mRNA_Ecto-sp13_S_contig6587.17422.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6587.17422.1
Unique NamemRNA_Ecto-sp13_S_contig6587.17422.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: D8LAW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW0_ECTSI)

HSP 1 Score: 503 bits (1295), Expect = 8.040e-174
Identity = 254/273 (93.04%), Postives = 261/273 (95.60%), Query Frame = 1
Query:  769 MITPLEISRERLEPASLRKYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKLIGTSQQHSTKIQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRFIYWNQEDSIVNPAGKERTVDDKAADRGKGVPAVVPAIVENCEQFALSEGVDLFKAKCDLTNAR 1587
            MITPLEISRERLEPA+LRKYHPSSARWIMIQRFLDVKGPEYERVL+VD GQIFFQANPFDIIGDPGVYTFTDDKLIG SQQHSTKIQDCLGASVLA+LADKPAIHSGVSLGTS+LVV+YARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGP+TDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRR+IYWNQEDSIVNPAGKER VDDKAA        VVPA VENCEQFALSEGVDLFKAKCDLTNAR
Sbjct:    1 MITPLEISRERLEPAALRKYHPSSARWIMIQRFLDVKGPEYERVLIVDAGQIFFQANPFDIIGDPGVYTFTDDKLIGKSQQHSTKIQDCLGASVLAKLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPMTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRYIYWNQEDSIVNPAGKERAVDDKAA--------VVPATVENCEQFALSEGVDLFKAKCDLTNAR 265          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: A0A7S2RBK6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBK6_9STRA)

HSP 1 Score: 211 bits (536), Expect = 4.900e-59
Identity = 126/379 (33.25%), Postives = 192/379 (50.66%), Query Frame = 1
Query:  619 DLCLGMAVGISPAQLVTFAASFREFAPSADLFMFFEAPTSERFNDIIDTFMITPLEISRERLEPASLRKYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTF--TDDKLIGTSQQHSTKIQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRFIYWNQEDSIVNPAGKERTVDDKAADRGKGVPAVVPAIVENCEQFALSEGVDLFKAKCDLTNARVGSLGDCCAACGGRAGCQAFSFDESFGLCYMKNCDRPNTPGPSATAQSITSGIR 1749
            DL +G+  GISP  L  F  S R  +PSA L ++ ++P  E    I++ + +T LE S   +EPA LRKYHPS+ RW +I R+L      Y RV++ DV    FQA+PF+   D G + F   + + IG    +   +QDC G +VL ++  +  I SGVS+G++  V+ Y  +M   + +  F  CE+ GVD G+H+ L+++  +  +  F QS+G V ++ A +  + G +V N +   V +V++Y     L +  F  F++W             R  D                  E C  + + EGVDLFK +CDLT       G+CCA C    GC+AFS   S   C++KNC+   T  P      + SG +
Sbjct:   32 DLVVGLGTGISPENLAVFCGSLRAVSPSAALVLYLDSPLPELHRRIVERYDVTALEFSVSLIEPAFLRKYHPSNYRWPLIHRYLKDHANAYRRVVLADVRDTMFQADPFERF-DRGFFAFHGVESRTIGQCGWNGGWVQDCFGRTVLQQVQSEAIICSGVSMGSTDEVLAYLGEMQRTMETKEFATCERNGVDQGVHNVLVHTKRIPNLKVFSQSNGWVANLQAQRARIHGGQVFNRQDELVAVVHQYDRRRDLQSAYFDTFVFW------------PRKTDG-----------------ELCAGYTVEEGVDLFKGRCDLTVTGSQGTGECCAKCTATPGCKAFSIAGS--QCFLKNCNTVTTRSPMP---GVASGFK 375          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: L1IE52_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IE52_GUITC)

HSP 1 Score: 140 bits (353), Expect = 8.520e-35
Identity = 75/212 (35.38%), Postives = 123/212 (58.02%), Query Frame = 1
Query:  772 ITPLEISRERLEPASLRKYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKLIGTSQQHSTKIQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTDVPAGKFDMSGSR--VTNLEGREVPIVYRYVENAILTAEVFRRFI 1401
            +T L ++R  L+PA+L KYHPS+ RW+++Q FL   G  + +VL+ DV    FQ++PF I+ + G++TF++   I     ++  I+ C G   +  LA K  I SG+SLGT+  V  Y   M++ ++   F ACE+ GVD G+H+ L++ G + G+   DQ +GPV  + + K  MS +   V N       IV++Y  +  +  + FR+F+
Sbjct:    1 VTVLPVNRVSLDPATLGKYHPSTTRWVLMQSFLKRVGHNFNKVLLADVRDTGFQSDPFSIVSEAGLWTFSESVNIMGDDWNTGWIRSCFGQGKVDELASKEIICSGISLGTTMHVQSYLDAMAKEINGPNFAACERNGVDQGIHNVLVHQGSLPGLHVLDQYNGPVAHLQS-KVGMSFNNDVVINSRNERAVIVHQYDRDVFVMRKFFRQFV 211          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: A0A7S4P7D4_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P7D4_GUITH)

HSP 1 Score: 142 bits (359), Expect = 2.370e-33
Identity = 105/385 (27.27%), Postives = 177/385 (45.97%), Query Frame = 1
Query:  610 GAGDLCLGMAVGISPAQLVTFAASFREFAPSADLFMF---FEAPTSERFNDIIDTFMITPLEISRERLEPASLRKYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPG----VYTFTDDKLIGTSQQHSTKIQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRFI--YWNQEDSIVNPAGKERTVDDKAADRGKGVPAVVPAIVENCEQFALSEGVDLFKAKCDLTN-ARVGSLGDCCAACGGRAGCQAFSFDES-FGLCYMKNCDRPNT---PGPSAT 1722
            G+ D+ +G+A  I   QL  F  S R ++   D+ +F    E    +   +    F+I   + S   +E    RK+HPS+ RW +I +F  +   +Y+RVLM DV    FQ +PF+I+ D       +T   D+ IG    +   ++DC G  + +RL+ KP I SG+S+GT   V  Y + MSE +    F ACE+ GVD G+H+ L+++  +  +    Q  G V ++ A        +V N+      +V++Y  +  L   +   ++   W++E                   +G+GV          CE + + +  +LFK   D+       +  DCC  C   A C++F+      G C+ K+  +P++   P P  T
Sbjct:   89 GSTDIAIGIAHKIHAVQLAVFVKSLRAYS-KCDIVLFVDELEKEVEKIGREAGVNFII--FKTSESMVERT--RKFHPSTIRWPLIHQFFSLHPDKYKRVLMADVRDTAFQGDPFEILKDSSSSFLAFTGVQDRTIGQCGWNGGWVRDCFGPEMFSRLSSKPIICSGISMGTMDAVKSYLQAMSEHIMKQEFAACERNGVDQGVHNVLVHTDKIPHLRVNRQDDGLVANMQAHVMKFRSGKVYNVNNELARVVHQYDRDLELQRSLLDSYVDFEWHKES------------------KGEGV----------CEGYTIRDNYELFKGLGDIKEEGNYPTFQDCCRQCNKLANCKSFTHKAGGTGTCFFKSASQPSSDPIPAPFLT 440          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: L1IEM2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IEM2_GUITC)

HSP 1 Score: 144 bits (362), Expect = 3.470e-33
Identity = 103/387 (26.61%), Postives = 178/387 (45.99%), Query Frame = 1
Query:  619 DLCLGMAVGISPAQLVTFAASFREFAPSADLFMFFEAPTSERFNDIIDTFMITPLEISRERLEPASLRKYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKLIGTSQQHSTKIQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLSSAG-FQACEKAGVDAGLHDYLLYS-GGVQGVLRFDQSSGPVTDVP---AGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRFIYWNQEDSIVNPAGKERTVDDKAADRGKGVPAVVPAIVENCEQFALSEGVDLFKAKCDLTNA---RVGSLGDCCAACGGRAGCQAFS-FDESFGLCYMKNCDRPNTPGPSATAQSITSGIRL 1752
            DL LG+   +       F  S R F+PS+D+ +F  A T  R + ++    +  ++ + E +  A++R +   + RW++ +RFLD+ G  Y RVL+ DV Q+ FQ+NPFD++  PG+Y F++   +   +  S  I+ C  +SVL  L DK  ++ G  +G+   V+ Y + M+  + S      C   GVD G+H+ + Y+      ++  +Q++G V ++    A  ++     V N  G    +V RY     +   +F  ++ W+  +                  +G G           C ++ L   V+LFK   D  ++   RV S   CC  C     C  F+ FD++   C+MK+  R   P         TSG ++
Sbjct:  179 DLALGLVDKLHEEYTSIFVLSLRRFSPSSDIVLFLRASTP-RLDALLKNHGVISVKYAEEDISQAAMRNHSSLTYRWLVFERFLDLHGKNYRRVLLADVVQVAFQSNPFDVMKKPGLYAFSESISLSQDEWTSNWIRACFESSVLTPLPDKETLNVGYVMGSIDRVLPYVKVMAATIRSVTRADGCRGEGVDQGVHNVVAYTDASFSDLVVQNQNNGAVGELQSPFAMTYNAGVKAVINGMGVAAAVVLRYYHVPEVMKLLFNSYVVWDVHN----------------VSKGTG----------GCWRYMLMTHVELFKGHGDFADSSVERVASPLGCCEICDRNQQCNGFTHFDQT---CWMKSISRSPKPEEGFPVPESTSGWKI 535          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: A0A7S3HHB0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHB0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.720e-14
Identity = 69/247 (27.94%), Postives = 106/247 (42.91%), Query Frame = 1
Query: 1024 IQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLS-----SAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTDVPAGK----FDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRFIYWNQEDSIVNPAGKERTVDDKAADRGKGVPAVVPAIVENCEQFALSEGVDLFKAKCDLTNARVGSLGDCCAACGGRAG----------------CQAFSFDESFGLCYMKNC 1689
            I+DC G  V   +   P I SGVS+GT   V DY  +MS VL      S+ F ACE+ GVD G+H+ L+++G +  V    +   PV ++ A           S +T+  G +  +V++Y   + L   +  +++ W           KE T                      C  F +S   DLF+ KC+L + RV S   CC  C  +                  C +F++ E  G+CY+K+C
Sbjct:   30 IKDCFGEKVFESVKANPIICSGVSMGTIDGVKDYVAKMSSVLLGQDSLSSSFPACERNGVDQGVHNVLVHTGALSNVTVRYEYDFPVVNLQAYPQLQVTPADPSVLTSEAGVKYALVHQYDRLSPLQTALAGQYVDWVNLQDPQAEWEKEPT----------------------CAMFTVSYEKDLFRGKCELGSHRVMSAASCCQVCQSKKKPLSGSVNTGDYPPETVCSSFTYLE--GVCYLKSC 252          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: A0A7W1CQ63_9BACT (Uncharacterized protein n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1CQ63_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 3.430e-11
Identity = 54/197 (27.41%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  787 ISRERLEPASLRKYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKL--IGTSQQHSTKIQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTD---VPAGK--FDMSGSRVTNLEGREVPIVYRY 1356
            + R   E  + + +H    R ++   FL     +Y+RVL+ D   +FFQA+PF     PG++ F +D+   +GT   H   I    G   L +  D+    +G   G    ++DY  QM     +   +  +++  D G+H+YL+Y+G    V   D    PV     VP  K  FD +   + + +G  VP++++Y
Sbjct:   96 LPRASKELLAHKVFHLFYRRHLLYLAFLREYAADYDRVLLTDCRDVFFQADPFGWEQSPGLHLFLEDESNKLGTCGHHIRWIMSAFGPETLQKWKDETVSCAGTVFGDVQAILDYLEQMFS--QTMRVKTLKESDGDQGIHNYLIYAGAFPEVTIHDNRRKPVMTLGLVPPDKLQFDQN-DYLLDEDGAIVPVLHQY 289          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: A0A2P6C0G0_9BACT (Uncharacterized protein n=2 Tax=Salinibacter sp. 10B TaxID=1923971 RepID=A0A2P6C0G0_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 8.680e-10
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = 1
Query:  826 YHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTD--DKLIGTSQQHSTKIQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSE--VLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTDV---PAGKFDMSG-SRVTNLEGREVPIVYRY 1356
            +H  SAR+I    +L  + P Y+ VL+ DV  + FQ NPF    D  ++ F +    L+G    ++  I +  GA  L  LA  P I  GV+LG++S +V+Y R M    V   +G+      G D G+H+YL+    +Q V      +G    V   P         +RV   +G   PI+++Y
Sbjct:  144 WHCQSARFIYFFSYLK-RHPGYDTVLLTDVRDVVFQDNPFSASVDDALHVFEEYGGTLLGNQINNAKWIDNLYGADALEELAAFPIICCGVTLGSTSAMVEYLRLMCHDIVTRYSGW------GTDQGIHNYLVRKERLQNVTVHPFGNGAAMHVGIAPRSAIATDAEARVLTEDGTVCPIIHQY 321          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: A0A8J3GDY8_9BACT (Uncharacterized protein n=1 Tax=Cerasicoccus arenae TaxID=424488 RepID=A0A8J3GDY8_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 5.220e-9
Identity = 47/187 (25.13%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  835 SSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTD--DKLIGTSQQHSTKIQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTDV---PAGKF--DMSGSRVTNLEGREVPIVYRYVENAIL 1374
            +SAR++    ++      +  VL+ DV  +FFQA+PF    +  +  F +  +  IG+   +S   +   G   L R +++    SG ++GT+  ++DY R M++ L++   +     G D   H+ ++ +  V     ++  SGP+  +   P   F  D  G  V N +G  +PI+++Y  + +L
Sbjct:  115 TSARYLYYYLYIAANKDRFSNVLLTDVRDVFFQADPFSYPTNSELNFFLEHPNARIGSCPVNSFWFRGLYGEEDLKRHSERRVSCSGTTIGTTEGILDYLRSMTDELTATNARMTNVDGTDQAAHNGMIVNEKVSNYRIWENGSGPILTLGYEPVDNFLPDEEGL-VRNFDGSIIPIIHQYDRHQVL 300          
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Match: A0A0A2VBV4_9BACI (Uncharacterized protein n=1 Tax=Pontibacillus chungwhensis BH030062 TaxID=1385513 RepID=A0A0A2VBV4_9BACI)

HSP 1 Score: 67.0 bits (162), Expect = 1.310e-8
Identity = 62/222 (27.93%), Postives = 96/222 (43.24%), Query Frame = 1
Query:  619 DLCLGMAVGISPAQLVTFAASFREFAPSADLFMFFEAPTSERFNDIIDTFMITPLEISRERLEPASLRK-YHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKLIGTSQQHSTK-IQDCLGASVLARLADKPAIHSGVSLGTSSLVVDYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPVTDV 1278
            +L +G+    S   +  F  S  +   S ++ MFFE    E  N    T     + IS    E   L K +     R  +   FL   G  Y +VL+ DV  +FFQ NPFD     G  T   ++L    +  +TK I    G  +  +L ++  I +G + G + L++ Y  +M   L    +    +   D  +H+YL++SG VQ V   D   GP+  V
Sbjct:    8 NLIMGLISHYSWEDIKPFFLSLEKVNYSGEVVMFFEHINEETQN----TLKNLNVNISLIPYERIGLEKTFDIIDYRHYLYLNFLRAHGHRYNKVLLTDVRDVFFQLNPFDAGWSDGSITVAKEELKIKDEYWNTKWILTKFGNHIYQQLENETIICAGTTYGPTELILAYLEEMVYHLFQLHY--FPQIINDQAVHNYLIHSGKVQPVAYSDNEKGPIMTV 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6587.17422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LAW0_ECTSI8.040e-17493.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RBK6_9STRA4.900e-5933.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
L1IE52_GUITC8.520e-3535.38Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S4P7D4_GUITH2.370e-3327.27Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
L1IEM2_GUITC3.470e-3326.61Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S3HHB0_9STRA1.720e-1427.94Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7W1CQ63_9BACT3.430e-1127.41Uncharacterized protein n=1 Tax=Chthoniobacterales... [more]
A0A2P6C0G0_9BACT8.680e-1030.81Uncharacterized protein n=2 Tax=Salinibacter sp. 1... [more]
A0A8J3GDY8_9BACT5.220e-925.13Uncharacterized protein n=1 Tax=Cerasicoccus arena... [more]
A0A0A2VBV4_9BACI1.310e-827.93Uncharacterized protein n=1 Tax=Pontibacillus chun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6587contigEcto-sp13_S_contig6587:548..5812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score505.0
Seed ortholog evalue4.3e-140
Seed eggNOG ortholog2880.D8LAW0
Model size1770
Hectar predicted targeting categorysignal anchor
Exons7
EggNOG OGs2DVCF@1,2S6N3@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006230.1
Cds size1575
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6587.17422.1prot_Ecto-sp13_S_contig6587.17422.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6587 548..5617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.3023546-CDS-Ecto-sp13_S_contig6587:547..7311681463907.3023546-CDS-Ecto-sp13_S_contig6587:547..731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6587 548..731 -
1681463907.3156803-CDS-Ecto-sp13_S_contig6587:1051..12431681463907.3156803-CDS-Ecto-sp13_S_contig6587:1051..1243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6587 1052..1243 -
1681463907.3304243-CDS-Ecto-sp13_S_contig6587:1850..19631681463907.3304243-CDS-Ecto-sp13_S_contig6587:1850..1963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6587 1851..1963 -
1681463907.343324-CDS-Ecto-sp13_S_contig6587:2904..32211681463907.343324-CDS-Ecto-sp13_S_contig6587:2904..3221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6587 2905..3221 -
1681463907.354105-CDS-Ecto-sp13_S_contig6587:3762..39621681463907.354105-CDS-Ecto-sp13_S_contig6587:3762..3962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6587 3763..3962 -
1681463907.3683202-CDS-Ecto-sp13_S_contig6587:4352..46931681463907.3683202-CDS-Ecto-sp13_S_contig6587:4352..4693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6587 4353..4693 -
1681463907.378568-CDS-Ecto-sp13_S_contig6587:5389..56171681463907.378568-CDS-Ecto-sp13_S_contig6587:5389..5617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6587 5390..5617 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.3886242-UTR-Ecto-sp13_S_contig6587:5617..58121681463907.3886242-UTR-Ecto-sp13_S_contig6587:5617..5812Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6587 5618..5812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6587.17422.1

>prot_Ecto-sp13_S_contig6587.17422.1 ID=prot_Ecto-sp13_S_contig6587.17422.1|Name=mRNA_Ecto-sp13_S_contig6587.17422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=525bp
MAVLKAHRVHKTHNLLGRAGSGLGRRRGSGLDQYSRSDSLKHGEYNRACR
VIVMLVLLMAIISAPNLFLGPNALFSVNISAREEHENGARSGIRGLSAYP
PIGSPPVASSHGPRPVQGPRPAERLGVANTNGGVDGAPGAGDLCLGMAVG
ISPAQLVTFAASFREFAPSADLFMFFEAPTSERFNDIIDTFMITPLEISR
ERLEPASLRKYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPF
DIIGDPGVYTFTDDKLIGTSQQHSTKIQDCLGASVLARLADKPAIHSGVS
LGTSSLVVDYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLR
FDQSSGPVTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRR
FIYWNQEDSIVNPAGKERTVDDKAADRGKGVPAVVPAIVENCEQFALSEG
VDLFKAKCDLTNARVGSLGDCCAACGGRAGCQAFSFDESFGLCYMKNCDR
PNTPGPSATAQSITSGIRLRQTAQ*
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mRNA from alignment at Ecto-sp13_S_contig6587:548..5812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6587.17422.1 ID=mRNA_Ecto-sp13_S_contig6587.17422.1|Name=mRNA_Ecto-sp13_S_contig6587.17422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6587:548..5812- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAATCATTTGAAGCTGGGGTAACATTTTTGTAACTGACAAAATTAAA TCTGGATTCGAGTTCCTGCCGCGTTCCAAATCTTTAGCCAGCCGTCTTGT AGAATGAGCATACTACGACACACCTGGATCTGTCAATAGATGGCAGGAAG TCGCAACGTGGCGCGGACACTTGTGGCTGATCATCATTTAGTCACATGGC GGTGCTCAAAGCACACAGGGTGCATAAAACGCACAATTTGTTAGGCAGGG CAGGCTCCGGGCTCGGCAGGCGAAGGGGCAGCGGGCTTGATCAATACAGC AGAAGCGACAGTTTGAAGCATGGCGAATACAATCGAGCGTGCAGGGTGAT TGTCATGCTCGTCTTGTTGATGGCGATCATCTCCGCTCCGAACCTATTTC TCGGTCCGAATGCTCTATTTTCGGTGAGAGCCCCTCCAATGCCTGCACGT GTTGTCGTTATCTCGCTTAGTGTACAGTACATTCAATGGATATCATGTGA AGTTTTCTGTAGTCTACGTCCCACACTACAGGGTGTTGTTTGTATGGATC AAATGTCGTAGCTGTCTCGTTGATTTGAATATGCTTTGCAGCTAGACTGC GGTCTAAGTGCATCTTCATATATGTATATTGGCAGGTGTAGTTATGATCT CTGTTGGTTTGGCGTCCGCAAATTTGTAGGTCACCCCATATCTTGCTGCG TGGTTCTACGAGTATTTAGTTGGTTGGGGTCGGCGGTGTTGAGACAGGGC CATAGTGTATTGTCGAAGATCAACTTGGGGTGGCCTTCTTGTATGCCCCT TTGAAGTACGTCGTCGTCATACAAATTGCTACAATAGGACGACGACACGA TTTTCACCACGTCGCGGAATGAATGCCGTCCGTGATGTCAATCTACTGCG TGTTTCTTACGATACTAAGCACCCGGTCGCTGCGTGCTTCATGTTGCACG CGTCGTATGGTACGATTGCCAGCATTCTTACATGGCTGAAGAGCTATAGC TTGTCCCCCATTTGACGATTGCAGGGAACGGCCACTTATATAGATTGTAG GGCATCACGGACGGTTCCAGTGTGTGCTTTACCTAATACCAGTTCTGTGT ACTCAAACTCTTCTTGAAGGTCAATATCTCCGCCCGTGAGGAGCATGAGA ACGGCGCCCGGTCCGGCATTCGTGGCCTTAGCGCATATCCTCCTATTGGA AGCCCGCCCGTAGCATCATCACACGGACCTCGGCCAGTACAAGGACCTCG GCCAGCAGAAAGGCTTGGCGTTGCCAACACAAATGGTGGAGTTGACGGGG CGCCGGGGGCGGGCGACTTGTGCCTGGGTATGGCCGTGGGCATAAGCCCC GCACAACTCGTTACGTTTGCGGCATCCTTCCGCGAGTTTGCGCCGTCGGC CGACCTATTTATGTTCTTTGAGGCACCCACGAGCGAACGGTTTAACGACA TTATCGACACGTGAGTACGCCAAGAGAGAAGCACATGGGGAGCGTCTCTG ACGCCACGAAAATCGCACTTTACGTTCCGTGCGTGTGTGCAGGAGTGGGT AGTCTACTGTACGTTTCCGGAGCTTAACTACGTTTGGTATTAATACCATG GTACCCACGGATCACAAGCGGTGGAGCGGATTTCGTATCGCCTTGCCCTA CCCCTCCCAAGAATTGGCACATAGCGCAGCGTCAAGATTCATGCTGATCC TTAAATCATCACCATTACGGTCGACGTGCGGTCTGAGGCACTGTATGCAT ACGACTTGCTATCAAGGCCCTTGTGGCCTAAGGCCGCAACACAAAACTCC AATCGGTTTTTGGGCGCCGCATATTTTTTCACGGCGCGGGGTTCGGCCAG GTTTATGATAACCCCGCTCGAGATCTCCAGAGAGCGACTGGAACCAGCGT CCCTTCGCAAGTACCACCCTTCCTCCGCCCGATGGATCATGATTCAACGG TTCTTGGACGTCAAGGGCCCCGAATACGAGCGCGTGTTGATGGTCGACGT GGGCCAGATATTTTTCCAGGCCAATCCTTTCGACATTATCGGGGACCCTG GTGAGAACGTACACCGAGGTCTTGGTGCATTGCCCATGCGTTCCCCAACT CTGCACACTGAAAAACCCAAACTGTGTTTGTGTCATGTCATCCTGTTTCC GCTGATCGAACAGTTGATGAGTTGAGAGGATGATATCGATGCCTTTGCCG TAGGAGACTGCGCGTGCGGGGGGGGGGGTACGTGTACCGACCGACGACTC GTAAGCAAATCACGTAAGGTGCTCTTCAAGCCCCACCAAGGCCAAATACG AAAGACAATGGACAAAGACCACCATACTGAAGCAGCTGCAGCAACAGCAC TAGGAGACTCAAGGTGTAAATTCGGCGTCGTCGACAAAGCGTCTCGTTTA ATTTAAATGCACTCTACGGAGCAGCCCGGGACGACCAATGAGGTATAAAT ACCTGCAAGCTCTCCCTGTGCACGAAAGGGGTTGGCTTCGTCGCCCACAT TCGACTTCAACACGTCCAAAAGCAAGAGGACCAGCTGTCAACAATGACCT ATGTTGCCACGCCGTGCACATCAACTACTACCACTGCTCAGGAGTGTATA CCTTCACGGACGACAAGCTTATCGGCACGAGCCAGCAGCACTCCACCAAA ATACAAGACTGTCTCGGGGCCTCGGTCCTCGCCAGACTCGCCGACAAGCC CGCCATCCACTCGGGCGTTAGCCTGGGAACGTCCAGCCTCGTCGTCGACT ACGCCCGTCAGATGTCGGAGGTCCTCTCCTCGGCAGGGTTTCAGGCGTGC GAGAAGGCCGGTGTGGACGCCGGCTTGCACGACTATTTGCTGTACAGTGG GGGGGTGCAGGGGGTGCTGAGGTTCGACCAGTCTTCTGGACCCGTGACCG ACGTGCCGGTGAGCTTCTACAGCAGTAAGTAACCGCTAGATCAATGGAGC CTTTCGTGGTACAGGGTCAAATGGTGTGCAGTTGAAGCTCTCCATCGTTG CTTATGCATGTGAGATTTTTCACAGCATACAATAATATGTATCCTTATTG GATTCCACGCTTCCTCAGTTCGCTTCGCCGTATTTCTGTGCCCATGCGTC ATCTGGGAAGTTATATAAACGTCGAACCGTGTGATGCATACGGTCATCTT TGCGATATACAGAAATATCTCCGTCATTTGGGCCATTTCTGGGAGCAAGA GCATATTTATCCGCAGCACGAATGCAAAGCGGTACAAGATAAAAAACAGC TGTTGAATTTATTGTCTGGAACACATCTGTCTGTAATTCGTGGATTTTTC GTCATTTCGTCATTTTCTAGGGAGATGCTGACAGACCCTGCGGGACACAA GAGCTACCTGTAACATTCGTGATTCATGCGCAGGGGAGAATACGAAACCC TGCAGAGAGGCGAAAAAATTTATCCGCCACGCCGAACACAAGAGAAACTA TTTCGCGCCAAACACCCAAAGCTACGTGCATGGCAGGGATCCACAGCGTC CTTGCTATAAAGACGAAGTTCCTCTCAGTCAGCCCCACAAATTCTAGGTG CAGCGTGAAGACTTTGTACCAGTCGTCATGTTGGAAATGTGTAGGTCCAT CGCGCTTCGCCTCCAAATCACCCCGCCATTCGGAAGATTTTTGCGGGGGT ATTGGATCGGAAACGCGTGGAAAGCGGCTACATTTCGCTGCTTCAACGTT TTAGGTTTTGGGAGTGGTTGATGTTGGGTGCTCCCGTTGTGTAGCGCGTT CTGTCTGCTTCAAACTTCCGATAACAAACCACGTGCACGTGTTCTGTTCG CCACCCCAAATTTCCTGTTACTGCTGCTGCTGTCCTCGTCCTGGCGAAGG CCGGGAAGTTCGATATGTCTGGTTCTCGCGTGACAAACCTCGAGGGACGC GAGGTGCCGATAGTGTACCGCTACGTCGAGAACGCCATCTTGACGGCCGA GGTCTTCAGGAGGTGCGGCTTCGTGTTCTCACGTCGTTGGGCGCCTGGCA CCTCTTGGAGTCGATCCTAGAAAGAACCTGTGACACTTGCATCGAATTAC CCGTCCTGTTCACAAGAGTTTCCCAGTTGAGAGCAAATTCGTGTGTGTGG AGAGTACCCGATTTGCAGGATATCCGTCGATTGGCATTTACCAGAATCGG TACACCTACGCACCTGCGTGCCGACGAGAGGTGGCTGCTTGTGCATTTCA ACCTAGAAATAGAAGACAGACGACATGAAACTCGACACTCACTGCCGAGA ACCTTACCCTCTACGGCCTCGTTACACGGTGATAGTCCCATGGTTGACCT CAGAAGGGTGGGAGTCATTCCGCCGATCCCCCGCACAAGAAGAGCTGAAT TTCCGCGTAAAGGTGCCATCTAATGTACCATCAGCGCTTTACCGTGTTTG GAGGAGCACCCGAAGCTCGGTGTCTGTTTCTGTTCCCATTGTAGACGGAA AGAAATAGCTGCAAGACTTGCGGCTTTGTGTAGTAGGCAGCTTTCGGATG CCGCTTAAACGAGATGACGAAGCCATGAAAGATGCGTCATCCTTTACTCC TCAAAATGGTCTTGAAAAGGTTCATCTACTGGAACCAGGAAGATAGTATC GTCAACCCGGCTGGCAAGGAGAGGACTGTCGATGATAAGGCGGCCGACCG AGGGAAAGGAGTACCGGCGGTCGTTCCTGCCATCGTCGAAAACTGCGAGC AGTTCGCGCTTTCGGAGGGGGTCGATCTGTTCAAGGCCAAGTGCGACCTC ACCAACGCGAGGTACACAGTTGAGCTTTAGAAAAGGACGCTTTCGCCATT GCGTAAACATATCTTCAGTCGAGTCGTGAAAGGCTTTCGACAAGGTTATG TTTCCAAGCAATAGATCTAGAGCCCACCCTGTACATTTCTGGCCACGATC GTGCTGTCTCCTCTGAGCGGCGTTAAGTGCCTCGAATAGCTTATCGCTTC AAACAGACCAACCACGTCGTCTCAACACCTTAGGGGCAATATCCGCCCCC GGCTAACGTGTGTGCCCTGCTATAATCTCTCTCTTACCCCCAACGGTCGG TTGGGACGACTCTTCGAAACTCATTCGTCAGGGTTGGTTCTCTCGGTGAC TGCTGCGCCGCGTGTGGCGGAAGGGCTGGCTGCCAAGCGTTTTCTTTCGA CGAAAGCTTTGGGCTGTGCTACATGAAGAACTGCGACAGGCCGAACACGC CCGGACCCTCTGCTACCGCACAGAGTATTACCTCGGGGATAAGATTGAGG CAGACTGCGCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6587:548..5812-

>mRNA_Ecto-sp13_S_contig6587.17422.1 ID=mRNA_Ecto-sp13_S_contig6587.17422.1|Name=mRNA_Ecto-sp13_S_contig6587.17422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6587:548..5812- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTGCTCAAAGCACACAGGGTGCATAAAACGCACAATTTGTTAGG
CAGGGCAGGCTCCGGGCTCGGCAGGCGAAGGGGCAGCGGGCTTGATCAAT
ACAGCAGAAGCGACAGTTTGAAGCATGGCGAATACAATCGAGCGTGCAGG
GTGATTGTCATGCTCGTCTTGTTGATGGCGATCATCTCCGCTCCGAACCT
ATTTCTCGGTCCGAATGCTCTATTTTCGGTCAATATCTCCGCCCGTGAGG
AGCATGAGAACGGCGCCCGGTCCGGCATTCGTGGCCTTAGCGCATATCCT
CCTATTGGAAGCCCGCCCGTAGCATCATCACACGGACCTCGGCCAGTACA
AGGACCTCGGCCAGCAGAAAGGCTTGGCGTTGCCAACACAAATGGTGGAG
TTGACGGGGCGCCGGGGGCGGGCGACTTGTGCCTGGGTATGGCCGTGGGC
ATAAGCCCCGCACAACTCGTTACGTTTGCGGCATCCTTCCGCGAGTTTGC
GCCGTCGGCCGACCTATTTATGTTCTTTGAGGCACCCACGAGCGAACGGT
TTAACGACATTATCGACACGTTTATGATAACCCCGCTCGAGATCTCCAGA
GAGCGACTGGAACCAGCGTCCCTTCGCAAGTACCACCCTTCCTCCGCCCG
ATGGATCATGATTCAACGGTTCTTGGACGTCAAGGGCCCCGAATACGAGC
GCGTGTTGATGGTCGACGTGGGCCAGATATTTTTCCAGGCCAATCCTTTC
GACATTATCGGGGACCCTGGAGTGTATACCTTCACGGACGACAAGCTTAT
CGGCACGAGCCAGCAGCACTCCACCAAAATACAAGACTGTCTCGGGGCCT
CGGTCCTCGCCAGACTCGCCGACAAGCCCGCCATCCACTCGGGCGTTAGC
CTGGGAACGTCCAGCCTCGTCGTCGACTACGCCCGTCAGATGTCGGAGGT
CCTCTCCTCGGCAGGGTTTCAGGCGTGCGAGAAGGCCGGTGTGGACGCCG
GCTTGCACGACTATTTGCTGTACAGTGGGGGGGTGCAGGGGGTGCTGAGG
TTCGACCAGTCTTCTGGACCCGTGACCGACGTGCCGGCCGGGAAGTTCGA
TATGTCTGGTTCTCGCGTGACAAACCTCGAGGGACGCGAGGTGCCGATAG
TGTACCGCTACGTCGAGAACGCCATCTTGACGGCCGAGGTCTTCAGGAGG
TTCATCTACTGGAACCAGGAAGATAGTATCGTCAACCCGGCTGGCAAGGA
GAGGACTGTCGATGATAAGGCGGCCGACCGAGGGAAAGGAGTACCGGCGG
TCGTTCCTGCCATCGTCGAAAACTGCGAGCAGTTCGCGCTTTCGGAGGGG
GTCGATCTGTTCAAGGCCAAGTGCGACCTCACCAACGCGAGGGTTGGTTC
TCTCGGTGACTGCTGCGCCGCGTGTGGCGGAAGGGCTGGCTGCCAAGCGT
TTTCTTTCGACGAAAGCTTTGGGCTGTGCTACATGAAGAACTGCGACAGG
CCGAACACGCCCGGACCCTCTGCTACCGCACAGAGTATTACCTCGGGGAT
AAGATTGAGGCAGACTGCGCAGTGA
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