mRNA_Ecto-sp13_S_contig6581.17414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6581.17414.1
Unique NamemRNA_Ecto-sp13_S_contig6581.17414.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: D7FXG0_ECTSI (ATP-synt_DE_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG0_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 1.350e-85
Identity = 146/169 (86.39%), Postives = 152/169 (89.94%), Query Frame = 1
Query:    1 MLGVAARRVAGAARPALRTARCFSTAEAPAVMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSSTVRA---AGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVLAS 498
            MLGVAARRVAGAARPALRTARCFSTAEAPAVMKLNFCLPHETIYKDKDVDQV  P S G+ G+TAG  P  +++    V+    AGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVLAS
Sbjct:    1 MLGVAARRVAGAARPALRTARCFSTAEAPAVMKLNFCLPHETIYKDKDVDQVIIPGSAGEYGVTAGHSPIVAELKPGVVQVVHEAGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVLAS 169          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A836CK87_9STRA (ATP-synt_DE_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK87_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.760e-31
Identity = 81/171 (47.37%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    1 MLGVAARRVAGAARPALRTARCFSTAEA--PAVMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSSTVRA---AGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVLAS 498
            M+G A RR A A R +LR     STAEA  P  + LNFCLPH+ IY DK VD V  P   G  G+T G     S++    V+    AG EPEN+FVSAGFALTHP SVTDITA+EAV+V+++D  AVK +++ AK ++ AA++  +E   AQ+ + T + M  A+G+ L++
Sbjct:    1 MIGHALRRSAPALRASLRH---MSTAEAAKPTGLTLNFCLPHKPIYVDKAVDTVIIPGVAGVYGVTQGHSAVISEMQPGLVKIYHEAGGEPENWFVSAGFALTHPNSVTDITAVEAVKVDDMDPEAVKDTFNQAKSDLAAASD-EKERVAAQIQMSTAQVMGQALGLNLSA 167          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A1Z5JNE2_FISSO (F-type H+-transporting ATPase subunit delta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNE2_FISSO)

HSP 1 Score: 118 bits (295), Expect = 1.030e-30
Identity = 70/148 (47.30%), Postives = 91/148 (61.49%), Query Frame = 1
Query:   61 RCFSTAEAPAVMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSSTVRAAGQE----PENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVL 492
            RC ST EA   +KLNFCLP ET+YK   V  V  P   G+ GITA  +P  S++    V+   +E    PE +FV+ G+ALTHP S TD+   EAV++++ID   V   YDAA+ +  +AT GS E AEAQ+ +E TK M  AIGV L
Sbjct:   16 RCMST-EAATAVKLNFCLPQETLYKGASVHSVILPGMGGEYGITANHVPYVSQLKPGVVKILHEEGSADPEKYFVAGGYALTHPDSTTDVICPEAVKLDDIDPSEVAKKYDAARTKFSSATAGSIEQAEAQIEMEITKEMGMAIGVSL 162          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A7S1DDA2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDA2_CYCTE)

HSP 1 Score: 111 bits (278), Expect = 7.720e-28
Identity = 66/150 (44.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   58 ARCFSTAEAPAVMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSSTVRAAGQ----EPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVLA 495
            AR  S+  +   +KLNF LPHETIY   +V QV  P S G+ G+ A  +P  S++ +  ++   +    EPE +FVS GFALTH TS+T+I+  EAV++++ID  AV  S+D AK    +A  GS   AEAQ+A+E +K+M  A+G++LA
Sbjct:   41 ARWMSSEASSGKIKLNFSLPHETIYSGVEVAQVIIPGSEGEYGVAANHVPYISQLKAGVLQIIHEDGAGEPEKYFVSGGFALTHETSLTEISCPEAVKLDDIDSAAVSKSFDEAKAAYASAEAGSIAQAEAQIAMEVSKSMGMAVGLMLA 190          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A7S1UY04_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UY04_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.560e-26
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   55 TARCFST-AEAPAV--MKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSSTVRA--AGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIG 483
            TAR FS+ A APA   M LNF LP ET+Y   +VDQV  P   G+ GITA  +P  S++ +  ++      EPE +FVS GFALTH  S TDI+   AV+++++D  AV S+YDAAK    +A  GS   AEAQ+ ++  K+M +A+G
Sbjct:   14 TARAFSSEAAAPASGKMTLNFSLPDETVYAGAEVDQVIVPGEAGEYGITANHVPIVSELKAGVLQILHGDGEPEKYFVSGGFALTHDDSSTDISCPVAVKLDDLDSSAVSSNYDAAKSAFASAEAGSIAQAEAQIEMDVNKSMGSALG 161          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A7R9U2Q0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2Q0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.760e-20
Identity = 57/141 (40.43%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   79 EAPAVMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSSTVRA---AGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVL 492
            EA   +KLN   P ETIY  K VD V  P + G+ G+TAG  P  +++ +  V+       + E FFVS GFAL+H    TDI+A E  R+E++DE A+++ +  A  ++ +A + + +A EAQ+ +ET KAM AA+G+ L
Sbjct:   55 EAAEGLKLNLASPSETIYSKKVVDSVIVPGADGEYGVTAGHSPIVAELKAGVVQVLHKGSADAEKFFVSGGFALSHEDDTTDISAPEIARLEDLDENAIRTGFADATTKLSSAGDETAKA-EAQIEMETFKAMGAALGIAL 194          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A0G4IRP4_PLABS (ATP-synt_DE_N domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IRP4_PLABS)

HSP 1 Score: 89.7 bits (221), Expect = 1.550e-19
Identity = 52/143 (36.36%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   70 STAEAPAVMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSSTVRAA---GQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVV 489
            S    P+ ++LN  +PH+ + K+++V QV+ P  +G+ G+ AG +P  +++    V      G++P  +FVS GFA  H  S TDI+A+EAV ++E+D  AVK++   A+  + A  +  +E A AQ+A++    MA A+GVV
Sbjct:   27 SAGGVPSKLRLNMVVPHQILVKNEEVRQVTIPSPNGEFGVLAGHVPVVTELQPGVVTIEFGDGKDPVKYFVSGGFAFVHGNSTTDISAVEAVPLDELDPEAVKANLKEAEGSL-AGAKDDKEKAVAQIAIDVNNKMALALGVV 168          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A7S3BYI9_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BYI9_9VIRI)

HSP 1 Score: 89.0 bits (219), Expect = 4.900e-19
Identity = 54/133 (40.60%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   85 PAVMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSS--TVRAAGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAA 477
            PA + LNF LPH   +   +VD V+ P   G +G+  G +P+ +++     TV     + + +FVS+G+ + HPTSVTD+TA+EAV +E+ID  A K   + AK  + +A++   +A EAQV VE   AMAAA
Sbjct:   57 PAKLTLNFYLPHGVEFDAAEVDSVTVPAESGDMGVLPGHMPSVARLRPGVLTVNTTDSDVKKYFVSSGYVMVHPTSVTDVTAMEAVPLEQIDADAAKKGLEDAKAALASASDDLAKA-EAQVGVEVFTAMAAA 188          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A0H5R4T8_9EUKA (ATP-synt_DE_N domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R4T8_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 5.280e-19
Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   73 TAEAPAVMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSSTVRA---AGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAI 480
            T  A   ++LNF +PH+ I K+++V QV+ P + G+ G+ AG +P  +++    V      G +P  +FVS GFA  H  S TDI+A+EA+ ++E D  A++ +  AA+ ++ AAT+  +E A AQ+ ++  K + A +
Sbjct:   25 TKSATPKLRLNFNVPHQAIVKNEEVHQVTIPGTEGEFGVLAGHVPIVAELQPGVVTVDYGKGDKPSKYFVSGGFAFVHQNSTTDISAVEAIPLDEFDPSAIQDNLQAAQAQLAAATDP-KEKAIAQIMIDVNKKLQACV 162          
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Match: A0A6U2ATR5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2ATR5_HEMAN)

HSP 1 Score: 86.7 bits (213), Expect = 2.960e-18
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    1 MLGVAARRVAGAARPA---LRTARCFSTAEAPA-----VMKLNFCLPHETIYKDKDVDQVSAPRSHGKIGITAGMIPNGSKISSST--VRAAGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAI 480
            ML  AA R   +ARPA   L  AR  +   APA      + LN   PHE I+  ++VD V  P + G  G+  G +P  S++      V  A  + + FF+S+GFA  H  S  DI A+EAV+++++D+ AV+S    A++E+ + T+   E A+AQ+AV+T  AMA A+
Sbjct:    8 MLARAAARTLRSARPAATRLSGARWMAEDAAPAGGIPSKLTLNLLAPHEAIFHKQEVDMVIIPGAAGMFGVLPGHVPTISELKPGLLEVTVAPGDTQKFFISSGFAFAHANSTLDICAVEAVKLDDLDQSAVESGKAQAEKELASQTD-EVEKAKAQIAVDTYTAMAEAL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6581.17414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG0_ECTSI1.350e-8586.39ATP-synt_DE_N domain-containing protein n=1 Tax=Ec... [more]
A0A836CK87_9STRA5.760e-3147.37ATP-synt_DE_N domain-containing protein n=1 Tax=Tr... [more]
A0A1Z5JNE2_FISSO1.030e-3047.30F-type H+-transporting ATPase subunit delta n=2 Ta... [more]
A0A7S1DDA2_CYCTE7.720e-2844.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1UY04_9STRA3.560e-2645.95Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9U2Q0_9STRA1.760e-2040.43Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4IRP4_PLABS1.550e-1936.36ATP-synt_DE_N domain-containing protein n=1 Tax=Pl... [more]
A0A7S3BYI9_9VIRI4.900e-1940.60Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A0H5R4T8_9EUKA5.280e-1935.25ATP-synt_DE_N domain-containing protein n=1 Tax=Sp... [more]
A0A6U2ATR5_HEMAN2.960e-1837.65Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6581contigEcto-sp13_S_contig6581:4852..8017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score260.8
Seed ortholog evalue4.5e-67
Seed eggNOG ortholog2880.D7FXG0
Preferred nameATP5D
Model size501
KEGG koko:K02112,ko:K02114,ko:K02134,ko:K14573
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko03008,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map03008,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
Hectar predicted targeting categorymitochondrion
GOsGO:0000275,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005756,GO:0005759,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033178,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042221,GO:0042407,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0044877,GO:0045259,GO:0045261,GO:0045269,GO:0046034,GO:0046390,GO:0046483,GO:0046688,GO:0046907,GO:0046933,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0055086,GO:0061024,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
Exons5
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0355@1,KOG1758@2759
Ec32 ortholog descriptionATPase, F1 complex, delta/epsilon subunit
Ec32 orthologEc-07_003070.1
EC3.6.3.14
Cds size501
COG Functional cat.C
BiGG ReactioniMM904.YDL004W,iND750.YDL004W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.771765-CDS-Ecto-sp13_S_contig6581:4851..49891681463906.771765-CDS-Ecto-sp13_S_contig6581:4851..4989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6581 4852..4989 -
1681463906.7852204-CDS-Ecto-sp13_S_contig6581:5678..57951681463906.7852204-CDS-Ecto-sp13_S_contig6581:5678..5795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6581 5679..5795 -
1681463906.7949927-CDS-Ecto-sp13_S_contig6581:6877..69511681463906.7949927-CDS-Ecto-sp13_S_contig6581:6877..6951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6581 6878..6951 -
1681463906.8073983-CDS-Ecto-sp13_S_contig6581:7153..72631681463906.8073983-CDS-Ecto-sp13_S_contig6581:7153..7263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6581 7154..7263 -
1681463906.8242931-CDS-Ecto-sp13_S_contig6581:7955..80171681463906.8242931-CDS-Ecto-sp13_S_contig6581:7955..8017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6581 7956..8017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6581.17414.1prot_Ecto-sp13_S_contig6581.17414.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6581 4852..8017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6581.17414.1

>prot_Ecto-sp13_S_contig6581.17414.1 ID=prot_Ecto-sp13_S_contig6581.17414.1|Name=mRNA_Ecto-sp13_S_contig6581.17414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
MLGVAARRVAGAARPALRTARCFSTAEAPAVMKLNFCLPHETIYKDKDVD
QVSAPRSHGKIGITAGMIPNGSKISSSTVRAAGQEPENFFVSAGFALTHP
TSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAV
ETTKAMAAAIGVVLAS*
back to top

mRNA from alignment at Ecto-sp13_S_contig6581:4852..8017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6581.17414.1 ID=mRNA_Ecto-sp13_S_contig6581.17414.1|Name=mRNA_Ecto-sp13_S_contig6581.17414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3166bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6581:4852..8017- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGGAGTTGCTGCCAGGCGCGTGGCGGGAGCGGCTAGGCCGGCGCT CCGAACAGCGAGGTATACAAAGTCGCCGCCCCCCCTTCCCGGACAGTTGG AAGAGTTGTGTGTGTTCCGCAAAGCGCACAGCCTGTGCGGCCTCACTTTG GATAAGCAGGAACGAACGAGATAGGTTGGTGGTACCAATGAGTTGGGATG CTTTTGCAGAGTTAATGCGTTTGCTCGACACCGTTCCAAGCATGTGAGAC TTGGTGTGCTCGCTCGCTCGAGGTGGTGTTCTGCTGGCTTTGCTGGCGTG TGCGGCGTATGTAGAGTCTGCAACAGAAATAAGTACCAGGAGGCTGTGTC TCCTCTGTGCTAAGTGCATTCGCGTGGGGCGCCCTGCTTTGATTCGTCGT TACGGCGCACCTCTGTCGAGATGCATTGGACTTTCCATCGTACACGACAT GGCGATGCACAGCAGGCGTACTGTATGCTGTAACTGCTGTACGAATCTAA TGCAACTACTTCGAGAGATGGTGTACCTTATCGTCCACCTCTGTGCAGGA AGGTGTATCGGGGCCAAACCCCTCTTACTGATTGGCCTATTGTGCAACAC CATGCCATGTGGCTCCTTTTTGTATTCGCATACCCCGAACACTTTGCTGC CGATATTAGAAGATCGCAACAAGCATTGTGCCTTGTAGCGCGTTGGTGAT CCCGGTCCCTCTTTTGTGCGATGCCTGTGTTTCATCATCCCCATCCACAA CCAGGTGTTTTTCCACAGCCGAGGCGCCCGCAGTGATGAAGCTCAACTTT TGCCTACCGCACGAGACCATCTACAAGGACAAGGATGTCGACCAGGTGAG TGCACCGCGCAGTCGTCACGCATGCCGCACTCGTCCCAACGGACGCTACA CTGCTGGTGGTTCCAAATTGTCCTCTACCTGGGGGCATGGGGCATGTATG CCTGTACTGTAGTAGTCAACAAGGAGGTGTTTGGGGCGAGAGACGGGTTG CTGCTCGTGCCGGGACAACTCTCAACGATTCCCATAACGAACAGACTCGA CGGCTAGATTTGCAAGATGGAAAGATCGGTATAACTGCCGGGATGATCCC GAACGGCAGCAAAATAAGCAGTAGTACCGTCCGTGCTGCCGTATACATGC AACATCCCAGTCCCACGGGAGACAGCGTGCGTGTTCCCCATGCAGAACTG CAGCACACCGCGTCTCCCCCGTTTGCTTGCCGAGCCGGAAAGCATATCTC GGGCGAGAAGGCCGCTTTTCAAGTCCAGTGTTCGCTCTCGGGTAAAACCG GACGCCCTGCACAACGACGGCTAGTACATCATTCCCATACCTGCTGTGTC CGACTATACAGATGGTGACTTTTCGACTTCATTTTGCAGACGACACAGAT GCTTTCTGGTTCGCATTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGTCCTGTGTCTAATGCGCC TGGCGATTACCTTGCGTGTTGGCGCTGTGGTGACGATTGCTGGGCACGCC GAGACGGTAGTGGCGACACCCGTTGCTACCCTTGCACGAGATCGTGGGCC GAGGTTGTCGCTGTCCGGGAGTGCACATCTTGCCTTGTTCAGAGCCTTGT TCAGTGTCTATCTCTGTCTCTCGAGTGAGAATCAGACAGACTGTGTCGCA TTTTGTTTATCCGCGTCTTGGCATGGATCAGTTTTCTCTCCTCTAGGTTG CCCTCGCACCTCAATATGGATATTTTCGAACCATCGAGCCCTTGTTTGCT ATGAGGGAGCATTTGTTCGTCGTCGTTCCTTTATTGACCCCCCGATGACC CTCTTCTTTGTTCGACGTGGTGTTCTTCTCTCGACTCGCGTTGCCCGGCG ACCCATCGCTTCGGCGGCACAGGGGCAGGAGCCGGAGAACTTTTTCGTGT CCGCTGGGTTTGCTCTGACCCACCCCACCTCCGTCACGGACATCACTGCT ATCGAGGCAGTCAGGGTAGAAGAAATCGATGAGGGGGCGGTGAGTTGCGA TCGTGATGTCTTGGTTGTTGTTTTCTGCTGTCCTCCTAAATCAAGATGAG ACATTTTTTACGTCTTGACCCCTTTCGCAGCATTCTCCGCCTTCCTTCCT GACCATACTCCCTTGTATTTTTGATCGTGTATACACGCCTCCCGCTTGCT TCGTACTGTTTAAATCAATAGTTTTAATCAAAAGAGCGTTCTGATTTGTC CAGCACTTCGTGAAGTTTCAGCTCCTCGTCTTGCACCCATTTCAGTGCTC TCTCGTGACCTAGTGCTCGGGTGCACGACAATCATTTGCTTCATAGGCCA CCGGCAGAGGTGCTCTAGTATATAGAGTGTCGGACTTGAGTGCGAAGGTG ATGGCGAGCGCGGCTTCCGGTGTTGGTTCCCCTTCATAACCTTTGCGTGG ATCACGGCGAATCTCCATAGACCGATTGGGCGTTTTGATTACGTTGGTAG CCTTTGGTTTCAAGTCTCATAACGGCACACGCCCGAGCGTTTACCCGCCT CTACTGACCAACCCCTTCCCTTGATCAAATGTATTCACGAATTTTCGTAG TCCTGCACGGACGGTGGAGTGGCCCATATGTGTACGCCCATATTTCAATC TTGATTTTTTTTTTTGGCGTGGTGGGCATTCGTAAATTCTTGTAATATAC GCCTGTGGACGAACGTTGTGCGATCCAGGTAAAGTCTTCGTATGACGCCG CGAAACGCGAGATGGACGCGGCAACCGAGGGGTCCCGCGAGGCGGCCGAG GCGCAGGTGGCCGTAGAGACCACCAAGGCTATGGCGGCGGCCATCGGCGT CGTGCTCGCCAGCTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6581:4852..8017-

>mRNA_Ecto-sp13_S_contig6581.17414.1 ID=mRNA_Ecto-sp13_S_contig6581.17414.1|Name=mRNA_Ecto-sp13_S_contig6581.17414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6581:4852..8017- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGGAGTTGCTGCCAGGCGCGTGGCGGGAGCGGCTAGGCCGGCGCT
CCGAACAGCGAGGTGTTTTTCCACAGCCGAGGCGCCCGCAGTGATGAAGC
TCAACTTTTGCCTACCGCACGAGACCATCTACAAGGACAAGGATGTCGAC
CAGGTGAGTGCACCGCGCAGTCATGGAAAGATCGGTATAACTGCCGGGAT
GATCCCGAACGGCAGCAAAATAAGCAGTAGTACCGTCCGTGCTGCCGGGC
AGGAGCCGGAGAACTTTTTCGTGTCCGCTGGGTTTGCTCTGACCCACCCC
ACCTCCGTCACGGACATCACTGCTATCGAGGCAGTCAGGGTAGAAGAAAT
CGATGAGGGGGCGGTAAAGTCTTCGTATGACGCCGCGAAACGCGAGATGG
ACGCGGCAACCGAGGGGTCCCGCGAGGCGGCCGAGGCGCAGGTGGCCGTA
GAGACCACCAAGGCTATGGCGGCGGCCATCGGCGTCGTGCTCGCCAGCTA
A
back to top