTTGGTGGTACACAGCACGCCCGTGCCG
GAGTTCTTCGCACGAGAAAGCGTTCCACTAGCCCTTCAGCACCCATACCG
ACGTCGGAAGGGTTCAGTTCAAGAGGGTGTACGAGGCAGTTCTCGCTTCT
CGCATCTAGCGCAAGTCGATTTGGTACATTGCGCCCATCTCGTGCCCCAC
GTGCAGAGTGTTTTCGATTCGGGTTCTTTCAGGGAGTTACACACATCCAC
TTGTCATCTTCAAAAGGTATGGCAAGGCGAACCTCAACGAAACTAGCGTA
CAGTAGTACCCGTTCTGCTGCTGCTCATTTTGCCATGAAGCGGACGATAT
TTCTCTCATTTCGATAGAATCGATGCCAATTTAACGCAGATTCTCGCGGA
CTTCGTGAGCACCATTGGCTGCGACCGCGCCACGCTCATGTTCGTCGACA
CGCCTGCCCAGGTGAGCGGAAATATTTTGGGGGCTGAGTGATTCAGGTGG
ATACCTCGCCTCAACTTTGGGCTTTAGGTCGTCAAGTCGAATTTTCCCGA
AGTGAACAAACTCGCAATATTAAGTGAAAACCGCGTTGTCTTGAGTGCAC
ACAACCAAGAGGGAACGAATAGCTAAACCCTCCCGAGAAGAAAGTAGTGG
CGGGGAGGAAGATAGAGATACGACAGAACAACGAAACAAGTCTCCTGTGT
CGGACTTCCCCTGTCTGTGTGATCCAGGCTGGTGTGTCAAACATGTTTCG
ATTAGTGTGTACACAGGCGGCCTGATTCTTCTGTGATGCGAAGATTTCAA
CAACAATTATCCAACCGAAAGTCCAACTGGTGGTGTGCACAAGAACGAAA
TGGGTAGATACTTCAAAGTCGGGCCTGCCCGAGCCTGCCCAGGCCACTCG
CTAAAACGCGTGTAGCACATACTTACCACATTCCCAAAGAGCAGAACGGT
ATTAAAATACGCGAATACCCAGTCAAATCCCACCTCTTGCAAGACAAATA
CCACATATACGAGCTTCTGAGATGAGGAGTCCAGCACTAGACTACAGTAC
CAGGTTCCAAGAACACGGTCCAATACTGTCTTACGCCCCTGCCCCCACCA
CTCGCTAACGTCGGCTCTCCGACACTTACAGAACGCCTCATAACAACCAC
CTTTGGAGGTCCAAGTTACCGACGAATATTGGAACTGTTTTCCCTCTTTC
TAGGAAAAGGGTACGAACACCCGAAAATAATACCAACAATCCCTGTCGTC
CACGCACATCAATTGCCTTTCCAAACTCCCTTCTGAGCTCTTAGGAACTC
TTTTTTTTCGACGGGAACATGCGGATCGCTTTCCCCCTTCGGAAAGGCAT
CGCCGGACACGTCGCAGCAACGGGCATGGGGTTGGTCGTTAATGACCCAT
ACAACAACGAGCATTTCAACCGGCAGGTATGGTGCCAGTGCGTGTGACGA
CATCGGGCGATGTTTCTTACGCTATTCTGCGCATAGCATCACACGCCATT
GTGTATGTTTCAGACCTCGGTGTTTGTCCTGTCACTTCATTGCTTCGGGT
CTCCTCTTACACCTCGCGACGTGGTGTCAGGCAGAAGAGCGAGTATCCGA
AGCAGCAGTCACGGCGTAGATCTGTCGCGCTGCAAGCGAGGTCTTTTCGC
CGTTCTAGATGAGTGACGCTATGCATACACCGTTTACCAATCTTCCTAGA
TGAGAGAAAGTCGAGGTGGTACACCCACGGCGAAGTGAATGTTATCACAT
TGTCATGCTTTCTCGAGCCGCTTCGTTCTCGAGGTGTCATTCTCCGGAAT
TGTTCCGTTCGTTGTGGTGGCAGTGCGTGCTACTCTAGCCTATCATAAAC
CCACAACCTCCTCGCGAAATGACACGTCGAGTGTATGCCAGCGTTGGCAT
TGGGGATGTTGGAATGTTCTTCGAGAGGCAGATGTATGTCTGAACTGGGC
TCGGGTGTTGATTAGAGCCGAATTATCACTTTCTCGGTCATCAAGAAATA
GGCCCGTCTCTGTTTGCGACACCATGACAAGAGAGGAATCAAAGCTCCGA
TCAACGTTTTGCCTCGGTAGAAATGAAAGGTTTTGATTTCGCTAAAAAAG
TTGGATTGCGACAAGCTGAAGAAACGAGGTTTCAGAAGGGAACAAGCTGT
GACTAGGGGGACATTGTTAATGGCGCACGTGCTCTTGGACACGCTATGAT
ACTACCGCAGAATCGTGCGTTAAGCTTCCTGAGAAGTCATCGTCAACGAG
CGGGACCAACACGAGAGAACACAGAAACAGTGCTCTTCCCATAACTTAAC
CCCTCCCTCCGCCTTCGTCATAGGTAACCGGTGCGTCTCCTCTTGTTGGC
TTGGTACCTCAGAAAAAATTGTTTCTTTTGGGAACGCATTGCCACGGGTG
GCATTTGTCGCGTTTCCAACCCCTTCAATAGGGGAGTACATTGAAAATAA
GGCGTAGGACCAATGAAGAACAGTATTCATCGTGGGTTCTCCCGCTTGTC
GTCACTATCCAGGTTGACAAGGACTCGGGCTTCGTGACGAGAAACATCCT
GTGCGAGCCCATCAAGGTAAACCCTCTTTTGAACATGAACGTGCATGTAC
AGACCATCGTCGACGGAACACAAGCGTTTCATGAAGGATGCCCTCTTTTT
TGAGAGCTTCGTCACCGGTCGCTTCATCTCCTTCATGTTGACTTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TTCACGTCAAGGCTCCCGCCCCGCCCGCCGAGAGGGAAGGGGTTCAGCGA
GTGTTCCATCTCTAAACGATCCTTCTTGAACAAAATAACGGCAACAAGTA
GAGGGCGCGGTTTGATTCGTTACCCTTGATAGGCGCTGATCATTCTCTAG
TGTCTGGTGTTTGTCCGACGTGATGCCGCCGACTGTAGTGCGGTCGTCAT
GCTTTTAAGGGGATTTCGCTGTCGTTGTCCGGGCCCTCGGATTCTTCGAT
TGTGCAAAAAAAGCAGGTCCTACGAAGCATATCGGTATCCCGTAACCGGT
GGGACAAACGTTCCGCGCTTGGAAACCGAGCGTAGATATTGGCGCGCCGG
CAGTCGTCGATCGGTCCGTTCACCAGACGATTTTACACGAGCGTGACCCC
GGCAGAATTTCCTCGATCTCACTTAGACGCCCTCCGCCATACTACTCACC
CCCCCGGCACTGTTCACGCCCGCTTCATGCCCGCTGCTGCGCTTCCCGGC
TTCTGTCGCCGCCACCGCCGCCGCCGCTGCCGCCACCGTCGTCGAAATAC
GCCTGGGTTCCGGTGTTGCGGGCGGGATTGGCGGTGGCACCGATGTTGTT
GGTCTCAACGCTGGTGTGCAATGCCGCCTTCCAATACTTCCTGGCTGGTG
GGATCTACCGTTGCCGGCGACGGTGACGCTGCTGCTGCCGCCGCCGCGGG
TTGGGGCTTTGCTTGACGCCGGTCCTGCCACGGGCACGCCATTGGGTCCC
GAATAATCGGACGGTTACATGAAAACATTGAAGTCGCGGAAGGGGGGCAA
CGTCGTGGCGGTTCTCCAGATGATCAACAAGAAGGATGGCGAGGACTTCA
GCGAGCAGGTAAGACAGTTCGTAACACCTTCCCCTGTCCACCCCTTCACT
TTGCACACAGGACCACATGAAAGAACCACACGGGGGGGTAGAAGAATAAT
ACCAAGGGAAGTTCTTTGTTGGCTGTTAAAGAGTCAAAGATAATCGAGCC
TTTCTGAATTCTAAGTGTCGATCTTGGCGTCCATCTCCTCGTTAATTGTC
CGGTCGGTGGTTTCGTCACACACTCGAAAGAGTCATTACCGGTCCCTCCC
CACATCGACGGTGAGACACGCTGGTTCATGTTTTGGTTCGCTGAGGCCAT
GGTGCTTTCACCGATAAGCCGGCCGAAGCGATATTGACAAGACGAGGCCT
TGTGCACGTCACATACGGACGGAAGAAGTCGACAATCCATTCATCCCTGG
ATCCGTTGTCGCGCCGCCTTTGATGTGAAATCGGGCGACCCCCCCCCCTC
CCCCCCCCTCCCCACCCCCGATAATTGCCATCGGGGTTGGGTATTCGTGG
TTTGCAACGACGTTGTAAAACAAGCTGCCCCCCCCGGTGTTGGCCATCGG
GGTTAGGGTTTCGTCGCTTGGCAAAAGCGCTGCAAAACAAGCCACCCCCT
CGGTGTTTGCCATCGGGATTGGGTTTTCGTCGCTTTCGCTTGGCAACGAC
ATTGTAAAACAAGCCAAGTCACTTCGTGAACTCGGCAACCAGGCAACCGT
TTTTTTAACCTCTGTTTCTCTTTTGCGGTAACCATAATGGCGGTCGAGTA
GATCGTACTGTGTGGGGTCGCGAACCCTCACTCCGAGCAAGGGGTGTGAT
CGCACCACGTTGTGTTAAAATGGTCAAGCACCCTCGAGGCAGTTACACAG
TGCTTACAACTGTCTCTGAAAGTGAAAGCACCAGTTAATAAATTAGGCGA
TACGTAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCGCCATCC
CTCGAACTACGACTGAATGCCTCTAAGTCAGAATAGCGCCTTAATGCGAC
TCGCCAAATACCTCACGGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTC
CGATGAGAACCCGGCGTGCTCGGTCCCGGCTTTGTAGGGATGCGAGGTCA
ATGTGCGGTATGTACGACTATGAGTACACTCCCCCATCCCCCCCCCACCT
CACCTTTGGCAACGTATGCAGGAACGATTGGCCATCAGCGATTGGTCCTG
TGAGGAAAACGCTCCGTCCTCCTACGGGCGCGTGGTCAATGGCCCATCCG
CAAAGGCATGCACAACACGAGTACGCCCTCCCCCCCCCAGCCCAAAAAAA
ACAATATTTTGCCCTCCACTCCCCCACCCCACGCAGGACGCGGGCGTGAT
GGAGATGTGTGCCGTGAAGGTAGCCCTAGCCCTGGACACCTCGTTCGCTG
CGCTCGTGTCCGCCGAGAACGAGTGGGCGAAGGCTGCAGGGCGCCGACGA
AGCTCCGGCAGCGGAAGGTATTTGTCCCCCCCGCTAGTTTTTTGCACCGT
GATATTGGACCGAGGTGTAGACCCCCTGTGGTCGCCCATGACAGAGAAGG
TATCGGAGCACCGGCGGCATTTTTGGACCTTGTACCCATCCCCGCTCGAC
CAGACGGGAGTTGGCCGTGGTTTTCATCGTTGCCAAGCTCAGCCAGGCCG
CTGGAGGATTATTTCTGCCTTTGGTAGGCCCGATCTTTCGCCCTCCATAG
GGCTGACGGAAGGAAAAGTGAATGTCGATGGACTTACACTTCCGCTCAGA
ACGTGCACGGTCGCGGTGAGGCACGCAAATATGGTAACACCCCACACACC
CGATCAGTACCTTGTAGTGGCGGCTAGCAGCTTGATGCCTTGCGAATAGA
TGTCGCGTCACCTTAAACAATATCAAGAGTATCAACAGCAACATCAACAA
CGACAACGACAACAACAACAACAGCAGCAGCAGCAACAGCAACAACAACA
ACAAACNNNNNNNNNNCAACAACAACAACAAACAACAACAACGCCGACAA
TGCGCAGCAGACGTGACAGCAGCGTCGACGATCGCGAACCCGTGCTCACG
GCTGTCGAGGCCGCCGCAGCCGCCGCGAGCGCAACGGCCGCAGTCGCCGC
CCAGAGAAAGAGCGACGACGCCGATGCGACAGCAGGGGGGGGGAGGCGAG
GCAGCCTGGGAGGCCGTCGAGGTTCTGCGACGCTGTCGGGGCTGGAGGAT
GGTGGGCTCCAAGAGGTGGGGGCACGGGTTTGCAGAGAGTGCACGATACC
GCTCGTGCAATCGATCGAAGACGTCACTTCGAAAGTTTGGCTAGCGTAGC
TGCTGTGAGCATCTTTTCGTCTTGTATTGTGTAGTTCGGACGGGTGCCTT
GGCGTGCTTGTTCCTTGGGGGCGTGGAGTCCCAGTCCACGCTATGGGAGG
TGGACGGCGGTTGACTCCCAACAACGGGCGAACGTGTAGGCCTCTCGTTC
AATCCAGCCGAAACCTGCGCCTGATTCCGATGTAGCCGGTGCAAACGTCG
TGTATGCGCTCTGGGTCTACGGGTGATTTGGTGGGCATTGTAGCGGTGCT
AGGTCGTGCTCTTGATGTTTACTCATTGCTCAGTTCGCAGCGTTCACGGT
TTCTTTCGTTCCGCCACGTTTTTAGCGTTCCGCCGTCAACAACCGTCCAT
ATGGAACAACGGAAGCAGGTGCCGCAGATCTCCAACCGGAGGGGGAGCGG
GACATCGAAAGCGGACGTGCAGAAGCTCAAGCGTCGAACGGAGTACGGTA
AAGAGGTACGGGACTATGATGGGAGACACCCGGTGATTGAGAGCACATTT
TTTGCGACCTCTGCAGCTTGTTCATGTGTTGTATGTGCTGAAGTCGTCGT
CGCCTCGGGCATTGTGGCTTTGGTCGTCTCGCTGTATGTTTCTGCTTCCC
GCTCACAGTCGAAACGTTGGGCGCCCCGATACCCGTACGCCTTGTGGTAA
TACGCTCGTCGTCAATGTTGAATCGCTCGTTGTCGCTTTCCGTCATCGGT
ACCGTCGCCGCCGCCGCCAGATACGATGAACACACCGTATGAGGGCGAAG
GAACCGACCGCCACCGTTTGGGCGGTCGGCACTTTCGCCCTCATGAGGTG
TATTCATCGTAAGGGACGACGGCGGCCACACATCTATGATGACCGTGCAC
GACAATGAGAAAATCAAGTGTTGGCGACGAACGAAACACAAGGTGCAAGG
ATATCGTTGAGCTGAGACGCCCAATATTTCGGCTGTAACCGAGAACCAAC
AACCACCAATGAATCGACGAAACGTTCAGATTCATCACGACGCGAGCGCA
CAGCTTAAGCGGGGCAGCTTCCTCTCTTGGTCGTCGATTCGGCCGACGAT
TGGAGGGTAGCGGGCGCGAGACGTATCCTGGTACACGCTCCACCGGAAAT
GACTCTCTTCCAAATTTTCTCGTCCTGCACTCTACAGCCGTCGCTCATCC
CCCTCTTCAACCCTACTCCTCTGTCGCTGGACTTTTTAACAAGGTTCGCG
ATAGCTCGGTTGGGCTTCTGTGAGGGATGGGGCATGTACTCGCCCACCGC
GCGGTCAGGATCCCAACATCGGGGCAAACCTCCAACCTGCCCTACCCACC
GACCGGTCGATGCCTCATGCCTGGATGAGGTTCAAGGTTTTCCTCCTTCA
GGGAACGCCTTTGGATGCGCCAGGAAGACAATGAAGAGGAACGGTTCGAT
ACCACCGCGAAGGGCCAAGTGACGCGCTCTCCATTTTCTGGTTTTGAACG
TCTGCCTCGAGTCACTTCGCCATCACGGTCGGGCACCGTTGATGTGTTGA
GTGTGCGTCGACGGCAGGCCCCGTACGGTAGATGATTCACCAGTAAATTC
CAATTTAACTAATAGAGAGATGAACCTTAACACTTGTTCTCCAGATCGTC
CTTTTATAGCGCAGTGCGCTGTGAGAAACAGACCCCTCACCTATCATCTC
ACATCAGAAAAATACATGCGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig659:5155..21675+

>mRNA_Ecto-sp13_S_contig659.17426.1 ID=mRNA_Ecto-sp13_S_contig659.17426.1|Name=mRNA_Ecto-sp13_S_contig659.17426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1758bp|location=Sequence derived from alignment at Ecto-sp13_S_contig659:5155..21675+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCATCAACCACAGCGAAAGCAGCAGGCAAGAATCGAGCGTGAAGAA
AGATGCTGGGACAGACCTTGTTGACGCCGGTATGTTTCTGAGGGGATGCA
GGGAACCCATGGAGCAGTACCGCGAGTGCCTCATGAAGAACCTGAAGGAT
TGGCACGGAAGGGGACTCGTCCGCCAAAAGCTATCGGCTGTGAAGATCCA
CCAGCTGGGGCAGATGAACATCACACGGTTCGACCACCAGAAGCTCATCA
TGGACCGAATCCGACACTTGTCGGACATCCCCTCGATGGCGAGGTACTCC
GTCGGCAAGGCCAACGTCGCGGAGGTAGAGGCGGCCGTGCACGTGGCACC
CCGGCGGAAAGGGAGCAGCAGCAACTCCGGCAGCAGTAGCAACATAAACA
GGGTGCTTTCCGGCGAGTCCGTCTCCTCCGGCTCGTTGGGGGAAAACGCC
ACCCAATCGGACGCGTCCATGTCAGAGGAAACGGGCGATGGAGGAAAAAA
GAGCAAGGGTCATCACAGGCGGAGGTCGACGCGGCACGGTCTTGGGATCA
AAGGAGGCCGGCGCGGAAGCTTGGCGATCGACAAGACCTGGGAGGCCATC
AACAAGTCCCGGGCAGAGGCCGACGGCGGCGTGAAGCAGAAGCAGCTCGA
TACCATCCGTCGCAGAATCTCCAACGTCGGGACGCAACCGCCGGAGCTCA
AGCCATTCAACCCCGCGGAGTTTGCTAGGGAGCAGAACCAGGCTTCCAGC
AACGACTTTTCGCTAGTAGGAAGCAAGGAGAGCTCGGAAACAAATGGAGC
CTCCAAGGGACCAGGACGGAGGGAGTCGCTCTCGCCCAACGTACACGACA
AGGCTCGGCAGGCCAGGATCGACGAGGCCAAGGCGAAGAGACAGCGCGCG
TTGGAGTACGGGAACAGCGCCCTTAAGGCCACCACGCGCGAGGGCCAGCT
GAAGGACCTGAAGAAGCAGATTCTCGCGGACTTCGTGAGCACCATTGGCT
GCGACCGCGCCACGCTCATGTTCGTCGACACGCCTGCCCAGGAACTCTTT
TTTTTCGACGGGAACATGCGGATCGCTTTCCCCCTTCGGAAAGGCATCGC
CGGACACGTCGCAGCAACGGGCATGGGGTTGGTCGTTAATGACCCATACA
ACAACGAGCATTTCAACCGGCAGGTTGACAAGGACTCGGGCTTCGTGACG
AGAAACATCCTGTGCGAGCCCATCAAGTCGCGGAAGGGGGGCAACGTCGT
GGCGGTTCTCCAGATGATCAACAAGAAGGATGGCGAGGACTTCAGCGAGC
AGGACGCGGGCGTGATGGAGATGTGTGCCGTGAAGGTAGCCCTAGCCCTG
GACACCTCGTTCGCTGCGCTCGTGTCCGCCGAGAACGAGTGGGCGAAGGC
TGCAGGGCGCCGACGAAGCTCCGGCAGCGGAAGCAGACGTGACAGCAGCG
TCGACGATCGCGAACCCGTGCTCACGGCTGTCGAGGCCGCCGCAGCCGCC
GCGAGCGCAACGGCCGCAGTCGCCGCCCAGAGAAAGAGCGACGACGCCGA
TGCGACAGCAGGGGGGGGGAGGCGAGGCAGCCTGGGAGGCCGTCGAGGTT
CTGCGACGCTGTCGGGGCTGGAGGATGGTGGGCTCCAAGAGGTGCCGCAG
ATCTCCAACCGGAGGGGGAGCGGGACATCGAAAGCGGACGTGCAGAAGCT
CAAGCGTCGAACGGAGTACGGTAAAGAGGTTCGCGATAGCTCGGTTGGGC
TTCTGTGA
back to top