mRNA_Ecto-sp13_S_contig1204.1742.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1204.1742.1
Unique NamemRNA_Ecto-sp13_S_contig1204.1742.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1204.1742.1 vs. uniprot
Match: A0A6H5KGI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI2_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 9.850e-108
Identity = 201/261 (77.01%), Postives = 211/261 (80.84%), Query Frame = 3 
Query:    3 AAAQSLEDSLPNSKKGTTEAATRDGDIGNLVVDSTACDASVPTATVQEESNRSSDGGNGDTYEGGTRLQA-NERGRQGGSGGGGVDGQEFEDDEERGQALNASEKRLEMLPMSAVEHLGSADRLEIIRKTVPRERRMAVLQRLFHLAQAPAEEVERLVTCVKELKNNSSPAEIRDVNLLKTWQGVREERATAWEEATEQVRLAAAAAAATGAQEYLPAAKSGDDVAATGNAEDITDTETKQTDFKPGVREGSADERCSTIG 782
            AAAQSLEDSL +SK GTTEAAT +GDIGNL+ + T  DASVPTA+V+EESNRSS GGNGDT EGG RLQA  E GRQGG+                    NASEKRLEMLPM AV HLG ADRL IIRKTVPRERRMAVLQRLFHLAQAPAEEVERLVT VK LK+NSSPAEIRDVNLLKTWQGVREERATAWEEATEQVRLAAAA AA GAQE +PAAK GDDVAATGN E +TD E KQ D KPGVREGS DERCSTIG
Sbjct:   55 AAAQSLEDSLTDSKTGTTEAATPNGDIGNLLNNITG-DASVPTASVREESNRSSGGGNGDTQEGGARLQAIEEGGRQGGNXXXXXXXXXXXXXXXXXXXSNASEKRLEMLPMGAVGHLGRADRLGIIRKTVPRERRMAVLQRLFHLAQAPAEEVERLVTHVKGLKSNSSPAEIRDVNLLKTWQGVREERATAWEEATEQVRLAAAATAAIGAQESVPAAKDGDDVAATGNDEHVTDAEKKQMDSKPGVREGSVDERCSTIG 314
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BLAST of mRNA_Ecto-sp13_S_contig1204.1742.1 vs. uniprot
Match: D7FJ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ44_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 3.070e-106
Identity = 200/261 (76.63%), Postives = 207/261 (79.31%), Query Frame = 3 
Query:    3 AAAQSLEDSLPNSKKGTTEAATRDGDIGNLVVDSTACDASVPTATVQEESNRSSDGGNGDTYEGGTRLQAN-ERGRQGGSGGGGVDGQEFEDDEERGQALNASEKRLEMLPMSAVEHLGSADRLEIIRKTVPRERRMAVLQRLFHLAQAPAEEVERLVTCVKELKNNSSPAEIRDVNLLKTWQGVREERATAWEEATEQVRLAAAAAAATGAQEYLPAAKSGDDVAATGNAEDITDTETKQTDFKPGVREGSADERCSTIG 782
            AAAQSLEDSL +SK GTTEAAT DGDIGNLV +S    ASVPTATV+EESNRSS GGNGDT EGG RLQAN E GRQ                   G+  NASEKRLEM       HLG ADRL IIRKTVPRERRMAVLQRLFHLAQAPA+EVERLVTCVKELKNNSSPAEIRDVNLLKTWQGVREERA AWEEATEQVRLAAAAAAA GAQE LPAAK GDDV AT NAED+TDTET QTD   GVREGS DERCST+G
Sbjct:  117 AAAQSLEDSLTDSKTGTTEAATPDGDIGNLV-NSITGGASVPTATVREESNRSSGGGNGDTQEGGARLQANDEGGRQXXXXXXXXXXXXXXXXXXXGEVSNASEKRLEMXXXXXXXHLGRADRLGIIRKTVPRERRMAVLQRLFHLAQAPADEVERLVTCVKELKNNSSPAEIRDVNLLKTWQGVREERAPAWEEATEQVRLAAAAAAAIGAQESLPAAKDGDDVTATRNAEDVTDTETMQTDSTQGVREGSVDERCSTVG 376
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BLAST of mRNA_Ecto-sp13_S_contig1204.1742.1 vs. uniprot
Match: A0A835ZN70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN70_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.330e-9
Identity = 48/114 (42.11%), Postives = 60/114 (52.63%), Query Frame = 3 
Query:  237 SGGGGVDGQEFEDDEERGQALNASEKRLEMLPMSAVEHLGSADRLEIIRKTVPRERRMAVLQRLFHLAQAPAEEVERLVTCVKELKNNSSPAEIRDVNLLKTWQGVREERATAW 578
            +GGGG  G     D+  G  L   E  L+ L    V       RL II   VPRERR+A+LQRLF+L QAP EE   +V  V+E  + +    + D NLL TW  +RE RA  W
Sbjct:  104 AGGGGTAG-----DDAGGDVLGGVEGDLQRLKEFDVT---DEQRLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEW 209
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1204.1742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGI2_9PHAE9.850e-10877.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ44_ECTSI3.070e-10676.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZN70_9STRA3.330e-942.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1204contigEcto-sp13_S_contig1204:12844..15874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1503
Hectar predicted targeting categoryother localisation
Exons4
Cds size462
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1204.1742.1prot_Ecto-sp13_S_contig1204.1742.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1204 13562..15551 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462639.5283043-UTR-Ecto-sp13_S_contig1204:12843..135611681462639.5283043-UTR-Ecto-sp13_S_contig1204:12843..13561Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1204 12844..13561 -
1681462639.5728016-UTR-Ecto-sp13_S_contig1204:15551..158741681462639.5728016-UTR-Ecto-sp13_S_contig1204:15551..15874Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1204 15552..15874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462639.5375192-CDS-Ecto-sp13_S_contig1204:13561..137501681462639.5375192-CDS-Ecto-sp13_S_contig1204:13561..13750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1204 13562..13750 -
1681462639.546206-CDS-Ecto-sp13_S_contig1204:14354..144301681462639.546206-CDS-Ecto-sp13_S_contig1204:14354..14430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1204 14355..14430 -
1681462639.5543988-CDS-Ecto-sp13_S_contig1204:14804..148801681462639.5543988-CDS-Ecto-sp13_S_contig1204:14804..14880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1204 14805..14880 -
1681462639.5629334-CDS-Ecto-sp13_S_contig1204:15430..155511681462639.5629334-CDS-Ecto-sp13_S_contig1204:15430..15551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1204 15431..15551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1204.1742.1

>prot_Ecto-sp13_S_contig1204.1742.1 ID=prot_Ecto-sp13_S_contig1204.1742.1|Name=mRNA_Ecto-sp13_S_contig1204.1742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MLPMSAVEHLGSADRLEIIRKTVPRERRMAVLQRLFHLAQAPAEEVERLV
TCVKELKNNSSPAEIRDVNLLKTWQGVREERATAWEEATEQVRLAAAAAA
ATGAQEYLPAAKSGDDVAATGNAEDITDTETKQTDFKPGVREGSADERCS
TIG*
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mRNA from alignment at Ecto-sp13_S_contig1204:12844..15874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1204.1742.1 ID=mRNA_Ecto-sp13_S_contig1204.1742.1|Name=mRNA_Ecto-sp13_S_contig1204.1742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3031bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1204:12844..15874- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCCGCCCAATCCCTCGAGGATAGTCTTCCGAACAGCAAAAAGGGA
ACCACGGAAGCAGCAACTCGGGATGGCGATATCGGAAACCTTGTTGTTGA
CAGCACGGCTTGTGATGCTAGCGTTCCCACCGCTACCGTGCAGGAGGAAT
CAAACAGAAGCAGCGATGGCGGCAACGGAGACACGTACGAGGGAGGGACG
CGACTGCAAGCCAATGAGCGGGGTCGGCAAGGGGGGAGTGGGGGCGGGGG
GGTGGACGGGCAGGAGTTTGAAGACGACGAAGAAAGAGGTCAGGCTTTGA
ATGCCAGCGAGAAACGGCTCGAGATGCTTCCGATGAGTGCTGTTGAGCAC
CTCGGGAGTGCAGACCGGCTGGAAATCATCAGAAAGACGGTACCAAGGGA
GAGGAGAATGGCGGTGTTGCAGCGGCTCTTTCACCTGGCGCAGGGTGAGT
GCGTCAGCAGCATGTTGGAAGTGATGCTGTGCTGCCGAAGTGGTGTGCGG
GCGAGATGTTTTCGTTTGCGGTTGATCTGGTGACACAGCAGTCCATGGGG
CGGGCGTTGGGCGACGTTGGGTGTTCAATGACCTTTGCTGAAGATCGGCA
AGGCAACAACGATCAATAATCAACAATACCAGCATCGACGTTATATGATA
CGTTGTCCATGTTGGAAACGACAGCGGTGAAGTTGCAGGCATGACGATGG
AAGTGCTTGCGGGGCCCGGTGGCGAAAGTCTTAGGGATGTATGCATTACG
TCTCTACTTCTTTGGGGACAACCCACATCAGGTGTACATAGTAACCGATC
AGCTTCGATTAGGGTGAGGCATGGTTCATCATGGTAGATACGCTTCACAG
GACCGGGGCTGGTTTGCTGGAATTTCGCTTGGTGCGAATTGCGAAAGTGT
TGCATGACGAAAGGAGTGCCTGTTTACTGGCTGCTTCACCAGCCTCGTGC
ATGATGTGTTCCTTCCGCGTTTTTCTTCTTGTACTTGTACGTAGCCCCTG
CCGAAGAGGTGGAACGGCTTGTCACCTGCGTCAAGGAGCTCAAGAACAAC
TCTTCGCCGGCAGAGATCAGGTTCGGTGTAGTGTGGCGCGTCTGTAATCA
TGCCATGTGTAGTGCCGCACCTAGCTGAATGTGGCAGGCCATTGATAGGA
TTGCGTGTGTGAGGTGTGCTTGTTGCGATATGTTCTCGTTGCTTAGAAAT
AGTTTCCGGCATCGTCTGGAGACTATCTTTGTGTCACCTGCATGCCGAAC
CATGGCGTCATAGACCACCTGATGCTGAAAACCTTTTGTTGATAGGACTG
CAGACCCCATGGAGCCGTGAGAAAGACACACATACTGCTACGTACGTAGC
GATAGCGCACTCTGTCATTATTGCCAAATAACTAAGCTGAAGAGCGTTGT
GGCATGTGCTGCTGTTGTCTTGGCCCTGTGCGCGGTGCCCGAAGGGACGT
TAACCTACTCAAGACATGGCAGGGCGTACGGGAAGAGCGAGCCACGGCGT
GGGAAGAGGCCACCGAGCAGGTACGCGTTTGTGGTCGTGGTTTTTTTTTT
TTCCGCCTCCACACAAGACACGAACTTGCTCATGGCGCCCAACGTTCAAG
GTAGCGCAATGATTCTAACCAAAATCTGACCAACTTTTGTTGGGAAAGCG
TTGTGGCATCGTCGGCCACATGGGCAGCCATGTGTGGTACACTCACTCGG
CATGGAAACAATTAACAATGGGCATATGCACTACTTTTTGGGTGACTTGG
ATGTATTCGCCCACAGCGTCACGCTTACTGATGGTGACCAGTTGGTAATT
GCGTGCCTTTAGTTTAACTTTGTTTCGTGGGTCTTATCCCGTGGATCTCC
GGCGCTCTGAGTATAATCCGTGTGGGGATTGTCCATCTGTTTTGTTGCTT
TTGCCAGCAAAGAAGCACGGAGTTGAATTACAGGTGTGGCCGTGGCTCAA
AAGCCATTTTCTTTATCGTGTTGGTAAGAATGCCGAAGCGTGTGGCACGA
AACCCTTTTCATGTCCCCTCTCATGGCGAGAGTCTCACCTAGCATGGAAC
CGTCGAGAAGATGTGTCATTCTCTTTCCTGTCTTTGTCGATACCACGCTC
GACCTATTCACGTTATATGAATAGGTACGACTTGCTGCGGCGGCTGCTGC
TGCTACCGGAGCCCAAGAATATCTGCCTGCAGCCAAGAGTGGTGACGACG
TGGCTGCCACAGGAAACGCTGAGGATATCACCGATACAGAGACGAAGCAA
ACGGATTTCAAGCCGGGAGTTCGCGAAGGTTCTGCCGACGAGAGATGTAG
CACTATTGGATAGCTAACGAAGGTTGTTGATGGCGTTTTGGTCAGACCCC
TGGCATCTCGCTCACACGAAGCGTTGTCGCCCAGCATCCAAGCTGCCACC
TTCCCTCTACAAAGCACTGCGGTAGCAGCCTACAGCGAGTTTTTCTCCCA
CCCACCATCCCACGTTTTCCGAGGACAGAAAAGGGGGGGGGGAAGTTCGC
AGTACTCCAGCCAACTGGCAGAGTACAACATGATTAGTAGATTCTTCCGG
AGTAGCCCAGAACAAGCCTGGATATGAAGTTGCGGCCGTTCATCGCGATT
CCTCCCTCCCGAGAACTATTAGGACTGGGTGAACGTAGACGAAAGTAGGT
AGGGTACGGAGACAAACCACACCAAAACACTCGTGGAAGAGAGGTGTCGA
TTCTAAGTCTTCGGGGTCCGGGCAAAGCGAGGCTGAAGGTGTTCAACTTC
CGTTTTTTCCGTTAGCGAGTTGACCGAGAGCGTGTGCTCGATGGTATTTC
CGTCGGCGGACAATTAGAGCAAGAACAGCTGATGGTACAATTGTGAAAAG
CCCAGCAGTCCCCACATGCATGGGTTGTGTGCTGCCTCCGCCTTACGCGT
TGTTACAATGTCTCGGCACGACAGCTTAAACCATGTGAAGAAAGTCTGAG
AGCCTCGACAACAGCTGAATGTTCTGCAAAGAGCATTCCGGAGCAGGCCG
TTGCTTTATTTTGAAGTGCCTCCGTCGCACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1204:12844..15874-

>mRNA_Ecto-sp13_S_contig1204.1742.1 ID=mRNA_Ecto-sp13_S_contig1204.1742.1|Name=mRNA_Ecto-sp13_S_contig1204.1742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1204:12844..15874- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCCGATGAGTGCTGTTGAGCACCTCGGGAGTGCAGACCGGCTGGA
AATCATCAGAAAGACGGTACCAAGGGAGAGGAGAATGGCGGTGTTGCAGC
GGCTCTTTCACCTGGCGCAGGCCCCTGCCGAAGAGGTGGAACGGCTTGTC
ACCTGCGTCAAGGAGCTCAAGAACAACTCTTCGCCGGCAGAGATCAGGGA
CGTTAACCTACTCAAGACATGGCAGGGCGTACGGGAAGAGCGAGCCACGG
CGTGGGAAGAGGCCACCGAGCAGGTACGACTTGCTGCGGCGGCTGCTGCT
GCTACCGGAGCCCAAGAATATCTGCCTGCAGCCAAGAGTGGTGACGACGT
GGCTGCCACAGGAAACGCTGAGGATATCACCGATACAGAGACGAAGCAAA
CGGATTTCAAGCCGGGAGTTCGCGAAGGTTCTGCCGACGAGAGATGTAGC
ACTATTGGATAG
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