mRNA_Ecto-sp13_S_contig6576.17403.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6576.17403.1
Unique NamemRNA_Ecto-sp13_S_contig6576.17403.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6576.17403.1 vs. uniprot
Match: D8LIC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC9_ECTSI)

HSP 1 Score: 1253 bits (3243), Expect = 0.000e+0
Identity = 775/849 (91.28%), Postives = 781/849 (91.99%), Query Frame = 1 
Query:    1 QLAERYTVEVRRPIDLTTVARRVRRGTYDDSAGRLRRDIARIFTNCERFNMCSGQLFVGIARHLRALFESKWAESDLPYPGESQATSHRRRAALRAARYRLCWRVQLRGPXXXXXXXXXXXXXXXXXAAGGPGANGVSREFSEDILPMLSGEGEESNEEWTLGLFAERACLALGLRANQPPPVEXXXXXXXXXXXXXXXXXXXXXXGEKAGRDACADWLFGPRQAAWLAAETAPAGEKRDPALTPPPVATAAVVSAAWRALDGALSPATVLVASNAARGTPFSSVWARPDKLVWAKQAKNTFWPAMLLWGSGTTAALKEVNMGRVPPAFREELEKQAKGTKGNNRNGAVVEFFGLHEFALLKPDALRPLSTLDKSPNKTVSKNKRWDPTMEEARKAVVNLRDLETTMYMPQPAPAAGLTGFTMEPSSEEVGTTGTPASDTDTSSGESXXXXXXESNADSASPPTAECSSXXXXXXXXXXXXXXXXSCTAAVAGSASSAGGPHRDSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXATVGAGTTGSTASREGLNAAGGGKGRSGGLPAWRLALKRPLEELTPKERALEKVCRYLDKFGDMFSPQAQLKAAAEARDKDKAAMLGGRGHNNAPSAPAAAAVLGQTGLWGSLMGAPVKVEEETESTDGEDEDIGMIDSEGPNKCADRKAALRRQQEILRKDIENLQARAVLQEKRLNGLGAAIPPHAARQAKRDREWREFLDRRTSGSSAATASPRPSASEGSAKHPPVSPAASGTAVPASSGXXXXXXXXXXXXXXXXXXXVSSPCCSSLSRGSGDXXXXXXXXXXXSRAYGSSAFRGVNLNGNRWLARISQ 2547
            +LAERYTVEVRRPIDLTTVARRVRRGTYD+SAGRLRRDIARIFTNCERFNMCSGQLFVGIARHLRALFESKWAESDLPYPGESQATSHRRRAALR ARYRLCWR QLRGPXXXXXXXXXXXXXXXXXAAGGPGANGVSREFSEDILPMLSGEGEESNEEWTLGLFAERACLALGLRANQPP   XXXXXXXXXXXXXXXXXXX   GEKAGRDACADWLFGPRQAAWLAAETAPAGEKRDPA  PPPVATAAVVSAAWRALDGALSPATVLVASNAARGTPFSSVWARPDKLVWAKQAKNTFWPAMLLWGSGTTAALKEVNMGRVPPAFREELEKQAKGTKGNNRNGAVVEFFGLHEFALLKPDALRPLSTLDKSPNKTVSKNKRWDPTMEEARKAVVNLRDLET+MYMPQP PAAGL G TMEPSSEE+  TGTPASDTDTSSGES      ESNAD ASPPTAECSS XXXXXXXXXXXX   SCTAAVAGSASS GGPHRDSLG XXXXXXXXXXXXXXXXXXXXX            +TG  +  EGLNAAGGGKGRSGGL AWRLALKRPLEELTPKERALEKVCRYLDKFGDMFSPQAQLKAAAEARDKDKAAMLGGRGHNNAPSAPAAAAVLGQTGLWGSLMGAP KVEEETESTDGEDEDIGMIDSEGPNKCADRKAALRRQQEILRKDIENLQARAVLQEKRLNGLGAAIPPHAARQAKRDREWREFLDRRTS SSAATASPRPSASEGSAKHPP SPAASGTA      XXXXXXXXXX          SSP CSSLSRGSGD  XXXXXXXX SRAYGSSAFRGVNLNGNRWLARISQ
Sbjct:   26 ELAERYTVEVRRPIDLTTVARRVRRGTYDNSAGRLRRDIARIFTNCERFNMCSGQLFVGIARHLRALFESKWAESDLPYPGESQATSHRRRAALRTARYRLCWRAQLRGPXXXXXXXXXXXXXXXXXAAGGPGANGVSREFSEDILPMLSGEGEESNEEWTLGLFAERACLALGLRANQPPXXXXXXXXXXXXXXXXXXXXXX---GEKAGRDACADWLFGPRQAAWLAAETAPAGEKRDPASAPPPVATAAVVSAAWRALDGALSPATVLVASNAARGTPFSSVWARPDKLVWAKQAKNTFWPAMLLWGSGTTAALKEVNMGRVPPAFREELEKQAKGTKGNNRNGAVVEFFGLHEFALLKPDALRPLSTLDKSPNKTVSKNKRWDPTMEEARKAVVNLRDLETSMYMPQPEPAAGLNGLTMEPSSEELHQTGTPASDTDTSSGESTLESDTESNADLASPPTAECSSSXXXXXXXXXXXXP--SCTAAVAGSASSVGGPHRDSLGGXXXXXXXXXXXXXXXXXXXXXLLL---------STG-VSHFEGLNAAGGGKGRSGGLSAWRLALKRPLEELTPKERALEKVCRYLDKFGDMFSPQAQLKAAAEARDKDKAAMLGGRGHNNAPSAPAAAAVLGQTGLWGSLMGAPAKVEEETESTDGEDEDIGMIDSEGPNKCADRKAALRRQQEILRKDIENLQARAVLQEKRLNGLGAAIPPHAARQAKRDREWREFLDRRTSDSSAATASPRPSASEGSAKHPPASPAASGTAXXXXXXXXXXXXXXXXPSSANGGDSASSPGCSSLSRGSGDRGXXXXXXXXSSRAYGSSAFRGVNLNGNRWLARISQ 859
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6576.17403.1 vs. uniprot
Match: A0A835ZC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC34_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.220e-35
Identity = 137/400 (34.25%), Postives = 184/400 (46.00%), Query Frame = 1 
Query:    1 QLAERYTVEVRRPIDLTTVARRVRRGTYDDSAGRLRRDIARIFTNCERFNMCSGQLFVGIARHLRALFESKWAESDLPYPGESQATSHRRRAALRAARYRLCWRVQLRGPXXXXXXXXXXXXXXXXXAAGGPGANGVSREFSEDILPMLSGEGEESNEEWTLGLFAERACLALGLRANQPPPVEXXXXXXXXXXXXXXXXXXXXXXGEKAGRDACADWLFGPRQAAWLAAETAPAGEKRDPALTPPPVATAAVVSAAWRALDGALSPATVLVASNAARGTPFSSVWARPDKLVWAKQAKNTFWPAMLLWGSGTTAALKEVNMGRVPPAFREELEKQ--AKGTKGNNRNG---AVVEFFGLHEFALLKPDAL--RPLSTLDKSPNKTVSKNKRWDPTMEEA 1179
            ++A  Y   VRRP+DL+TVARR+RRG+Y D AG++ RDI+RIF NCERFN+ S +L++  ARHL+AL +  +AE+ L   GE+ A +  R  A RA R+   W   L  P                  A    A                       +  T+G     A  ALGL     PP  XXXX                     A   A A+W  G       A+  A  GE                   AW  +  AL+  T  +A   ARGT  SS+WARP  LVWAKQAKNTFWPAM+L  +     L  +N  R+P A    LE++  A+G   + ++     +VEF G HEF  L+ DA   RPLS    +P++   K + ++  + EA
Sbjct: 2283 EIAIAYARAVRRPMDLSTVARRLRRGSYPD-AGKVYRDISRIFRNCERFNVDS-RLYINTARHLQALIDGLFAETGLALSGETAAETAARATASRARRFAAVWHAALLPPF----------------TARVAAAXXXXXXXXXXXXXXXXXXXXXXQDGVTVGAAVLHARAALGL-----PPXXXXXXH--------------------AQAAAEAEWAVG-------ASSVARDGE-------------------AWGDVVNALAQLTPELAEAVARGTEISSIWARPCALVWAKQAKNTFWPAMMLGRAAQGEQLTPINAARMPAAIFNMLEQRGPARGAPSSAQHADSHVIVEFLGTHEFGWLRDDAASARPLSDAAAAPHQKAPKKRAYEAALGEA 2613
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6576.17403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIC9_ECTSI0.000e+091.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC34_9STRA1.220e-3534.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6576contigEcto-sp13_S_contig6576:133..6963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score1258.8
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LIC9
Model size2547
KEGG koko:K09285
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0001101,GO:0003674,GO:0003700,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009891,GO:0009893,GO:0010029,GO:0010033,GO:0010035,GO:0010187,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033993,GO:0040008,GO:0042221,GO:0042304,GO:0045723,GO:0045834,GO:0045923,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048580,GO:0048581,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051239,GO:0051241,GO:0051252,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0080090,GO:0097305,GO:0140110,GO:1900140,GO:1901700,GO:1901957,GO:1901959,GO:1903506,GO:2000026,GO:2000112,GO:2001141
Exons10
EggNOG free text desc.positive regulation of cutin biosynthetic process
EggNOG OGs28IJ6@1,2QUXV@2759
Ec32 ortholog descriptionBromodomain, PWWP and AP2/ERF domain protein
Ec32 orthologEc-18_004180.1
Cds size2547
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6576.17403.1prot_Ecto-sp13_S_contig6576.17403.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6576 133..6963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463905.765851-CDS-Ecto-sp13_S_contig6576:132..4051681463905.765851-CDS-Ecto-sp13_S_contig6576:132..405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 133..405 -
1681463905.781695-CDS-Ecto-sp13_S_contig6576:1815..19651681463905.781695-CDS-Ecto-sp13_S_contig6576:1815..1965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 1816..1965 -
1681463905.803578-CDS-Ecto-sp13_S_contig6576:2091..22141681463905.803578-CDS-Ecto-sp13_S_contig6576:2091..2214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 2092..2214 -
1681463905.8174481-CDS-Ecto-sp13_S_contig6576:2609..27591681463905.8174481-CDS-Ecto-sp13_S_contig6576:2609..2759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 2610..2759 -
1681463905.8395126-CDS-Ecto-sp13_S_contig6576:2923..31381681463905.8395126-CDS-Ecto-sp13_S_contig6576:2923..3138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 2924..3138 -
1681463905.8501506-CDS-Ecto-sp13_S_contig6576:3396..37361681463905.8501506-CDS-Ecto-sp13_S_contig6576:3396..3736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 3397..3736 -
1681463905.8688164-CDS-Ecto-sp13_S_contig6576:4308..44671681463905.8688164-CDS-Ecto-sp13_S_contig6576:4308..4467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 4309..4467 -
1681463905.883811-CDS-Ecto-sp13_S_contig6576:4982..51111681463905.883811-CDS-Ecto-sp13_S_contig6576:4982..5111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 4983..5111 -
1681463905.9006054-CDS-Ecto-sp13_S_contig6576:5672..64851681463905.9006054-CDS-Ecto-sp13_S_contig6576:5672..6485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 5673..6485 -
1681463905.9106078-CDS-Ecto-sp13_S_contig6576:6768..69631681463905.9106078-CDS-Ecto-sp13_S_contig6576:6768..6963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6576 6769..6963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6576.17403.1

>prot_Ecto-sp13_S_contig6576.17403.1 ID=prot_Ecto-sp13_S_contig6576.17403.1|Name=mRNA_Ecto-sp13_S_contig6576.17403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=849bp
QLAERYTVEVRRPIDLTTVARRVRRGTYDDSAGRLRRDIARIFTNCERFN
MCSGQLFVGIARHLRALFESKWAESDLPYPGESQATSHRRRAALRAARYR
LCWRVQLRGPLREAARQAVRAASAAALAAGGPGANGVSREFSEDILPMLS
GEGEESNEEWTLGLFAERACLALGLRANQPPPVEEVCPGGGGGAAAAAAA
AAAAAAGEKAGRDACADWLFGPRQAAWLAAETAPAGEKRDPALTPPPVAT
AAVVSAAWRALDGALSPATVLVASNAARGTPFSSVWARPDKLVWAKQAKN
TFWPAMLLWGSGTTAALKEVNMGRVPPAFREELEKQAKGTKGNNRNGAVV
EFFGLHEFALLKPDALRPLSTLDKSPNKTVSKNKRWDPTMEEARKAVVNL
RDLETTMYMPQPAPAAGLTGFTMEPSSEEVGTTGTPASDTDTSSGESTLE
SDTESNADSASPPTAECSSSSCSSSSSSSSPFPAPSCTAAVAGSASSAGG
PHRDSLGGGGAPPSLTAMSPPPPPSRTSPPPAATAATVGAGTTGSTASRE
GLNAAGGGKGRSGGLPAWRLALKRPLEELTPKERALEKVCRYLDKFGDMF
SPQAQLKAAAEARDKDKAAMLGGRGHNNAPSAPAAAAVLGQTGLWGSLMG
APVKVEEETESTDGEDEDIGMIDSEGPNKCADRKAALRRQQEILRKDIEN
LQARAVLQEKRLNGLGAAIPPHAARQAKRDREWREFLDRRTSGSSAATAS
PRPSASEGSAKHPPVSPAASGTAVPASSGSAAAGTTSATPSSADGGDSVS
SPCCSSLSRGSGDRGGGAAGASSSSRAYGSSAFRGVNLNGNRWLARISQ
back to top

mRNA from alignment at Ecto-sp13_S_contig6576:133..6963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6576.17403.1 ID=mRNA_Ecto-sp13_S_contig6576.17403.1|Name=mRNA_Ecto-sp13_S_contig6576.17403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6576:133..6963- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGGCGGAAAGATATACGGTGGAGGTGCGGCGTCCCATCGACCTCAC
CACGGTGGCTAGGCGAGTCAGGAGAGGCACGTACGACGACTCCGCGGGCC
GGCTGAGGCGCGACATCGCCCGCATCTTCACCAACTGCGAGAGGTTCAAC
ATGTGCAGTGGTCAGCTCTTCGTCGGCATCGCGCGTCATCTGAGGGTGAG
GGAAGCGGGGGCCCGCGTTGTGGGGGTACGCATGCCTTGGTTGCCCTTTG
GTCGCTTGCCCATTGGCGTAGAAAGTGGTACGACAGATGGGACACACCAG
GAAGAGCTTCGCAGTGGCACGACTAAATCTCTTGGGGCGACTGGGTCGGT
TGCTCTCGCACCAATGTCACACAGGCCCGCCATGCACCATCCTTCTTTTG
TCAAAAGCTTGCTTGCTGAACGAAACTATTACACTTTCTGAAGTACTTGC
CCCTCCTGTCCTTGCACCCCTGCGCCAGGCGCTTTTCGAATCAAAGTGGG
CGGAATCCGACCTGCCGTACCCCGGAGAGAGCCAGGCCACCTCGCACCGC
CGACGCGCCGCGCTCCGCGCCGCCAGGTACCGCCTCTGCTGGCGGGTGCA
GCTGCGGGGCCCCCTCCGCGAGGCCGCCCGGCAGGCGGTCCGGGCGGCGA
GCGCGGCGGCTCTCGCTGCCGGCGGTCCCGGCGCGAACGGGGTGTCGCGG
GAGTTCTCCGAGGACATCCTGCCGATGCTCTCCGGGGAAGGGGAGGAGAG
CAACGAGGAGTGGACCCTCGGGCTTTTCGCGGAGCGGGCGTGCCTGGCCC
TGGGGTTGCGGGCGAACCAGCCCCCCCCGGTGGAGGAGGTGTGTCCGGGC
GGCGGCGGCGGAGCAGCAGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGC
CGGCGAGAAGGCCGGGCGCGACGCCTGCGCGGATTGGCTGTTCGGCCCTC
GACAGGCCGCCTGGCTGGCGGCGGAGACGGCGCCCGCCGGAGAGAAGCGG
GACCCGGCGTTGACGCCGCCCCCCGTGGCGACCGCCGCGGTGGTGTCGGC
GGCGTGGCGGGCCCTCGACGGCGCGCTCTCGCCGGCGACGGTGCTGGTGG
CCTCCAACGCGGCGCGGGGCACCCCGTTCTCGTCCGTGTGGGCGCGGCCG
GACAAGCTCGTCTGGGCCAAGCAGGCGAAGAACACGTTCTGGCCGGCCAT
GCTCCTGTGGGGCAGCGGCACCACGGCGGCCCTCAAGGAGGTGAACATGG
GCAGGGTGCCCCCGGCGTTCCGGGAGGAGCTCGAGAAGCAGGTGTGTATG
TATGTGTTTGTGTATCGCTACTGCTGTGTGTGTGCGTGTACGTGTTTTAT
TTTGTTTTGAGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGTC
AGTGTTAATGTGTGTTTATTCATAAGTAGTTTGGCACGACCGCCTTGACC
AAACCGGGCGGCCTAACGAAATGTACGTCAGTGTCAGCGCGTAAGAACTG
GAGGTCCTCGCAAGAGGACCCAAGCTTCTGTACGGTTGTCGGTATCTGTG
TGGTTGTGGGTGTGGGTGGATGTGTTTTTTTTTATCTGTTGTACTTCGAA
AAATCATCTCCGTCTTTTCTTGCTCAATGACTCGGTCTCTGCCGTGTCTT
CGTCGCGCTTTTGCATGCGCTTCACGAGGACCTTGGATAGGCCTGATCGA
TAACCAGTCTTGGCGAAATCACTCCCAAAATATGGACCTCCTTTGGGCCG
TGGTTATCGGTAGGTCCCGTCCAAGCCCCGCCCTGCCCTCCCACATCCTC
GGCTCACTGTTTCCTCTTCTTTTTCTTGGTTTTGCTGGTTGCGGCGCAAC
AGGCGAAAGGAACGAAGGGAAATAACAGAAACGGCGCGGTGGTGGAGTTC
TTCGGATTGCATGAGTTCGCCCTGCTGAAGCCGGACGCTCTGCGGCCACT
CTCCACCCTCGACAAGAGCCCAAACAAAACGGTGCGTGCACCGTTTTCCT
CTTGACCGGGATTATCCACAGACACCTAACTTGTCAACCTATGTGTATCG
ACGCACGCCACCGGTGGCATGTTTGTCGTTGTAGACCGACTGAATCGACG
CACGCCACCGGTTGTTTGTTTGTTGTTGTGGACAAGTGAGTCACACTGCG
ATGAAACCCCTACGACGTACCTTTGCTGAGAACACAGCATTTTTTTCTTT
TTTTGCGCCGCCCCCGGTTCGCTGAAGAAGAGCTGTTAGGATAGCATACT
CGAGTTTCCGCATACGAGCATGGGATTTTTTTTTCTCGCCACGGGCCTGC
GGACACGTTGCGAGGGCGTGAGAGCAGGTTTGCCCATGCACCGCCCTGTG
TGGCTGAAGAGGAGGGGTGCACGTCCCCGCGCACGTCATGCTAGGTTGCT
GTTGGTGTTTTCGTTCATGTTGCACCAGCATCAAATATGATTTTGGTTGA
AATGTTCACCGCTCTCCCCCCTTTCCCCCAACCACGTATCTGTCAGGTGT
CGAAGAATAAGCGGTGGGATCCAACGATGGAGGAAGCTAGGAAGGCCGTG
GTCAACCTGAGAGATCTCGAGACAACGATGTATATGCCGCAGCCGGCGCC
CGCGGCAGGACTAACCGGGTTTACGATGGAACCTTCGAGCGAAGAGGTGG
GAACGGTGTTCGGAATTAAAGTTTCCTCAGCTATTGACCCGACCTCTCGG
TTCTTTCGTCATGCCGGTCTCACCCCCGTGGTCATGTTGGAATCTTGCGC
CTGCACGCGTGAGTTCGAACCTTGGAGCAGCCACCCTTTTTTTTTGTTTC
TCGCGGTATGATTATGTAGAACGAATGTGGCTGAAGTTGAGATAGTTCGT
GTGTACGTAGTTCTGGCTGAATCCGCCTCGCCATTGATTCAAGGCAAGCC
CCTCAGGAGAAATTGGTGGAGAAAATGAGAGGAACTCCTCTCCTTTGTGG
CGTTCTCCTCTCTGACCTCGACCGGTGCTTCCGACAAACCTATGGTACAT
CTAGAAATGTGTAGATGAAGGTGGGCATCTAGAACATACGGGATGCAGCA
CTCAAGGCACAGAGAGGCATGTTTGTATTGCGGCGCTTGTCTTTTCCCGT
TTGTGGAACTGACTAGGTACAACAGCAAAAAATCACAATGACGTTTCCTC
CAACATGACGCCGACCCTACACCTCAGCGCATACTTAACCCCCCCCCCCC
CCTCTTTATATATTAAAACTCCACCAGACGGGGACACCGGCCTCCGACAC
CGATACCTCTAGCGGGGAGAGCACCCTCGAATCGGACACGGAGTCCAACG
CGGATTCGGCGTCGCCCCCCACCGCGGAGTGCTCCTCCTCCTCCTGCTCT
TCCTCCTCCTCGTCCTCCTCGCCCTTCCCCGCTCCTTCCTGTACGGCAGC
CGTCGCGGGATCGGCGTCGTCGGCGGGGGGCCCGCACAGAGACTCCCTCG
GGGGTGGGGGGGCTCCGCCTTCGCTGACGGCTATGTCTCCCCCACCGCCC
CCGTCCCGAACATCGCCGCCGCCGGCGGCGACGGCGGCGACGGTCGGCGC
TGGGACGACCGGGAGCAGTGCGCCTGGTGCCGCGGGCGGCGGCTGCGGCG
GCGAGGCCGGCAAGCCCGTGGGGCCGGTGAAGCGCAAGCGGAAGCCGCTG
ACGGAGGAGCAGAAGCACGCGCGGAAGATAAGAAGTAGAAAGCTGGTGCT
TGAGAAGCAGCTGCTGCGGGAACAGCAGCGGCAGCAGCAGCAGCAGCAGC
AGCCCACGGCCCCCCCGGGGGCAGGGGGGGCAAATACCGCTCCCAGTGGG
ACCCCTTCGCTCCCCCCCAGCTTAGCGGCGAGCCGCGAGGGCTTGAACGC
GGCAGGAGGGGGGAAAGGACGGAGCGGCGGTCTACCGGCGTGGAGGTTGG
CCTTGAAACGGCCGCTGGAAGAGCTCACCCCGAAGGAAAGGGCCTTGGAG
AAGGTCTGCAGGTACCTGGATAAGTTCGGGGACATGTTCTCGCCGCAGGC
GCAGCTCAAGGCAGCGGCGGAAGCGCGAGATAAAGACAAGGTAGGGAGGG
CTGCTTGTTATGGTGCCCGGGAGACGTTTATGGGGTGCGTTGGTTGTTGG
GTGCTCGCCAACCCGTGTGCTTTGTCAGCGATTATTTTTTCTGTTCACGG
CGGTCGCCTTATCTCGCGTTCTCGGCTTTGTTGTGTCGGCGTTCTTCGTC
CTAGGCGGCTATGCTCGGCGGAAGGGGCCACAACAACGCCCCATCTGCAC
CTGCGGCGGCCGCGGTGCTGGGACAGACCGGACTGTGGGGGAGCCTGATG
GGCGCGCCGGTAAAGGTTGAGGAGGAGACGGAGAGCACGGACGGCGAAGA
TGAGGTACGCAGCTGTCTATCTCGCTTTTGGCGTGTTTTTTTTTAAAGTA
TGGGTGGGAAGTAAGCTTGACCCATTCATCTGGACCGATGTTCTTGCAGG
AGAATCGTGTAAGGCTTGTACGAAGACAAACAGGTTTTCGTTGTATCCTC
GTATGAAACGACAAGATTCGAGGTTTCTCCAAGGGTCACCACACTGCTAA
TGTACTTGGCGCTTCTGGGCTCTCTTTGGTCGCGGATGAAATGATTTTTG
GTGTCTGCTGTGGTGTGTCTCTCTCCAGAGGTGAGTATCACTTTTTGTTT
TGAGTCAACGCCGTGTATCTCTCTTTTCCTTTCTCATCCCCCCCCCTCTC
TGCTTCCGCCCGCCCCCTTGCGTTGCCCGCTTTTGATTACGTCTAAAAGG
ACATCGGCATGATCGACTCGGAGGGGCCGAACAAATGCGCTGACCGCAAG
GCGGCGCTTCGACGGCAACAGGAGATCCTCAGGAAGGACATCGAGAACTT
GCAAGCCCGCGCGGTCCTCCAGGTACGTGGGCATCCATCGAGCGGGAAAA
ATGTTGTCGAAGTTTGCGGGGCTTTGAAAAATGACGCAGGTAGCGCTCTC
GTGATGGTGCAAGTCGTAACCGTTGCTGCTGGCTTCTCTCGACTGCAGGA
GAAAAGGCTGAACGGGCTGGGAGCGGCCATCCCTCCGCACGCTGCACGGC
AAGCGAAACGGGACCGGGAGTGGAGGGAGTTCCTCGACAGGCGGACGAGC
GGCTCCTCCGCCGCCACCGCTTCTCCTCGGCCGTCGGCCTCTGAGGGGGT
GAGGCTTGACGCGCATTATCATCTTTGCTGTTTGTGTTGTCTTCACGTCG
GGAGTCGTCCTGGCCCTCACCCTGGGTCTGGGGGTGTTCTGAGCGGTTTT
CACCGGTTCACCTGCGTTGCAGCTCATGGGAAAAAGGGCCTTTTTTTTAT
TCCTGAAAACAAACACGATAGCACGGTGCCCCCTGAACTCTTTTTCGTAT
GGGGTTTGATGTTATTTTAGAACAACTCCAGCTGCAGTGCCGATCCAAAA
TCCTAGATCGCGGCATCGCAATCTGTGGTACCCAGACTACACCGGCCCCG
AACGCCAGTGATTTTCATGTGCTTTCTGGACCGCGGCAGCGTTGCAAAGT
CTGACCAGAGGTTCCGTGACGACACGAAACTGGAGATGGCCGTTTTTTCT
TCGACGCGCTAATTGCGCCGCTGCCAACTACTCGTGTTCAGAGGCAGTTA
TTATAGGTGTCGATTCAAGGTGGCCTTTGCAGACCTTTGGAGGGCGATAT
AATGCTGATCCAAATTTCAAGATTTTTGCATTGGGTTCTGTGATTAATTT
TCTGCCGTGGGGCGAAGTCACGAAGGACATAGTCCCGTTTTCGGACCGCG
ACGGCCTGCGGAAGTTGGACACCAAGAGAGCTGAACAACAGGGCATTCGC
AACAGCAATCGATCGGCATAATGATGAAGCAAACATGAGCTGAAAGAAAA
TCACGGCGTGAAAACTGCTTGCTACCATAGGTTGGAAGTATGTTGGACTA
GTCTGCCAGTTTCATGGAGATCGGCGGTCTGTGCCAGTAGTAATAGTGGT
GGCTAAGGTGACCTCGGGTGGGCTGAGCAGCAAAAATTCAGAGAGGTTCC
GGAAAATTTTGGAGGCACCCAGTATATTTTCGTCAGCGTATTTTTTTCAG
TTTCGATGGGCTGCAACACAGGTGGGTCGGAAAGAGTGGAACCTTTTCGC
CACTTGGTAATCTCTACCGGTTTCCCAGACATGTAATGTTCGAACTAAAG
TTTTGTTCTCTGCGACTGGCGTGGACCATGTTTTTCTTGGAATGACGTAT
GTGGAGATGCAACAAGCAGCGGCTCGGCATGCTGACTTGCTGTGTTAGGC
AGCTGCAAGTCCTACCGCTGTCGGCCTTTCTCCGCGTCTGTGCCTGTAGT
GCCTTTTTTCGTGTCGGGAGGCTGCTTGTGCTATCATGTAGCTTTGTATT
ATTCCGAACCCTCGGAAAATCCATCTTATGGCGGTGAACAGCAATACCAG
CGATTGCGCCTTTTTCCAACCGTTTATCTCTTATCCGTGTTCTACCGTGC
CCCGAGGCACCCCGTTGGGTGTATGGCCTCCAACACCGTGTCTATCGCAT
TTCCGTCAATGTAACGCGCGCTTTTTGTTGCTTGCCCCCCCCTCCCCTGT
CTCCCCAGAGCGCGAAACACCCTCCAGTATCCCCCGCCGCCAGTGGGACT
GCAGTTCCTGCCTCCTCCGGTTCAGCTGCCGCTGGGACAACTTCAGCCAC
CCCTTCCTCTGCCGACGGGGGCGACTCGGTCTCCTCTCCTTGTTGCTCTT
CGTTGTCTCGCGGGAGCGGTGACCGGGGAGGCGGCGCCGCCGGCGCGAGT
TCGTCTTCACGAGCGTACGGGAGCTCGGCGTTCCGCGGCGTTAACCTGAA
CGGCAACCGCTGGTTGGCGCGCATTTCTCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6576:133..6963-

>mRNA_Ecto-sp13_S_contig6576.17403.1 ID=mRNA_Ecto-sp13_S_contig6576.17403.1|Name=mRNA_Ecto-sp13_S_contig6576.17403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2547bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6576:133..6963- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGGCGGAAAGATATACGGTGGAGGTGCGGCGTCCCATCGACCTCAC
CACGGTGGCTAGGCGAGTCAGGAGAGGCACGTACGACGACTCCGCGGGCC
GGCTGAGGCGCGACATCGCCCGCATCTTCACCAACTGCGAGAGGTTCAAC
ATGTGCAGTGGTCAGCTCTTCGTCGGCATCGCGCGTCATCTGAGGGCGCT
TTTCGAATCAAAGTGGGCGGAATCCGACCTGCCGTACCCCGGAGAGAGCC
AGGCCACCTCGCACCGCCGACGCGCCGCGCTCCGCGCCGCCAGGTACCGC
CTCTGCTGGCGGGTGCAGCTGCGGGGCCCCCTCCGCGAGGCCGCCCGGCA
GGCGGTCCGGGCGGCGAGCGCGGCGGCTCTCGCTGCCGGCGGTCCCGGCG
CGAACGGGGTGTCGCGGGAGTTCTCCGAGGACATCCTGCCGATGCTCTCC
GGGGAAGGGGAGGAGAGCAACGAGGAGTGGACCCTCGGGCTTTTCGCGGA
GCGGGCGTGCCTGGCCCTGGGGTTGCGGGCGAACCAGCCCCCCCCGGTGG
AGGAGGTGTGTCCGGGCGGCGGCGGCGGAGCAGCAGCAGCGGCCGCCGCC
GCCGCCGCCGCCGCCGCCGGCGAGAAGGCCGGGCGCGACGCCTGCGCGGA
TTGGCTGTTCGGCCCTCGACAGGCCGCCTGGCTGGCGGCGGAGACGGCGC
CCGCCGGAGAGAAGCGGGACCCGGCGTTGACGCCGCCCCCCGTGGCGACC
GCCGCGGTGGTGTCGGCGGCGTGGCGGGCCCTCGACGGCGCGCTCTCGCC
GGCGACGGTGCTGGTGGCCTCCAACGCGGCGCGGGGCACCCCGTTCTCGT
CCGTGTGGGCGCGGCCGGACAAGCTCGTCTGGGCCAAGCAGGCGAAGAAC
ACGTTCTGGCCGGCCATGCTCCTGTGGGGCAGCGGCACCACGGCGGCCCT
CAAGGAGGTGAACATGGGCAGGGTGCCCCCGGCGTTCCGGGAGGAGCTCG
AGAAGCAGGCGAAAGGAACGAAGGGAAATAACAGAAACGGCGCGGTGGTG
GAGTTCTTCGGATTGCATGAGTTCGCCCTGCTGAAGCCGGACGCTCTGCG
GCCACTCTCCACCCTCGACAAGAGCCCAAACAAAACGGTGTCGAAGAATA
AGCGGTGGGATCCAACGATGGAGGAAGCTAGGAAGGCCGTGGTCAACCTG
AGAGATCTCGAGACAACGATGTATATGCCGCAGCCGGCGCCCGCGGCAGG
ACTAACCGGGTTTACGATGGAACCTTCGAGCGAAGAGGTGGGAACGACGG
GGACACCGGCCTCCGACACCGATACCTCTAGCGGGGAGAGCACCCTCGAA
TCGGACACGGAGTCCAACGCGGATTCGGCGTCGCCCCCCACCGCGGAGTG
CTCCTCCTCCTCCTGCTCTTCCTCCTCCTCGTCCTCCTCGCCCTTCCCCG
CTCCTTCCTGTACGGCAGCCGTCGCGGGATCGGCGTCGTCGGCGGGGGGC
CCGCACAGAGACTCCCTCGGGGGTGGGGGGGCTCCGCCTTCGCTGACGGC
TATGTCTCCCCCACCGCCCCCGTCCCGAACATCGCCGCCGCCGGCGGCGA
CGGCGGCGACGGTCGGCGCTGGGACGACCGGGAGCACGGCGAGCCGCGAG
GGCTTGAACGCGGCAGGAGGGGGGAAAGGACGGAGCGGCGGTCTACCGGC
GTGGAGGTTGGCCTTGAAACGGCCGCTGGAAGAGCTCACCCCGAAGGAAA
GGGCCTTGGAGAAGGTCTGCAGGTACCTGGATAAGTTCGGGGACATGTTC
TCGCCGCAGGCGCAGCTCAAGGCAGCGGCGGAAGCGCGAGATAAAGACAA
GGCGGCTATGCTCGGCGGAAGGGGCCACAACAACGCCCCATCTGCACCTG
CGGCGGCCGCGGTGCTGGGACAGACCGGACTGTGGGGGAGCCTGATGGGC
GCGCCGGTAAAGGTTGAGGAGGAGACGGAGAGCACGGACGGCGAAGATGA
GGACATCGGCATGATCGACTCGGAGGGGCCGAACAAATGCGCTGACCGCA
AGGCGGCGCTTCGACGGCAACAGGAGATCCTCAGGAAGGACATCGAGAAC
TTGCAAGCCCGCGCGGTCCTCCAGGAGAAAAGGCTGAACGGGCTGGGAGC
GGCCATCCCTCCGCACGCTGCACGGCAAGCGAAACGGGACCGGGAGTGGA
GGGAGTTCCTCGACAGGCGGACGAGCGGCTCCTCCGCCGCCACCGCTTCT
CCTCGGCCGTCGGCCTCTGAGGGGAGCGCGAAACACCCTCCAGTATCCCC
CGCCGCCAGTGGGACTGCAGTTCCTGCCTCCTCCGGTTCAGCTGCCGCTG
GGACAACTTCAGCCACCCCTTCCTCTGCCGACGGGGGCGACTCGGTCTCC
TCTCCTTGTTGCTCTTCGTTGTCTCGCGGGAGCGGTGACCGGGGAGGCGG
CGCCGCCGGCGCGAGTTCGTCTTCACGAGCGTACGGGAGCTCGGCGTTCC
GCGGCGTTAACCTGAACGGCAACCGCTGGTTGGCGCGCATTTCTCAG
back to top