mRNA_Ecto-sp13_S_contig65874.17424.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65874.17424.1
Unique NamemRNA_Ecto-sp13_S_contig65874.17424.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65874.17424.1 vs. uniprot
Match: D7FMD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD8_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 3.960e-45
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:    1 RRRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVWLRTLFDVRSDVWFRVQERTQKAGGTGWFED 231
            R+RAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAV LRTLFD RSDVWFRVQERTQKAGGTGWF+D
Sbjct:   29 RQRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKAGGTGWFQD 105
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BLAST of mRNA_Ecto-sp13_S_contig65874.17424.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.390e-22
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RRRAEVAWEDLKQRLPDEVLENMCAILGR-DDAEAGEAAGLRAMAAVWLRTLFDVRSDVWFRVQERTQ 201
            RRRAE AWED+K RLPD+VLE +CA+LG+ D  E GE  GLRAMAAV LRTLFD+RSDVWFRVQ++TQ
Sbjct:   25 RRRAEEAWEDMKMRLPDQVLEQVCAVLGQADGGEGGE--GLRAMAAVLLRTLFDIRSDVWFRVQQQTQ 90
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BLAST of mRNA_Ecto-sp13_S_contig65874.17424.1 vs. uniprot
Match: A0A6H5JCW6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 9.420e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   52 EVLENMCAILGR-DDAEAGEAAGLRAMAAVWLRTLFDVRSDVWFRVQERTQ 201
            +VLE +CA+LG+ D  E GE  GLRAMAAV LRTLFD+RSDVWFRVQ+ TQ
Sbjct:   47 QVLEQVCAVLGQADGGEVGE--GLRAMAAVLLRTLFDIRSDVWFRVQQETQ 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65874.17424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMD8_ECTSI3.960e-4594.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FNE2_ECTSI9.390e-2273.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCW6_9PHAE9.420e-1270.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65874contigEcto-sp13_S_contig65874:2..743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size234
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.4898343-UTR-Ecto-sp13_S_contig65874:1..551681463907.4898343-UTR-Ecto-sp13_S_contig65874:1..55Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65874 2..55 +
1681463907.5023413-UTR-Ecto-sp13_S_contig65874:433..4671681463907.5023413-UTR-Ecto-sp13_S_contig65874:433..467Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65874 434..467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.511906-CDS-Ecto-sp13_S_contig65874:467..5871681463907.511906-CDS-Ecto-sp13_S_contig65874:467..587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65874 468..587 +
1681463907.5211136-CDS-Ecto-sp13_S_contig65874:719..7431681463907.5211136-CDS-Ecto-sp13_S_contig65874:719..743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65874 720..743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65874.17424.1prot_Ecto-sp13_S_contig65874.17424.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65874 468..743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65874.17424.1

>prot_Ecto-sp13_S_contig65874.17424.1 ID=prot_Ecto-sp13_S_contig65874.17424.1|Name=mRNA_Ecto-sp13_S_contig65874.17424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MMRKPARRRGFEPWRQFGCAHCSTSAPTSGLGSRSALRKQVERDGLKM
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mRNA from alignment at Ecto-sp13_S_contig65874:2..743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65874.17424.1 ID=mRNA_Ecto-sp13_S_contig65874.17424.1|Name=mRNA_Ecto-sp13_S_contig65874.17424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=742bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65874:2..743+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGGAGGGCGGAGGTGGCTTGGGAAGACCTGAAGCAACGGCTCCCTGA
CGAGGTAGGTTGTTGCAGGAGGATGGGCCAGCGGGAGCACCACTGCACCA
GTGCTTGGAAATATTTGGGAAAAACCTTGTCTTCTGATGGATCATGGGCA
CGCGGCATTTGGTATTTTTCTGGTGGCCTGAAGTTATTCCTCTTGTCGTG
AAGTCAAGAGGCGCTGTCGCCGCCGGCGTGTGTCTTGGCTGCTTGTAGTT
GGAAGGCTGGTAGTGTTTTTCGTCAGGTGCGAGCGACAGTTGGAGTCACC
AAAGCTCCACCACCAGCACAACGCCCAACACGCTACAACAGCACTGCCGC
CACCAGTACAACATCAACCCCGACACATGCCAACCGCAACAAGGCTCGTC
ACACCGTCTAACAAGGCTGTCTGTTCGCGCAGGTTCTGGAGAACATGTGC
GCCATCCTGGGGCGCGATGATGCGGAAGCCGGCGAGGCGGCGGGGCTTCG
AGCCATGGCGGCAGTTTGGCTGCGCACACTGTTCGACGTCCGCTCCGACG
TCTGGTTTAGGGTCCAGGAGCGCACTCAGAAAGCAGGTGAGATGTGGTGC
TGATTCATTCTGACCTGGGGTCTGGGAACGCACTCAGATTGTCTTGTGTA
TGTTGGATGTCCGGATGTATTTTTCTTGCTGCTTGGGCGTGCGTCCCGCG
GTACGGGAACGCCCTCAGGTGGAACGGGATGGTTTGAAGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65874:2..743+

>mRNA_Ecto-sp13_S_contig65874.17424.1 ID=mRNA_Ecto-sp13_S_contig65874.17424.1|Name=mRNA_Ecto-sp13_S_contig65874.17424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65874:2..743+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCGGAAGCCGGCGAGGCGGCGGGGCTTCGAGCCATGGCGGCAGTT
TGGCTGCGCACACTGTTCGACGTCCGCTCCGACGTCTGGTTTAGGGTCCA
GGAGCGCACTCAGAAAGCAGGTGGAACGGGATGGTTTGAAGATG
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